Wall clock time and date at job start Mon Mar 30 2020 02:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86800 * 119.99732 * 2 1 4 4 H 1.48495 * 109.47206 * 270.00269 * 3 2 1 5 5 H 1.48499 * 109.47077 * 30.00758 * 3 2 1 6 6 H 1.48505 * 109.46922 * 150.00325 * 3 2 1 7 7 C 1.40047 * 120.00027 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99808 * 179.97438 * 7 2 1 9 9 C 1.46376 * 120.00364 * 359.97438 * 7 2 1 10 10 O 1.21696 * 119.99562 * 359.97438 * 9 7 2 11 11 N 1.34767 * 120.00245 * 179.97438 * 9 7 2 12 12 C 1.46506 * 120.00009 * 179.97438 * 11 9 7 13 13 C 1.52999 * 109.46981 * 179.97438 * 12 11 9 14 14 C 1.53006 * 109.47144 * 180.02562 * 13 12 11 15 15 H 1.08998 * 115.54561 * 29.41721 * 14 13 12 16 16 C 1.53000 * 117.49988 * 243.75381 * 14 13 12 17 17 C 1.52993 * 117.50097 * 175.08829 * 14 13 12 18 18 H 1.08998 * 117.50372 * 214.98185 * 17 14 13 19 19 C 1.53003 * 117.50041 * 0.02562 * 17 14 13 20 20 C 1.52996 * 117.50050 * 248.74573 * 19 17 14 21 21 C 1.52995 * 117.50173 * 180.08547 * 19 17 14 22 22 H 0.96997 * 120.00048 * 359.97438 * 1 2 3 23 23 H 0.96995 * 120.00489 * 0.02562 * 11 9 7 24 24 H 1.09001 * 109.46660 * 60.00135 * 12 11 9 25 25 H 1.08995 * 109.47280 * 300.00093 * 12 11 9 26 26 H 1.09001 * 109.47291 * 60.00549 * 13 12 11 27 27 H 1.08995 * 109.47672 * 300.00432 * 13 12 11 28 28 H 1.09002 * 117.50034 * 359.97438 * 16 14 13 29 29 H 1.08998 * 117.49964 * 144.99481 * 16 14 13 30 30 H 1.09006 * 115.54792 * 34.41763 * 19 17 14 31 31 H 1.09002 * 117.49849 * 0.02562 * 20 19 17 32 32 H 1.09006 * 117.49826 * 145.01454 * 20 19 17 33 33 H 1.09002 * 117.50458 * 214.98061 * 21 19 17 34 34 H 1.09000 * 117.49564 * 0.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.4881 2.0465 -1.4000 5 1 1.4381 2.6526 0.7002 6 1 3.5383 1.4402 0.7000 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2752 -2.4805 -0.0005 10 8 0.0582 -2.4805 0.0004 11 7 1.9490 -3.6476 -0.0016 12 6 1.2165 -4.9164 -0.0010 13 6 2.2108 -6.0793 -0.0031 14 6 1.4459 -7.4044 -0.0031 15 1 0.4684 -7.3829 -0.4850 16 6 1.6139 -8.3172 1.2132 17 6 2.2635 -8.6921 -0.1213 18 1 1.8239 -9.5180 -0.6805 19 6 3.7836 -8.5564 -0.2297 20 6 4.4327 -8.9279 -1.5645 21 6 4.6011 -9.8440 -0.3499 22 1 -0.4850 0.8400 0.0004 23 1 2.9190 -3.6477 -0.0020 24 1 0.5889 -4.9739 -0.8903 25 1 0.5909 -4.9744 0.8896 26 1 2.8388 -6.0220 0.8860 27 1 2.8362 -6.0212 -0.8939 28 1 2.2698 -7.9739 2.0133 29 1 0.7470 -8.8962 1.5315 30 1 4.2232 -7.7317 0.3314 31 1 3.7766 -9.2686 -2.3655 32 1 5.2994 -8.3478 -1.8814 33 1 5.5787 -9.8664 0.1318 34 1 4.0560 -10.7879 -0.3521 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712818089.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:39 Heat of formation + Delta-G solvation = -30.199092 kcal Electronic energy + Delta-G solvation = -14556.840240 eV Core-core repulsion = 12068.584460 eV Total energy + Delta-G solvation = -2488.255781 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.93245 -39.20509 -36.69175 -35.23768 -34.44802 -31.06407 -28.24470 -24.66571 -24.43449 -23.13100 -22.13409 -21.65981 -20.15468 -19.06813 -17.43774 -16.92708 -16.37133 -15.98394 -15.94750 -15.72513 -14.73829 -14.36744 -14.12821 -13.84823 -13.10758 -13.00265 -12.81562 -12.63888 -12.46586 -12.36107 -12.32076 -12.07498 -11.97299 -11.81260 -11.39413 -10.93380 -10.61909 -10.23719 -9.87071 -9.48627 -8.29297 -6.86444 1.40618 1.42634 1.58088 2.25347 2.46859 2.59701 3.11622 3.29750 3.59541 3.61669 3.83749 3.97783 4.12829 4.23220 4.31135 4.39135 4.44160 4.53456 4.66461 4.77220 4.84273 4.97611 5.06232 5.08383 5.19416 5.26505 5.31438 5.31606 5.37628 5.42728 5.87466 6.24219 6.27601 6.86124 7.55715 8.48860 8.67263 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.049471 B = 0.004634 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.854202 B = 6040.201718 C = 6433.774934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.026 3.974 3 Si 1.002 2.998 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.248 1.248 7 C -0.575 4.575 8 H 0.089 0.911 9 C 0.533 3.467 10 O -0.636 6.636 11 N -0.756 5.756 12 C 0.137 3.863 13 C -0.074 4.074 14 C -0.157 4.157 15 H 0.099 0.901 16 C -0.169 4.169 17 C -0.107 4.107 18 H 0.111 0.889 19 C -0.136 4.136 20 C -0.180 4.180 21 C -0.170 4.170 22 H 0.275 0.725 23 H 0.396 0.604 24 H 0.028 0.972 25 H 0.028 0.972 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.255 -15.861 -0.265 18.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.188 4.188 3 Si 0.820 3.180 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.171 1.171 7 C -0.611 4.611 8 H 0.107 0.893 9 C 0.337 3.663 10 O -0.523 6.523 11 N -0.411 5.411 12 C 0.013 3.987 13 C -0.112 4.112 14 C -0.176 4.176 15 H 0.118 0.882 16 C -0.206 4.206 17 C -0.125 4.125 18 H 0.129 0.871 19 C -0.154 4.154 20 C -0.217 4.217 21 C -0.206 4.206 22 H 0.085 0.915 23 H 0.229 0.771 24 H 0.046 0.954 25 H 0.047 0.953 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.114 0.886 29 H 0.121 0.879 30 H 0.118 0.882 31 H 0.113 0.887 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 9.208 -15.812 -0.261 18.300 hybrid contribution 0.181 0.745 -0.024 0.767 sum 9.389 -15.068 -0.285 17.756 Atomic orbital electron populations 1.70200 1.09655 1.28988 1.36491 1.27035 0.95547 1.05119 0.91129 0.84970 0.78727 0.74800 0.79459 1.18537 1.19767 1.17105 1.21463 0.94804 0.90076 1.54781 0.89282 1.18693 0.86885 0.84565 0.76116 1.90546 1.16335 1.88098 1.57355 1.45824 1.09341 1.04871 1.81062 1.20940 0.94959 0.84107 0.98718 1.21144 0.96591 0.90771 1.02701 1.22221 1.00469 0.90743 1.04151 0.88239 1.23193 1.03106 1.02837 0.91425 1.21859 0.92236 0.97735 1.00638 0.87060 1.21728 0.91988 0.99880 1.01794 1.23005 1.03085 1.03953 0.91669 1.23014 1.01513 0.94362 1.01755 0.91544 0.77077 0.95388 0.95348 0.90845 0.90648 0.88609 0.87857 0.88151 0.88657 0.88430 0.88036 0.88194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.60 11.83 21.84 0.26 -51.34 16 2 C 0.03 1.51 5.50 85.30 0.47 1.98 16 3 Si 1.00 41.42 29.56 68.60 2.03 43.44 16 4 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 5 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 6 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 7 C -0.57 -33.37 9.54 24.83 0.24 -33.13 16 8 H 0.09 4.60 7.85 -2.91 -0.02 4.57 16 9 C 0.53 32.18 7.75 86.36 0.67 32.85 16 10 O -0.64 -44.36 15.02 -4.34 -0.07 -44.42 16 11 N -0.76 -35.44 5.55 -467.40 -2.59 -38.03 16 12 C 0.14 5.58 5.63 86.38 0.49 6.07 16 13 C -0.07 -2.12 4.41 30.60 0.13 -1.98 16 14 C -0.16 -3.85 5.73 -10.79 -0.06 -3.91 16 15 H 0.10 2.57 8.08 -2.39 -0.02 2.55 16 16 C -0.17 -3.48 9.90 30.62 0.30 -3.18 16 17 C -0.11 -2.10 5.85 -10.77 -0.06 -2.16 16 18 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 19 C -0.14 -2.51 5.10 -10.80 -0.06 -2.56 16 20 C -0.18 -2.99 10.25 30.62 0.31 -2.68 16 21 C -0.17 -2.54 10.25 30.61 0.31 -2.23 16 22 H 0.27 15.51 8.29 -92.71 -0.77 14.75 16 23 H 0.40 15.73 8.45 -92.71 -0.78 14.94 16 24 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.07 1.95 7.62 -2.39 -0.02 1.93 16 27 H 0.07 2.05 8.03 -2.39 -0.02 2.03 16 28 H 0.10 1.96 8.03 -2.39 -0.02 1.94 16 29 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.10 1.97 7.35 -2.38 -0.02 1.95 16 31 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 33 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -75.83 292.03 2.67 -73.16 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: 0.30 Total: 28.14 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: 2.75 Total: -10.94 kcal Atomic # 7 Polarization: -87.03 SS G_CDS: -2.34 Total: -89.37 kcal Atomic # 8 Polarization: -44.36 SS G_CDS: -0.07 Total: -44.42 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.44 kcal Total: -75.83 2.67 -73.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712818089.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.956 kcal (2) G-P(sol) polarization free energy of solvation -75.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds