Wall clock time and date at job start Mon Mar 30 2020 02:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86798 * 119.99902 * 2 1 4 4 H 1.48492 * 109.47547 * 89.99360 * 3 2 1 5 5 H 1.48504 * 109.46997 * 329.99122 * 3 2 1 6 6 H 1.48503 * 109.46992 * 209.99554 * 3 2 1 7 7 C 1.40043 * 119.99669 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00557 * 12.79785 * 7 2 1 9 9 C 1.46384 * 119.99748 * 192.79394 * 7 2 1 10 10 O 1.21688 * 119.99718 * 8.47568 * 9 7 2 11 11 N 1.34774 * 119.99992 * 188.47383 * 9 7 2 12 12 C 1.46495 * 119.99967 * 179.97438 * 11 9 7 13 13 H 1.08997 * 112.89315 * 336.35735 * 12 11 9 14 14 C 1.53968 * 113.66364 * 107.82880 * 12 11 9 15 15 C 1.53239 * 86.25674 * 87.90896 * 14 12 11 16 16 H 1.08998 * 110.60606 * 274.81646 * 15 14 12 17 17 C 1.50504 * 115.70939 * 147.23253 * 15 14 12 18 18 C 1.51628 * 114.40155 * 290.07044 * 17 15 14 19 19 C 1.52603 * 111.07466 * 313.10015 * 18 17 15 20 20 C 1.52984 * 108.82966 * 63.70075 * 19 18 17 21 21 C 1.52537 * 87.67260 * 26.87883 * 15 14 12 22 22 H 1.09003 * 114.78883 * 218.37747 * 21 15 14 23 23 H 0.96999 * 120.00421 * 174.71755 * 1 2 3 24 24 H 0.97007 * 119.99752 * 359.97438 * 11 9 7 25 25 H 1.08998 * 113.74563 * 202.24328 * 14 12 11 26 26 H 1.08994 * 113.74670 * 333.57840 * 14 12 11 27 27 H 1.09000 * 108.49466 * 168.80007 * 17 15 14 28 28 H 1.08998 * 108.37390 * 51.25694 * 17 15 14 29 29 H 1.09000 * 109.15632 * 192.68389 * 18 17 15 30 30 H 1.09001 * 109.15495 * 73.50494 * 18 17 15 31 31 H 1.09002 * 109.57451 * 303.89978 * 19 18 17 32 32 H 1.09000 * 109.57547 * 183.50742 * 19 18 17 33 33 H 1.09000 * 109.51585 * 176.41207 * 20 19 18 34 34 H 1.09001 * 109.55682 * 56.27751 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4881 2.0466 1.4000 5 1 1.4382 2.6526 -0.7002 6 1 3.5383 1.4401 -0.7000 7 6 2.0069 -1.2128 0.0005 8 1 1.4870 -2.1366 -0.2062 9 6 3.4435 -1.2285 0.2813 10 8 3.9995 -0.2161 0.6644 11 7 4.1502 -2.3640 0.1155 12 6 5.5879 -2.3795 0.3959 13 1 6.0439 -1.3919 0.3275 14 6 5.9592 -3.1463 1.6785 15 6 6.0255 -4.3949 0.7927 16 1 5.0364 -4.8389 0.6809 17 6 7.0435 -5.4277 1.1954 18 6 8.4836 -5.0062 0.9774 19 6 8.6736 -4.3988 -0.4096 20 6 7.8409 -3.1191 -0.5066 21 6 6.3580 -3.4724 -0.3757 22 1 5.8993 -3.7525 -1.3241 23 1 -0.4851 -0.8364 -0.0773 24 1 3.7067 -3.1711 -0.1895 25 1 6.9213 -2.8559 2.1005 26 1 5.1601 -3.1756 2.4191 27 1 6.8589 -6.3368 0.6229 28 1 6.9052 -5.6524 2.2529 29 1 9.1305 -5.8776 1.0781 30 1 8.7584 -4.2686 1.7315 31 1 8.3421 -5.1086 -1.1676 32 1 9.7264 -4.1622 -0.5635 33 1 8.0179 -2.6417 -1.4704 34 1 8.1250 -2.4374 0.2951 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712560815.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:52 Heat of formation + Delta-G solvation = -55.962063 kcal Electronic energy + Delta-G solvation = -15548.271239 eV Core-core repulsion = 13058.898292 eV Total energy + Delta-G solvation = -2489.372947 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.47196 -37.42838 -34.57681 -32.84081 -31.50939 -31.00703 -26.60545 -25.65932 -23.81253 -22.48514 -20.78706 -19.46869 -17.99749 -17.58186 -15.99946 -15.49314 -14.88462 -14.62162 -14.12206 -13.68693 -13.44822 -13.31344 -12.74909 -12.52950 -12.39296 -12.05768 -11.83901 -11.52893 -11.08177 -10.92091 -10.76030 -10.53411 -10.10470 -9.96022 -9.68613 -9.53171 -9.25500 -8.89302 -8.00908 -7.73462 -6.97800 -4.88810 3.59394 3.67120 4.06901 4.30566 4.39680 4.56797 4.62641 4.72195 4.86069 5.06549 5.15412 5.21008 5.42570 5.47266 5.50043 5.61674 5.69251 5.75885 5.91730 5.97977 6.04683 6.10715 6.15492 6.22929 6.26754 6.36522 6.48654 6.64898 6.68633 7.55679 7.75208 7.82749 8.15005 8.86654 9.13213 10.12877 10.34783 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.057329 B = 0.006646 C = 0.006322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.290748 B = 4211.872982 C = 4427.776155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.063 3.937 3 Si 1.123 2.877 4 H -0.288 1.288 5 H -0.320 1.320 6 H -0.276 1.276 7 C -0.602 4.602 8 H 0.069 0.931 9 C 0.553 3.447 10 O -0.618 6.618 11 N -0.738 5.738 12 C 0.137 3.863 13 H 0.092 0.908 14 C -0.154 4.154 15 C -0.099 4.099 16 H 0.078 0.922 17 C -0.103 4.103 18 C -0.115 4.115 19 C -0.115 4.115 20 C -0.099 4.099 21 C -0.114 4.114 22 H 0.076 0.924 23 H 0.277 0.723 24 H 0.386 0.614 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.171 -10.243 -0.265 17.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.155 4.155 3 Si 0.954 3.046 4 H -0.215 1.215 5 H -0.252 1.252 6 H -0.202 1.202 7 C -0.638 4.638 8 H 0.087 0.913 9 C 0.361 3.639 10 O -0.510 6.510 11 N -0.387 5.387 12 C 0.029 3.971 13 H 0.110 0.890 14 C -0.193 4.193 15 C -0.118 4.118 16 H 0.097 0.903 17 C -0.141 4.141 18 C -0.152 4.152 19 C -0.153 4.153 20 C -0.137 4.137 21 C -0.133 4.133 22 H 0.095 0.905 23 H 0.088 0.912 24 H 0.218 0.782 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 14.284 -8.003 0.077 16.373 hybrid contribution -0.258 -2.473 -0.116 2.489 sum 14.026 -10.476 -0.039 17.506 Atomic orbital electron populations 1.70628 1.07681 1.32143 1.35686 1.27092 0.95250 1.04889 0.88238 0.82590 0.73266 0.70946 0.77795 1.21494 1.25182 1.20240 1.22011 0.91945 0.96797 1.53067 0.91296 1.18395 0.87747 0.80925 0.76799 1.90211 1.72410 1.33119 1.55247 1.45501 1.06306 1.13807 1.73117 1.21794 0.83613 0.98036 0.93619 0.89018 1.23461 1.01303 0.96616 0.97938 1.21603 0.98745 0.94479 0.96965 0.90339 1.20539 0.94324 0.98219 1.00994 1.21130 0.96385 1.00296 0.97429 1.21376 0.99228 0.97414 0.97248 1.21326 0.93176 0.97230 1.01997 1.22670 0.95815 0.97120 0.97692 0.90516 0.91178 0.78163 0.90264 0.91546 0.92794 0.92271 0.92449 0.92254 0.92074 0.92193 0.91804 0.91541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.43 13.64 55.55 0.76 -23.68 16 2 C 0.06 1.85 5.52 -17.37 -0.10 1.75 16 3 Si 1.12 29.95 26.39 -169.99 -4.49 25.46 16 4 H -0.29 -7.73 7.11 56.52 0.40 -7.33 16 5 H -0.32 -8.15 7.11 56.52 0.40 -7.74 16 6 H -0.28 -7.54 6.45 56.52 0.36 -7.18 16 7 C -0.60 -17.29 9.92 -35.63 -0.35 -17.65 16 8 H 0.07 1.95 8.06 -52.49 -0.42 1.53 16 9 C 0.55 15.02 7.49 -12.98 -0.10 14.92 16 10 O -0.62 -18.15 11.81 5.20 0.06 -18.08 16 11 N -0.74 -16.00 5.24 -54.09 -0.28 -16.29 16 12 C 0.14 2.52 3.76 -66.77 -0.25 2.26 16 13 H 0.09 1.89 7.34 -51.93 -0.38 1.51 16 14 C -0.15 -2.43 7.09 -26.10 -0.19 -2.61 16 15 C -0.10 -1.34 3.48 -92.04 -0.32 -1.66 16 16 H 0.08 1.10 7.83 -51.93 -0.41 0.69 16 17 C -0.10 -1.14 5.50 -28.67 -0.16 -1.30 16 18 C -0.11 -1.15 5.75 -27.63 -0.16 -1.31 16 19 C -0.12 -1.17 5.90 -26.94 -0.16 -1.33 16 20 C -0.10 -1.21 5.39 -26.73 -0.14 -1.35 16 21 C -0.11 -1.62 4.06 -90.14 -0.37 -1.98 16 22 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 23 H 0.28 7.81 8.72 -40.82 -0.36 7.45 16 24 H 0.39 7.55 8.37 -40.82 -0.34 7.21 16 25 H 0.08 1.14 7.41 -51.93 -0.38 0.75 16 26 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.61 7.94 -51.93 -0.41 0.19 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.83 7.19 -51.93 -0.37 0.46 16 LS Contribution 269.59 15.07 4.06 4.06 Total: -1.00 -31.30 269.59 -7.47 -38.77 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -5.29 Total: 0.01 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -2.29 Total: -10.26 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.47 Total: -39.96 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: 0.06 Total: -18.08 kcal Atomic # 14 Polarization: 29.95 SS G_CDS: -4.49 Total: 25.46 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -31.30 -7.47 -38.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712560815.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.196 kcal (2) G-P(sol) polarization free energy of solvation -31.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds