Wall clock time and date at job start Mon Mar 30 2020 02:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86797 * 119.99964 * 2 1 4 4 H 1.48494 * 109.47201 * 274.98558 * 3 2 1 5 5 H 1.48505 * 109.47020 * 34.98536 * 3 2 1 6 6 H 1.48500 * 109.47186 * 154.98379 * 3 2 1 7 7 C 1.40044 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00171 * 173.86906 * 7 2 1 9 9 C 1.46382 * 119.99974 * 354.14834 * 7 2 1 10 10 O 1.21690 * 119.99902 * 5.75375 * 9 7 2 11 11 N 1.34776 * 119.99953 * 185.75589 * 9 7 2 12 12 C 1.46499 * 119.99860 * 180.02562 * 11 9 7 13 13 H 1.09002 * 112.94973 * 23.38626 * 12 11 9 14 14 C 1.53961 * 113.74619 * 251.63965 * 12 11 9 15 15 C 1.54372 * 86.76606 * 219.10572 * 14 12 11 16 16 H 1.08997 * 114.01517 * 141.33169 * 15 14 12 17 17 C 1.53010 * 112.16382 * 271.56121 * 15 14 12 18 18 C 1.52987 * 109.20177 * 144.53872 * 17 15 14 19 19 C 1.52601 * 108.82843 * 296.32745 * 18 17 15 20 20 C 1.50548 * 111.48119 * 63.00435 * 19 18 17 21 21 C 1.50508 * 115.04256 * 314.51643 * 20 19 18 22 22 H 1.08996 * 110.66773 * 160.60173 * 21 20 19 23 23 H 0.97001 * 119.99868 * 359.97438 * 1 2 3 24 24 H 0.96996 * 119.99702 * 359.97438 * 11 9 7 25 25 H 1.09003 * 113.66289 * 333.56654 * 14 12 11 26 26 H 1.08997 * 113.66932 * 104.63804 * 14 12 11 27 27 H 1.08997 * 109.51462 * 264.45929 * 17 15 14 28 28 H 1.08997 * 109.51577 * 24.56962 * 17 15 14 29 29 H 1.09000 * 109.57498 * 56.13177 * 18 17 15 30 30 H 1.09001 * 109.57524 * 176.52642 * 18 17 15 31 31 H 1.09000 * 109.15625 * 184.11313 * 19 18 17 32 32 H 1.08997 * 109.16343 * 303.34536 * 19 18 17 33 33 H 1.08996 * 109.42009 * 192.10684 * 20 19 18 34 34 H 1.09000 * 106.89792 * 75.04114 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3828 2.1072 -1.3947 5 1 1.4947 2.6199 0.8028 6 1 3.5869 1.4121 0.5921 7 6 2.0070 -1.2128 0.0005 8 1 3.0823 -1.2155 -0.0993 9 6 1.2808 -2.4772 0.1304 10 8 0.0639 -2.4825 0.1324 11 7 1.9600 -3.6354 0.2476 12 6 1.2332 -4.9008 0.3770 13 1 0.2221 -4.8535 -0.0275 14 6 1.3122 -5.5200 1.7843 15 6 1.4334 -6.8884 1.0802 16 1 2.1308 -7.5744 1.5608 17 6 0.0667 -7.5177 0.8022 18 6 0.1211 -8.2721 -0.5276 19 6 0.3853 -7.2729 -1.6503 20 6 1.7235 -6.6025 -1.4881 21 6 2.0303 -6.1212 -0.0954 22 1 3.1020 -5.9684 0.0314 23 1 -0.4850 0.8401 0.0004 24 1 2.9299 -3.6311 0.2456 25 1 2.2055 -5.2329 2.3391 26 1 0.3965 -5.4062 2.3645 27 1 -0.1847 -8.2114 1.6044 28 1 -0.6900 -6.7351 0.7470 29 1 0.9245 -9.0082 -0.4972 30 1 -0.8305 -8.7741 -0.7019 31 1 0.3525 -7.7934 -2.6074 32 1 -0.3875 -6.5044 -1.6345 33 1 1.7888 -5.7541 -2.1693 34 1 2.4803 -7.3320 -1.7764 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712548644.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:49 Heat of formation + Delta-G solvation = -66.559317 kcal Electronic energy + Delta-G solvation = -15573.806353 eV Core-core repulsion = 13083.973875 eV Total energy + Delta-G solvation = -2489.832478 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.55686 -38.89529 -35.66951 -34.62329 -33.34536 -31.83934 -28.60372 -26.91510 -24.99319 -23.36236 -21.88605 -21.61848 -19.63099 -18.42720 -17.53842 -17.09813 -16.03409 -15.85803 -15.50415 -15.08488 -14.74448 -14.57640 -14.37603 -13.63903 -13.25585 -13.24999 -12.84289 -12.76283 -12.62094 -12.55146 -12.37018 -12.02750 -11.90420 -11.69250 -11.07641 -10.94057 -10.77737 -10.72476 -9.82792 -9.34337 -8.30149 -6.86059 1.38619 1.40308 1.56498 2.24320 2.46248 3.21432 3.51095 3.56482 3.62445 3.83399 4.07835 4.15486 4.25496 4.34617 4.52348 4.56579 4.71839 4.81888 4.84253 4.96803 5.04699 5.09116 5.13863 5.20700 5.27741 5.30989 5.38104 5.45634 5.57727 5.67828 5.89930 6.25306 6.36655 6.85997 7.58544 8.50471 8.67780 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.053463 B = 0.006367 C = 0.006336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.596393 B = 4396.839837 C = 4418.422874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.027 3.973 3 Si 0.999 3.001 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.248 1.248 7 C -0.577 4.577 8 H 0.087 0.913 9 C 0.537 3.463 10 O -0.636 6.636 11 N -0.744 5.744 12 C 0.123 3.877 13 H 0.061 0.939 14 C -0.155 4.155 15 C -0.080 4.080 16 H 0.106 0.894 17 C -0.107 4.107 18 C -0.107 4.107 19 C -0.120 4.120 20 C -0.105 4.105 21 C -0.097 4.097 22 H 0.095 0.905 23 H 0.274 0.726 24 H 0.393 0.607 25 H 0.085 0.915 26 H 0.048 0.952 27 H 0.083 0.917 28 H 0.037 0.963 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.028 0.972 33 H 0.040 0.960 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.117 -13.975 0.107 15.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.187 4.187 3 Si 0.818 3.182 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.171 1.171 7 C -0.614 4.614 8 H 0.105 0.895 9 C 0.341 3.659 10 O -0.523 6.523 11 N -0.396 5.396 12 C 0.017 3.983 13 H 0.079 0.921 14 C -0.195 4.195 15 C -0.099 4.099 16 H 0.124 0.876 17 C -0.145 4.145 18 C -0.144 4.144 19 C -0.157 4.157 20 C -0.142 4.142 21 C -0.116 4.116 22 H 0.113 0.887 23 H 0.084 0.916 24 H 0.227 0.773 25 H 0.103 0.897 26 H 0.066 0.934 27 H 0.102 0.898 28 H 0.056 0.944 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.047 0.953 33 H 0.059 0.941 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.081 -13.896 0.093 14.796 hybrid contribution 0.268 1.178 -0.021 1.209 sum 5.349 -12.717 0.072 13.796 Atomic orbital electron populations 1.70205 1.09643 1.28906 1.36582 1.27009 0.95504 1.05069 0.91152 0.84995 0.78924 0.75038 0.79239 1.18643 1.19715 1.17097 1.21464 0.95168 0.90465 1.54256 0.89516 1.18641 0.86801 0.84524 0.75887 1.90536 1.16362 1.87655 1.57788 1.45794 1.08885 1.05506 1.79430 1.22204 0.96069 0.83251 0.96748 0.92089 1.23726 1.01434 0.97356 0.96955 1.22028 0.97888 0.94581 0.95406 0.87559 1.21444 0.95075 0.99208 0.98765 1.21341 1.02612 0.97315 0.93131 1.20988 0.96639 0.98142 0.99938 1.20323 0.98570 0.99742 0.95573 1.22075 1.00064 0.94348 0.95118 0.88730 0.91607 0.77288 0.89660 0.93361 0.89833 0.94439 0.89918 0.90922 0.90419 0.95315 0.94119 0.90287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.91 11.85 21.83 0.26 -51.65 16 2 C 0.03 1.57 5.49 85.30 0.47 2.04 16 3 Si 1.00 41.84 29.56 68.60 2.03 43.87 16 4 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 5 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 6 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 7 C -0.58 -33.72 9.53 24.83 0.24 -33.49 16 8 H 0.09 4.54 7.85 -2.91 -0.02 4.51 16 9 C 0.54 32.42 7.74 86.36 0.67 33.09 16 10 O -0.64 -44.37 14.64 -4.32 -0.06 -44.43 16 11 N -0.74 -34.93 5.36 -444.90 -2.38 -37.31 16 12 C 0.12 4.99 3.48 45.39 0.16 5.15 16 13 H 0.06 2.98 6.95 -2.39 -0.02 2.97 16 14 C -0.16 -5.23 7.33 31.35 0.23 -5.00 16 15 C -0.08 -2.04 4.24 -10.48 -0.04 -2.08 16 16 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 17 C -0.11 -2.60 5.44 30.59 0.17 -2.43 16 18 C -0.11 -2.20 5.91 30.46 0.18 -2.02 16 19 C -0.12 -3.01 5.76 29.67 0.17 -2.84 16 20 C -0.10 -2.81 5.45 28.99 0.16 -2.65 16 21 C -0.10 -2.80 3.40 -11.71 -0.04 -2.84 16 22 H 0.09 2.47 8.07 -2.39 -0.02 2.45 16 23 H 0.27 15.59 8.29 -92.71 -0.77 14.82 16 24 H 0.39 15.91 8.67 -92.71 -0.80 15.11 16 25 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 26 H 0.05 1.75 8.07 -2.39 -0.02 1.73 16 27 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.04 1.13 7.29 -2.39 -0.02 1.11 16 29 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.03 0.89 8.08 -2.39 -0.02 0.87 16 33 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.08 1.68 8.13 -2.39 -0.02 1.66 16 Total: -1.00 -76.80 274.90 2.47 -74.33 By element: Atomic # 1 Polarization: 27.99 SS G_CDS: 0.28 Total: 28.27 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: 2.35 Total: -13.07 kcal Atomic # 7 Polarization: -86.84 SS G_CDS: -2.12 Total: -88.97 kcal Atomic # 8 Polarization: -44.37 SS G_CDS: -0.06 Total: -44.43 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -76.80 2.47 -74.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712548644.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.773 kcal (2) G-P(sol) polarization free energy of solvation -76.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds