Wall clock time and date at job start Mon Mar 30 2020 02:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86798 * 120.00362 * 2 1 4 4 H 1.48498 * 109.47416 * 239.99970 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99555 * 3 2 1 7 7 C 1.40055 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99784 * 180.02562 * 7 2 1 9 9 C 1.46377 * 119.99662 * 359.72880 * 7 2 1 10 10 O 1.21681 * 120.00123 * 359.97438 * 9 7 2 11 11 N 1.34774 * 119.99306 * 180.02562 * 9 7 2 12 12 C 1.46507 * 119.99594 * 179.97438 * 11 9 7 13 13 H 1.09002 * 113.18922 * 22.34775 * 12 11 9 14 14 C 1.55699 * 114.08030 * 249.45102 * 12 11 9 15 15 C 1.50254 * 84.12621 * 282.65563 * 14 12 11 16 16 H 1.09000 * 112.21718 * 76.88010 * 15 14 12 17 17 C 1.51383 * 125.29058 * 218.75837 * 15 14 12 18 18 C 1.54063 * 106.08590 * 159.76702 * 17 15 14 19 19 C 1.52343 * 112.60766 * 303.97166 * 18 17 15 20 20 C 1.54254 * 112.37662 * 53.21435 * 19 18 17 21 21 C 1.50316 * 114.07510 * 154.99839 * 12 11 9 22 22 H 1.09002 * 112.91737 * 190.02629 * 21 12 11 23 23 H 0.97000 * 119.99610 * 0.02562 * 1 2 3 24 24 H 0.96995 * 120.00764 * 359.97438 * 11 9 7 25 25 H 1.09001 * 114.08322 * 36.44857 * 14 12 11 26 26 H 1.09008 * 114.08564 * 168.86402 * 14 12 11 27 27 H 1.09005 * 110.12568 * 40.62786 * 17 15 14 28 28 H 1.08997 * 110.22857 * 278.96279 * 17 15 14 29 29 H 1.09008 * 108.85908 * 183.16309 * 18 17 15 30 30 H 1.08997 * 108.77520 * 64.72031 * 18 17 15 31 31 H 1.09001 * 108.89529 * 292.46991 * 19 18 17 32 32 H 1.09002 * 108.82524 * 173.91436 * 19 18 17 33 33 H 1.09001 * 110.21971 * 183.86619 * 20 19 18 34 34 H 1.08999 * 110.21585 * 61.89391 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.0946 1.6963 -1.2125 5 1 1.2758 2.7464 0.0006 6 1 3.0945 1.6963 1.2126 7 6 2.0070 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0001 9 6 1.2750 -2.4805 0.0049 10 8 0.0582 -2.4804 0.0104 11 7 1.9490 -3.6477 0.0049 12 6 1.2164 -4.9164 0.0109 13 1 0.1977 -4.8257 -0.3661 14 6 1.3363 -5.7129 1.3433 15 6 2.6955 -6.0825 0.8204 16 1 3.4132 -5.2690 0.9266 17 6 3.3488 -7.4405 0.9653 18 6 4.4376 -7.5086 -0.1225 19 6 3.8847 -7.2630 -1.5207 20 6 3.0798 -5.9502 -1.6115 21 6 1.9845 -6.0708 -0.5696 22 1 1.3697 -6.9587 -0.7167 23 1 -0.4849 0.8401 -0.0004 24 1 2.9189 -3.6478 0.0009 25 1 1.3579 -5.0869 2.2354 26 1 0.6466 -6.5533 1.4229 27 1 2.6129 -8.2293 0.8092 28 1 3.7991 -7.5386 1.9531 29 1 4.9015 -8.4947 -0.0954 30 1 5.1967 -6.7568 0.0932 31 1 3.2358 -8.0947 -1.7948 32 1 4.7158 -7.2171 -2.2245 33 1 2.6444 -5.8433 -2.6051 34 1 3.7216 -5.0985 -1.3864 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712548642.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:44 Heat of formation + Delta-G solvation = -19.501150 kcal Electronic energy + Delta-G solvation = -15600.878859 eV Core-core repulsion = 13113.086976 eV Total energy + Delta-G solvation = -2487.791883 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.62949 -36.80846 -34.54728 -32.48585 -31.31359 -30.37891 -26.54100 -25.80216 -23.75500 -21.00796 -20.66592 -20.18943 -18.26551 -17.20605 -15.38904 -15.05992 -14.70807 -14.44987 -13.99065 -13.62167 -13.34389 -13.08820 -12.47756 -12.27624 -11.92946 -11.59605 -11.50010 -11.21300 -11.05421 -10.87901 -10.68010 -10.52155 -10.45313 -10.37857 -10.16694 -9.54602 -8.93800 -8.80892 -7.59669 -7.44487 -6.16708 -4.62582 3.16902 3.21650 3.23582 4.11728 4.48925 4.58334 4.76737 4.90593 4.91270 5.24108 5.33485 5.34233 5.51821 5.61186 5.68078 5.79382 5.88662 5.99181 6.01319 6.09143 6.14898 6.19431 6.23941 6.33131 6.43941 6.62379 6.65190 6.75853 6.82556 7.44802 7.95656 8.15742 8.35928 9.04017 9.56634 10.62485 10.81347 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.044642 B = 0.006742 C = 0.006383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.066708 B = 4152.009827 C = 4385.568938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.546 4.546 8 H 0.066 0.934 9 C 0.556 3.444 10 O -0.579 6.579 11 N -0.743 5.743 12 C 0.157 3.843 13 H 0.089 0.911 14 C -0.147 4.147 15 C -0.127 4.127 16 H 0.087 0.913 17 C -0.101 4.101 18 C -0.115 4.115 19 C -0.114 4.114 20 C -0.100 4.100 21 C -0.135 4.135 22 H 0.088 0.912 23 H 0.269 0.731 24 H 0.380 0.620 25 H 0.065 0.935 26 H 0.078 0.922 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.865 -11.867 -0.426 14.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.583 4.583 8 H 0.084 0.916 9 C 0.360 3.640 10 O -0.462 6.462 11 N -0.396 5.396 12 C 0.048 3.952 13 H 0.108 0.892 14 C -0.186 4.186 15 C -0.146 4.146 16 H 0.105 0.895 17 C -0.139 4.139 18 C -0.153 4.153 19 C -0.152 4.152 20 C -0.138 4.138 21 C -0.155 4.155 22 H 0.106 0.894 23 H 0.079 0.921 24 H 0.212 0.788 25 H 0.084 0.916 26 H 0.097 0.903 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.798 -11.742 -0.441 13.575 hybrid contribution 1.029 0.695 0.053 1.243 sum 7.827 -11.047 -0.388 13.544 Atomic orbital electron populations 1.70015 1.07037 1.27334 1.35279 1.25698 0.94606 1.00234 0.92630 0.86445 0.79827 0.81110 0.79414 1.19300 1.20548 1.19322 1.20845 0.93510 0.89444 1.54530 0.91558 1.18220 0.87235 0.82392 0.76128 1.90592 1.14096 1.86746 1.54751 1.45867 1.08149 1.04104 1.81522 1.20920 0.96790 0.83971 0.93483 0.89245 1.23105 0.95785 0.99995 0.99717 1.22445 0.96457 0.97128 0.98530 0.89503 1.21300 0.97766 0.96969 0.97843 1.21487 0.98104 1.00891 0.94768 1.21535 0.99310 0.97921 0.96430 1.21311 0.96633 0.96986 0.98871 1.22984 0.97401 0.99800 0.95267 0.89403 0.92067 0.78769 0.91630 0.90298 0.92165 0.92473 0.92716 0.92408 0.92650 0.92581 0.92149 0.91554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.24 11.83 55.55 0.66 -22.58 16 2 C 0.09 2.48 5.50 -17.36 -0.10 2.38 16 3 Si 0.91 20.28 29.56 -169.99 -5.02 15.26 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.55 -15.55 9.54 -35.63 -0.34 -15.89 16 8 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 9 C 0.56 15.94 7.75 -12.99 -0.10 15.84 16 10 O -0.58 -18.92 14.61 5.21 0.08 -18.85 16 11 N -0.74 -16.71 4.90 -58.78 -0.29 -16.99 16 12 C 0.16 3.06 4.50 -71.54 -0.32 2.74 16 13 H 0.09 1.99 7.45 -51.93 -0.39 1.60 16 14 C -0.15 -2.44 7.79 -30.22 -0.24 -2.67 16 15 C -0.13 -1.84 2.96 -94.84 -0.28 -2.12 16 16 H 0.09 1.35 6.59 -51.93 -0.34 1.01 16 17 C -0.10 -1.20 6.12 -26.99 -0.17 -1.36 16 18 C -0.11 -1.25 5.79 -26.51 -0.15 -1.41 16 19 C -0.11 -1.30 5.79 -26.41 -0.15 -1.45 16 20 C -0.10 -1.39 5.93 -26.76 -0.16 -1.55 16 21 C -0.14 -2.05 3.01 -94.52 -0.28 -2.33 16 22 H 0.09 1.23 8.01 -51.93 -0.42 0.81 16 23 H 0.27 7.38 8.29 -40.82 -0.34 7.04 16 24 H 0.38 7.65 6.58 -40.82 -0.27 7.38 16 25 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.08 1.16 8.12 -51.92 -0.42 0.74 16 27 H 0.06 0.68 8.06 -51.93 -0.42 0.26 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.97 7.19 -51.93 -0.37 0.60 16 LS Contribution 272.04 15.07 4.10 4.10 Total: -1.00 -32.74 272.04 -7.90 -40.64 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -5.13 Total: 6.25 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -2.29 Total: -7.83 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.37 Total: -39.57 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: 0.08 Total: -18.85 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -32.74 -7.90 -40.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712548642.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.143 kcal (2) G-P(sol) polarization free energy of solvation -32.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds