Wall clock time and date at job start Mon Mar 30 2020 02:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86798 * 119.99902 * 2 1 4 4 H 1.48492 * 109.47547 * 89.99360 * 3 2 1 5 5 H 1.48504 * 109.46997 * 329.99122 * 3 2 1 6 6 H 1.48503 * 109.46992 * 209.99554 * 3 2 1 7 7 C 1.40043 * 119.99669 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00557 * 12.79785 * 7 2 1 9 9 C 1.46384 * 119.99748 * 192.79394 * 7 2 1 10 10 O 1.21688 * 119.99718 * 8.47568 * 9 7 2 11 11 N 1.34774 * 119.99992 * 188.47383 * 9 7 2 12 12 C 1.46495 * 119.99967 * 179.97438 * 11 9 7 13 13 H 1.08997 * 112.89315 * 336.35735 * 12 11 9 14 14 C 1.53968 * 113.66364 * 107.82880 * 12 11 9 15 15 C 1.53239 * 86.25674 * 87.90896 * 14 12 11 16 16 H 1.08998 * 110.60606 * 274.81646 * 15 14 12 17 17 C 1.50504 * 115.70939 * 147.23253 * 15 14 12 18 18 C 1.51628 * 114.40155 * 290.07044 * 17 15 14 19 19 C 1.52603 * 111.07466 * 313.10015 * 18 17 15 20 20 C 1.52984 * 108.82966 * 63.70075 * 19 18 17 21 21 C 1.52537 * 87.67260 * 26.87883 * 15 14 12 22 22 H 1.09003 * 114.78883 * 218.37747 * 21 15 14 23 23 H 0.96999 * 120.00421 * 174.71755 * 1 2 3 24 24 H 0.97007 * 119.99752 * 359.97438 * 11 9 7 25 25 H 1.08998 * 113.74563 * 202.24328 * 14 12 11 26 26 H 1.08994 * 113.74670 * 333.57840 * 14 12 11 27 27 H 1.09000 * 108.49466 * 168.80007 * 17 15 14 28 28 H 1.08998 * 108.37390 * 51.25694 * 17 15 14 29 29 H 1.09000 * 109.15632 * 192.68389 * 18 17 15 30 30 H 1.09001 * 109.15495 * 73.50494 * 18 17 15 31 31 H 1.09002 * 109.57451 * 303.89978 * 19 18 17 32 32 H 1.09000 * 109.57547 * 183.50742 * 19 18 17 33 33 H 1.09000 * 109.51585 * 176.41207 * 20 19 18 34 34 H 1.09001 * 109.55682 * 56.27751 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4881 2.0466 1.4000 5 1 1.4382 2.6526 -0.7002 6 1 3.5383 1.4401 -0.7000 7 6 2.0069 -1.2128 0.0005 8 1 1.4870 -2.1366 -0.2062 9 6 3.4435 -1.2285 0.2813 10 8 3.9995 -0.2161 0.6644 11 7 4.1502 -2.3640 0.1155 12 6 5.5879 -2.3795 0.3959 13 1 6.0439 -1.3919 0.3275 14 6 5.9592 -3.1463 1.6785 15 6 6.0255 -4.3949 0.7927 16 1 5.0364 -4.8389 0.6809 17 6 7.0435 -5.4277 1.1954 18 6 8.4836 -5.0062 0.9774 19 6 8.6736 -4.3988 -0.4096 20 6 7.8409 -3.1191 -0.5066 21 6 6.3580 -3.4724 -0.3757 22 1 5.8993 -3.7525 -1.3241 23 1 -0.4851 -0.8364 -0.0773 24 1 3.7067 -3.1711 -0.1895 25 1 6.9213 -2.8559 2.1005 26 1 5.1601 -3.1756 2.4191 27 1 6.8589 -6.3368 0.6229 28 1 6.9052 -5.6524 2.2529 29 1 9.1305 -5.8776 1.0781 30 1 8.7584 -4.2686 1.7315 31 1 8.3421 -5.1086 -1.1676 32 1 9.7264 -4.1622 -0.5635 33 1 8.0179 -2.6417 -1.4704 34 1 8.1250 -2.4374 0.2951 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712560815.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:52 Heat of formation + Delta-G solvation = -76.361738 kcal Electronic energy + Delta-G solvation = -15549.155835 eV Core-core repulsion = 13058.898292 eV Total energy + Delta-G solvation = -2490.257543 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.73010 -39.41225 -35.87096 -35.06997 -33.12326 -32.01937 -28.52507 -27.01012 -25.07455 -23.53217 -22.33391 -21.10000 -20.11047 -18.71900 -17.45287 -17.26913 -16.36578 -16.02246 -15.64490 -15.15162 -15.10033 -14.69698 -14.41712 -14.23961 -13.76212 -13.57353 -12.98957 -12.80426 -12.59999 -12.26034 -12.12446 -11.88394 -11.71568 -11.42170 -11.14797 -11.02472 -10.79090 -10.68882 -10.15642 -9.61952 -9.23028 -7.15076 1.42128 1.51531 1.94215 2.15312 2.38439 2.82769 3.24655 3.50518 3.58386 3.82858 3.97518 4.18975 4.21636 4.43040 4.44818 4.54266 4.70259 4.73405 4.86534 4.89299 4.99256 5.11261 5.16380 5.20775 5.26570 5.35674 5.43979 5.46550 5.50058 5.59613 5.62913 5.88722 6.09931 6.62161 7.16097 8.01030 8.08488 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.057329 B = 0.006646 C = 0.006322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.290748 B = 4211.872982 C = 4427.776155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.031 3.969 3 Si 1.154 2.846 4 H -0.293 1.293 5 H -0.300 1.300 6 H -0.290 1.290 7 C -0.621 4.621 8 H 0.065 0.935 9 C 0.550 3.450 10 O -0.643 6.643 11 N -0.726 5.726 12 C 0.112 3.888 13 H 0.065 0.935 14 C -0.148 4.148 15 C -0.086 4.086 16 H 0.072 0.928 17 C -0.102 4.102 18 C -0.115 4.115 19 C -0.110 4.110 20 C -0.100 4.100 21 C -0.097 4.097 22 H 0.077 0.923 23 H 0.278 0.722 24 H 0.397 0.603 25 H 0.095 0.905 26 H 0.046 0.954 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.991 -11.645 -0.434 19.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.184 4.184 3 Si 0.984 3.016 4 H -0.220 1.220 5 H -0.229 1.229 6 H -0.217 1.217 7 C -0.657 4.657 8 H 0.083 0.917 9 C 0.356 3.644 10 O -0.537 6.537 11 N -0.375 5.375 12 C 0.006 3.994 13 H 0.083 0.917 14 C -0.187 4.187 15 C -0.105 4.105 16 H 0.091 0.909 17 C -0.139 4.139 18 C -0.152 4.152 19 C -0.147 4.147 20 C -0.138 4.138 21 C -0.116 4.116 22 H 0.095 0.905 23 H 0.088 0.912 24 H 0.231 0.769 25 H 0.114 0.886 26 H 0.065 0.935 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 16.103 -9.447 -0.101 18.670 hybrid contribution -0.791 -2.084 -0.055 2.230 sum 15.312 -11.532 -0.157 19.170 Atomic orbital electron populations 1.70637 1.07845 1.32292 1.36732 1.27802 0.95634 1.06775 0.88151 0.82167 0.72182 0.69872 0.77412 1.22015 1.22932 1.21730 1.22197 0.93180 0.96701 1.53657 0.91685 1.18300 0.87651 0.81938 0.76508 1.90189 1.72871 1.34432 1.56230 1.45240 1.07812 1.12658 1.71778 1.22138 0.81664 0.98369 0.97230 0.91707 1.23423 1.01294 0.97475 0.96503 1.21528 0.99536 0.94137 0.95291 0.90929 1.20533 0.94257 0.97609 1.01511 1.21154 0.95803 1.01098 0.97166 1.21361 0.99713 0.96082 0.97575 1.21363 0.91828 0.98581 1.02049 1.22635 0.96575 0.94823 0.97573 0.90453 0.91153 0.76886 0.88625 0.93491 0.91483 0.91733 0.90409 0.92501 0.91505 0.90490 0.91511 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.68 13.64 21.83 0.30 -49.38 16 2 C 0.03 1.82 5.52 85.30 0.47 2.29 16 3 Si 1.15 61.00 26.39 68.60 1.81 62.81 16 4 H -0.29 -15.59 7.11 99.48 0.71 -14.88 16 5 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 6 H -0.29 -15.87 6.45 99.48 0.64 -15.23 16 7 C -0.62 -36.03 9.92 24.83 0.25 -35.78 16 8 H 0.06 3.73 8.06 -2.91 -0.02 3.70 16 9 C 0.55 30.16 7.49 86.36 0.65 30.80 16 10 O -0.64 -38.23 11.81 -4.31 -0.05 -38.28 16 11 N -0.73 -31.53 5.24 -443.25 -2.32 -33.85 16 12 C 0.11 4.09 3.76 45.75 0.17 4.26 16 13 H 0.06 2.71 7.34 -2.39 -0.02 2.70 16 14 C -0.15 -4.52 7.09 31.00 0.22 -4.30 16 15 C -0.09 -2.15 3.48 -11.71 -0.04 -2.19 16 16 H 0.07 1.89 7.83 -2.39 -0.02 1.88 16 17 C -0.10 -1.91 5.50 29.34 0.16 -1.75 16 18 C -0.11 -1.86 5.75 30.01 0.17 -1.68 16 19 C -0.11 -1.83 5.90 30.46 0.18 -1.65 16 20 C -0.10 -2.21 5.39 30.59 0.16 -2.05 16 21 C -0.10 -2.59 4.06 -10.48 -0.04 -2.63 16 22 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 23 H 0.28 15.74 8.72 -92.71 -0.81 14.93 16 24 H 0.40 15.41 8.37 -92.70 -0.78 14.64 16 25 H 0.10 2.60 7.41 -2.39 -0.02 2.58 16 26 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.06 0.96 7.94 -2.39 -0.02 0.94 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.06 1.42 7.19 -2.39 -0.02 1.41 16 Total: -1.00 -66.52 269.59 2.29 -64.23 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 0.20 Total: 9.15 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: 2.35 Total: -14.67 kcal Atomic # 7 Polarization: -81.22 SS G_CDS: -2.02 Total: -83.24 kcal Atomic # 8 Polarization: -38.23 SS G_CDS: -0.05 Total: -38.28 kcal Atomic # 14 Polarization: 61.00 SS G_CDS: 1.81 Total: 62.81 kcal Total: -66.52 2.29 -64.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712560815.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.131 kcal (2) G-P(sol) polarization free energy of solvation -66.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds