Wall clock time and date at job start Mon Mar 30 2020 02:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86794 * 119.99949 * 2 1 4 4 H 1.48498 * 109.46870 * 90.00578 * 3 2 1 5 5 H 1.48501 * 109.47085 * 210.00356 * 3 2 1 6 6 H 1.48490 * 109.47554 * 330.00416 * 3 2 1 7 7 C 1.40055 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99784 * 179.97438 * 7 2 1 9 9 C 1.46374 * 119.99881 * 359.97438 * 7 2 1 10 10 O 1.21691 * 120.00342 * 359.97438 * 9 7 2 11 11 N 1.34774 * 119.99951 * 180.02562 * 9 7 2 12 12 C 1.46504 * 120.00240 * 179.97438 * 11 9 7 13 13 C 1.52993 * 109.46982 * 180.02562 * 12 11 9 14 14 C 1.53009 * 109.46740 * 180.02562 * 13 12 11 15 15 H 1.08998 * 115.55141 * 330.71712 * 14 13 12 16 16 C 1.53001 * 117.49923 * 116.39012 * 14 13 12 17 17 C 1.53001 * 117.49640 * 185.01182 * 14 13 12 18 18 H 1.08998 * 117.49726 * 145.02096 * 17 14 13 19 19 C 1.52999 * 117.50200 * 359.97438 * 17 14 13 20 20 C 1.53003 * 117.50217 * 128.61552 * 19 17 14 21 21 C 1.52991 * 60.00455 * 252.51410 * 20 19 17 22 22 H 0.97001 * 119.99601 * 359.97438 * 1 2 3 23 23 H 0.97005 * 119.99841 * 359.97438 * 11 9 7 24 24 H 1.08994 * 109.47228 * 300.00265 * 12 11 9 25 25 H 1.09000 * 109.46642 * 59.99928 * 12 11 9 26 26 H 1.09002 * 109.47147 * 299.99866 * 13 12 11 27 27 H 1.09000 * 109.47551 * 60.00411 * 13 12 11 28 28 H 1.08992 * 117.50159 * 214.97327 * 16 14 13 29 29 H 1.09005 * 117.49789 * 0.02562 * 16 14 13 30 30 H 1.08997 * 115.55258 * 274.33365 * 19 17 14 31 31 H 1.09007 * 117.49280 * 0.02562 * 20 19 17 32 32 H 1.08997 * 117.49856 * 145.01811 * 20 19 17 33 33 H 1.09000 * 117.50037 * 252.51507 * 21 20 19 34 34 H 1.09000 * 117.50177 * 107.48228 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4883 2.0462 1.4001 5 1 3.5383 1.4401 -0.7001 6 1 1.4383 2.6526 -0.6999 7 6 2.0070 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0582 -2.4805 0.0004 11 7 1.9489 -3.6477 -0.0005 12 6 1.2164 -4.9165 0.0000 13 6 2.2106 -6.0793 0.0005 14 6 1.4455 -7.4044 0.0005 15 1 0.4675 -7.3826 0.4811 16 6 1.6151 -8.3180 -1.2150 17 6 2.2631 -8.6922 0.1195 18 1 1.8230 -9.5178 0.6787 19 6 3.7831 -8.5564 0.2289 20 6 4.4771 -9.2898 1.3785 21 6 4.3383 -7.7667 1.4160 22 1 -0.4849 0.8401 0.0004 23 1 2.9190 -3.6477 -0.0009 24 1 0.5901 -4.9740 0.8902 25 1 0.5894 -4.9743 -0.8897 26 1 2.8373 -6.0220 -0.8895 27 1 2.8373 -6.0213 0.8905 28 1 0.7488 -8.8976 -1.5338 29 1 2.2720 -7.9753 -2.0145 30 1 4.3180 -8.4840 -0.7180 31 1 3.8506 -9.8694 2.0567 32 1 5.4686 -9.7004 1.1879 33 1 5.2386 -7.1750 1.2500 34 1 3.6205 -7.3438 2.1189 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712818092.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:42 Heat of formation + Delta-G solvation = -5.743650 kcal Electronic energy + Delta-G solvation = -14703.521723 eV Core-core repulsion = 12216.326410 eV Total energy + Delta-G solvation = -2487.195313 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.03401 -37.18238 -35.46269 -33.43960 -32.26591 -29.45452 -26.18621 -23.81327 -23.05727 -22.20195 -21.05114 -19.69816 -19.03554 -17.08980 -15.71907 -15.47963 -15.17951 -14.58877 -14.41835 -13.92879 -13.68116 -12.91355 -12.39971 -12.25241 -11.67369 -11.52873 -11.34279 -11.26788 -11.12614 -10.96980 -10.83111 -10.57387 -10.48174 -10.38477 -10.18337 -9.67882 -9.39214 -8.81079 -7.55685 -7.41622 -6.14036 -4.59372 3.16685 3.23181 3.26793 3.56087 3.93184 4.14112 4.47866 4.64194 4.67768 4.84699 4.90382 5.05830 5.21290 5.29490 5.38381 5.53384 5.55569 5.74879 5.80110 5.84613 5.93456 5.94700 6.04494 6.07706 6.12878 6.20289 6.37739 6.71283 6.73388 7.47446 7.99711 8.18025 8.38649 9.06838 9.61112 10.65411 10.84594 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.047015 B = 0.004955 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.416775 B = 5648.945600 C = 6071.187349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.265 1.265 6 H -0.280 1.280 7 C -0.547 4.547 8 H 0.067 0.933 9 C 0.554 3.446 10 O -0.582 6.582 11 N -0.769 5.769 12 C 0.135 3.865 13 C -0.098 4.098 14 C -0.135 4.135 15 H 0.105 0.895 16 C -0.173 4.173 17 C -0.127 4.127 18 H 0.102 0.898 19 C -0.120 4.120 20 C -0.182 4.182 21 C -0.174 4.174 22 H 0.267 0.733 23 H 0.379 0.621 24 H 0.045 0.955 25 H 0.046 0.954 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.983 -14.979 0.649 16.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.189 1.189 6 H -0.205 1.205 7 C -0.584 4.584 8 H 0.085 0.915 9 C 0.357 3.643 10 O -0.465 6.465 11 N -0.424 5.424 12 C 0.010 3.990 13 C -0.135 4.135 14 C -0.154 4.154 15 H 0.123 0.877 16 C -0.209 4.209 17 C -0.145 4.145 18 H 0.120 0.880 19 C -0.138 4.138 20 C -0.219 4.219 21 C -0.211 4.211 22 H 0.078 0.922 23 H 0.210 0.790 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.121 0.879 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 6.883 -14.873 0.643 16.401 hybrid contribution 0.889 0.718 -0.024 1.143 sum 7.773 -14.155 0.619 16.160 Atomic orbital electron populations 1.70032 1.07062 1.27158 1.35574 1.25712 0.94601 1.00260 0.92642 0.86381 0.80142 0.81470 0.78790 1.19769 1.18944 1.20484 1.20901 0.93554 0.89498 1.54427 0.91484 1.18220 0.87212 0.82535 0.76308 1.90593 1.14140 1.86961 1.54848 1.46122 1.08486 1.05089 1.82728 1.20843 0.94042 0.83694 1.00425 1.21416 0.97862 0.91901 1.02352 1.22341 1.00184 0.90948 1.01907 0.87680 1.23113 1.02730 1.03684 0.91423 1.21815 0.92109 0.99165 1.01390 0.88014 1.21661 0.93129 1.05222 0.93793 1.22974 1.01690 0.95277 1.01922 1.23006 1.02976 0.93697 1.01402 0.92174 0.79003 0.93658 0.93575 0.91839 0.90858 0.89002 0.88773 0.87932 0.89010 0.89119 0.88810 0.88334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.57 11.83 55.55 0.66 -22.91 16 2 C 0.09 2.49 5.50 -17.36 -0.10 2.39 16 3 Si 0.91 20.43 29.56 -169.99 -5.02 15.41 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.55 -15.81 9.54 -35.63 -0.34 -16.15 16 8 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 9 C 0.55 16.27 7.75 -12.99 -0.10 16.17 16 10 O -0.58 -19.49 15.02 5.20 0.08 -19.41 16 11 N -0.77 -17.77 5.55 -61.72 -0.34 -18.11 16 12 C 0.14 2.68 5.63 -4.04 -0.02 2.66 16 13 C -0.10 -1.42 4.56 -26.73 -0.12 -1.54 16 14 C -0.14 -1.71 5.72 -90.61 -0.52 -2.23 16 15 H 0.11 1.35 8.07 -51.93 -0.42 0.94 16 16 C -0.17 -1.92 9.90 -26.73 -0.26 -2.18 16 17 C -0.13 -1.36 5.87 -90.62 -0.53 -1.89 16 18 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 19 C -0.12 -1.22 5.25 -90.61 -0.48 -1.70 16 20 C -0.18 -1.65 10.25 -26.73 -0.27 -1.92 16 21 C -0.17 -1.77 8.44 -26.73 -0.23 -2.00 16 22 H 0.27 7.41 8.29 -40.82 -0.34 7.07 16 23 H 0.38 7.64 8.45 -40.82 -0.35 7.30 16 24 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.06 0.90 7.87 -51.93 -0.41 0.49 16 27 H 0.07 1.02 5.63 -51.93 -0.29 0.73 16 28 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.09 1.04 8.03 -51.93 -0.42 0.62 16 30 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.10 1.08 7.30 -51.93 -0.38 0.70 16 LS Contribution 288.33 15.07 4.35 4.35 Total: -1.00 -34.16 288.33 -8.45 -42.61 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -5.19 Total: 6.47 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -2.97 Total: -8.40 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: 0.31 Total: -41.02 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: 0.08 Total: -19.41 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -34.16 -8.45 -42.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712818092.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.864 kcal (2) G-P(sol) polarization free energy of solvation -34.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds