Wall clock time and date at job start Mon Mar 30 2020 02:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86798 * 120.00362 * 2 1 4 4 H 1.48498 * 109.47416 * 239.99970 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99555 * 3 2 1 7 7 C 1.40055 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99784 * 180.02562 * 7 2 1 9 9 C 1.46377 * 119.99662 * 359.72880 * 7 2 1 10 10 O 1.21681 * 120.00123 * 359.97438 * 9 7 2 11 11 N 1.34774 * 119.99306 * 180.02562 * 9 7 2 12 12 C 1.46507 * 119.99594 * 179.97438 * 11 9 7 13 13 H 1.09002 * 113.18922 * 22.34775 * 12 11 9 14 14 C 1.55699 * 114.08030 * 249.45102 * 12 11 9 15 15 C 1.50254 * 84.12621 * 282.65563 * 14 12 11 16 16 H 1.09000 * 112.21718 * 76.88010 * 15 14 12 17 17 C 1.51383 * 125.29058 * 218.75837 * 15 14 12 18 18 C 1.54063 * 106.08590 * 159.76702 * 17 15 14 19 19 C 1.52343 * 112.60766 * 303.97166 * 18 17 15 20 20 C 1.54254 * 112.37662 * 53.21435 * 19 18 17 21 21 C 1.50316 * 114.07510 * 154.99839 * 12 11 9 22 22 H 1.09002 * 112.91737 * 190.02629 * 21 12 11 23 23 H 0.97000 * 119.99610 * 0.02562 * 1 2 3 24 24 H 0.96995 * 120.00764 * 359.97438 * 11 9 7 25 25 H 1.09001 * 114.08322 * 36.44857 * 14 12 11 26 26 H 1.09008 * 114.08564 * 168.86402 * 14 12 11 27 27 H 1.09005 * 110.12568 * 40.62786 * 17 15 14 28 28 H 1.08997 * 110.22857 * 278.96279 * 17 15 14 29 29 H 1.09008 * 108.85908 * 183.16309 * 18 17 15 30 30 H 1.08997 * 108.77520 * 64.72031 * 18 17 15 31 31 H 1.09001 * 108.89529 * 292.46991 * 19 18 17 32 32 H 1.09002 * 108.82524 * 173.91436 * 19 18 17 33 33 H 1.09001 * 110.21971 * 183.86619 * 20 19 18 34 34 H 1.08999 * 110.21585 * 61.89391 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.0946 1.6963 -1.2125 5 1 1.2758 2.7464 0.0006 6 1 3.0945 1.6963 1.2126 7 6 2.0070 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0001 9 6 1.2750 -2.4805 0.0049 10 8 0.0582 -2.4804 0.0104 11 7 1.9490 -3.6477 0.0049 12 6 1.2164 -4.9164 0.0109 13 1 0.1977 -4.8257 -0.3661 14 6 1.3363 -5.7129 1.3433 15 6 2.6955 -6.0825 0.8204 16 1 3.4132 -5.2690 0.9266 17 6 3.3488 -7.4405 0.9653 18 6 4.4376 -7.5086 -0.1225 19 6 3.8847 -7.2630 -1.5207 20 6 3.0798 -5.9502 -1.6115 21 6 1.9845 -6.0708 -0.5696 22 1 1.3697 -6.9587 -0.7167 23 1 -0.4849 0.8401 -0.0004 24 1 2.9189 -3.6478 0.0009 25 1 1.3579 -5.0869 2.2354 26 1 0.6466 -6.5533 1.4229 27 1 2.6129 -8.2293 0.8092 28 1 3.7991 -7.5386 1.9531 29 1 4.9015 -8.4947 -0.0954 30 1 5.1967 -6.7568 0.0932 31 1 3.2358 -8.0947 -1.7948 32 1 4.7158 -7.2171 -2.2245 33 1 2.6444 -5.8433 -2.6051 34 1 3.7216 -5.0985 -1.3864 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712548642.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:44 Heat of formation + Delta-G solvation = -41.250495 kcal Electronic energy + Delta-G solvation = -15601.821981 eV Core-core repulsion = 13113.086976 eV Total energy + Delta-G solvation = -2488.735005 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.97176 -38.85820 -35.85882 -34.62378 -33.08952 -31.57490 -28.50514 -27.12341 -25.12473 -22.55450 -22.20012 -21.21196 -19.87721 -19.19696 -17.48534 -16.47476 -16.16499 -15.62132 -15.49577 -15.17279 -14.78152 -14.41036 -14.30288 -13.96179 -13.25608 -13.14499 -12.77833 -12.67356 -12.61604 -12.52365 -12.13417 -12.04440 -11.95458 -11.73907 -11.32254 -10.92933 -10.76107 -10.16892 -9.88111 -9.37737 -8.29965 -6.87240 1.38955 1.42767 1.54504 2.23963 2.45726 3.07091 3.29537 3.55160 3.78338 3.85397 4.07810 4.19614 4.21566 4.50028 4.55210 4.63159 4.73709 4.78042 4.84134 4.92576 5.01432 5.11659 5.18561 5.29961 5.31831 5.32768 5.37399 5.42625 5.56223 5.65284 5.87682 6.22926 6.34134 6.85323 7.54729 8.49366 8.67029 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.044642 B = 0.006742 C = 0.006383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.066708 B = 4152.009827 C = 4385.568938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.028 3.972 3 Si 0.999 3.001 4 H -0.254 1.254 5 H -0.273 1.273 6 H -0.254 1.254 7 C -0.576 4.576 8 H 0.086 0.914 9 C 0.539 3.461 10 O -0.632 6.632 11 N -0.729 5.729 12 C 0.127 3.873 13 H 0.050 0.950 14 C -0.138 4.138 15 C -0.112 4.112 16 H 0.073 0.927 17 C -0.096 4.096 18 C -0.114 4.114 19 C -0.108 4.108 20 C -0.103 4.103 21 C -0.124 4.124 22 H 0.107 0.893 23 H 0.275 0.725 24 H 0.392 0.608 25 H 0.043 0.957 26 H 0.103 0.897 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.314 -12.869 -0.434 16.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.187 4.187 3 Si 0.818 3.182 4 H -0.178 1.178 5 H -0.198 1.198 6 H -0.178 1.178 7 C -0.612 4.612 8 H 0.104 0.896 9 C 0.343 3.657 10 O -0.520 6.520 11 N -0.382 5.382 12 C 0.020 3.980 13 H 0.069 0.931 14 C -0.177 4.177 15 C -0.131 4.131 16 H 0.091 0.909 17 C -0.133 4.133 18 C -0.151 4.151 19 C -0.146 4.146 20 C -0.141 4.141 21 C -0.143 4.143 22 H 0.125 0.875 23 H 0.085 0.915 24 H 0.227 0.773 25 H 0.062 0.938 26 H 0.121 0.879 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.295 -12.806 -0.448 15.830 hybrid contribution 0.219 0.945 0.046 0.971 sum 9.514 -11.861 -0.402 15.211 Atomic orbital electron populations 1.70191 1.09567 1.29022 1.36394 1.26992 0.95531 1.04980 0.91151 0.85064 0.78209 0.74662 0.80297 1.17767 1.19793 1.17840 1.21403 0.94670 0.90166 1.54982 0.89576 1.18616 0.86855 0.84340 0.75843 1.90541 1.16268 1.87903 1.57261 1.45462 1.08645 1.03945 1.80196 1.21210 0.95458 0.84277 0.97060 0.93134 1.23073 0.98189 0.99679 0.96805 1.22282 0.94991 0.98756 0.97041 0.90856 1.21306 0.98163 0.94906 0.98974 1.21494 0.97630 1.02185 0.93806 1.21492 0.99512 0.96244 0.97310 1.21354 0.96289 0.98480 0.97970 1.22876 0.97238 0.97589 0.96576 0.87473 0.91540 0.77298 0.93842 0.87887 0.90903 0.91408 0.90369 0.92685 0.91492 0.91253 0.92728 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.43 11.83 21.84 0.26 -51.17 16 2 C 0.03 1.62 5.50 85.31 0.47 2.09 16 3 Si 1.00 41.57 29.56 68.60 2.03 43.60 16 4 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 5 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 6 H -0.25 -9.95 7.11 99.48 0.71 -9.25 16 7 C -0.58 -33.44 9.54 24.83 0.24 -33.20 16 8 H 0.09 4.47 7.85 -2.92 -0.02 4.45 16 9 C 0.54 32.29 7.75 86.36 0.67 32.96 16 10 O -0.63 -43.76 14.61 -4.29 -0.06 -43.82 16 11 N -0.73 -34.02 4.90 -458.11 -2.24 -36.27 16 12 C 0.13 5.13 4.50 42.65 0.19 5.33 16 13 H 0.05 2.41 7.45 -2.39 -0.02 2.39 16 14 C -0.14 -4.58 7.79 28.33 0.22 -4.36 16 15 C -0.11 -3.07 2.96 -13.52 -0.04 -3.11 16 16 H 0.07 2.21 6.59 -2.39 -0.02 2.20 16 17 C -0.10 -1.93 6.12 30.42 0.19 -1.75 16 18 C -0.11 -2.04 5.79 30.74 0.18 -1.86 16 19 C -0.11 -2.09 5.79 30.80 0.18 -1.91 16 20 C -0.10 -2.72 5.93 30.58 0.18 -2.54 16 21 C -0.12 -3.62 3.01 -13.32 -0.04 -3.66 16 22 H 0.11 2.77 8.01 -2.39 -0.02 2.75 16 23 H 0.27 15.55 8.29 -92.71 -0.77 14.78 16 24 H 0.39 16.12 6.58 -92.71 -0.61 15.51 16 25 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.10 2.89 8.12 -2.38 -0.02 2.87 16 27 H 0.07 1.33 8.06 -2.38 -0.02 1.31 16 28 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.05 1.54 7.19 -2.39 -0.02 1.52 16 Total: -1.00 -74.72 272.04 2.88 -71.84 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: 0.47 Total: 27.85 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: 2.43 Total: -12.02 kcal Atomic # 7 Polarization: -85.45 SS G_CDS: -1.99 Total: -87.44 kcal Atomic # 8 Polarization: -43.76 SS G_CDS: -0.06 Total: -43.82 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -74.72 2.88 -71.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712548642.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.585 kcal (2) G-P(sol) polarization free energy of solvation -74.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds