Wall clock time and date at job start Mon Mar 30 2020 02:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86794 * 119.99949 * 2 1 4 4 H 1.48498 * 109.46870 * 90.00578 * 3 2 1 5 5 H 1.48501 * 109.47085 * 210.00356 * 3 2 1 6 6 H 1.48490 * 109.47554 * 330.00416 * 3 2 1 7 7 C 1.40055 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99784 * 179.97438 * 7 2 1 9 9 C 1.46374 * 119.99881 * 359.97438 * 7 2 1 10 10 O 1.21691 * 120.00342 * 359.97438 * 9 7 2 11 11 N 1.34774 * 119.99951 * 180.02562 * 9 7 2 12 12 C 1.46504 * 120.00240 * 179.97438 * 11 9 7 13 13 C 1.52993 * 109.46982 * 180.02562 * 12 11 9 14 14 C 1.53009 * 109.46740 * 180.02562 * 13 12 11 15 15 H 1.08998 * 115.55141 * 330.71712 * 14 13 12 16 16 C 1.53001 * 117.49923 * 116.39012 * 14 13 12 17 17 C 1.53001 * 117.49640 * 185.01182 * 14 13 12 18 18 H 1.08998 * 117.49726 * 145.02096 * 17 14 13 19 19 C 1.52999 * 117.50200 * 359.97438 * 17 14 13 20 20 C 1.53003 * 117.50217 * 128.61552 * 19 17 14 21 21 C 1.52991 * 60.00455 * 252.51410 * 20 19 17 22 22 H 0.97001 * 119.99601 * 359.97438 * 1 2 3 23 23 H 0.97005 * 119.99841 * 359.97438 * 11 9 7 24 24 H 1.08994 * 109.47228 * 300.00265 * 12 11 9 25 25 H 1.09000 * 109.46642 * 59.99928 * 12 11 9 26 26 H 1.09002 * 109.47147 * 299.99866 * 13 12 11 27 27 H 1.09000 * 109.47551 * 60.00411 * 13 12 11 28 28 H 1.08992 * 117.50159 * 214.97327 * 16 14 13 29 29 H 1.09005 * 117.49789 * 0.02562 * 16 14 13 30 30 H 1.08997 * 115.55258 * 274.33365 * 19 17 14 31 31 H 1.09007 * 117.49280 * 0.02562 * 20 19 17 32 32 H 1.08997 * 117.49856 * 145.01811 * 20 19 17 33 33 H 1.09000 * 117.50037 * 252.51507 * 21 20 19 34 34 H 1.09000 * 117.50177 * 107.48228 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4883 2.0462 1.4001 5 1 3.5383 1.4401 -0.7001 6 1 1.4383 2.6526 -0.6999 7 6 2.0070 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0582 -2.4805 0.0004 11 7 1.9489 -3.6477 -0.0005 12 6 1.2164 -4.9165 0.0000 13 6 2.2106 -6.0793 0.0005 14 6 1.4455 -7.4044 0.0005 15 1 0.4675 -7.3826 0.4811 16 6 1.6151 -8.3180 -1.2150 17 6 2.2631 -8.6922 0.1195 18 1 1.8230 -9.5178 0.6787 19 6 3.7831 -8.5564 0.2289 20 6 4.4771 -9.2898 1.3785 21 6 4.3383 -7.7667 1.4160 22 1 -0.4849 0.8401 0.0004 23 1 2.9190 -3.6477 -0.0009 24 1 0.5901 -4.9740 0.8902 25 1 0.5894 -4.9743 -0.8897 26 1 2.8373 -6.0220 -0.8895 27 1 2.8373 -6.0213 0.8905 28 1 0.7488 -8.8976 -1.5338 29 1 2.2720 -7.9753 -2.0145 30 1 4.3180 -8.4840 -0.7180 31 1 3.8506 -9.8694 2.0567 32 1 5.4686 -9.7004 1.1879 33 1 5.2386 -7.1750 1.2500 34 1 3.6205 -7.3438 2.1189 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712818092.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:42 Heat of formation + Delta-G solvation = -28.228199 kcal Electronic energy + Delta-G solvation = -14704.496727 eV Core-core repulsion = 12216.326410 eV Total energy + Delta-G solvation = -2488.170316 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.03966 -39.22033 -36.48659 -35.23890 -34.45158 -31.11687 -28.26513 -24.81725 -24.34696 -23.06745 -22.08610 -21.69176 -20.12362 -19.10200 -17.44087 -16.71921 -16.33867 -16.09997 -15.96570 -15.73353 -14.90805 -14.38501 -14.13079 -13.83504 -13.10450 -12.97970 -12.78503 -12.64122 -12.48690 -12.31775 -12.20256 -12.10073 -11.99365 -11.55147 -11.43779 -10.93213 -10.58208 -10.31817 -9.87242 -9.48069 -8.29188 -6.86240 1.40652 1.42645 1.58112 2.25450 2.47040 2.69445 3.07968 3.15462 3.61378 3.66501 3.87458 3.97222 4.14332 4.22456 4.31453 4.34421 4.51346 4.61212 4.69064 4.78915 4.85497 4.98053 5.07863 5.09215 5.20866 5.30672 5.31783 5.32932 5.38805 5.40231 5.87799 6.24620 6.28134 6.86279 7.56192 8.49147 8.67456 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.047015 B = 0.004955 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.416775 B = 5648.945600 C = 6071.187349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.027 3.973 3 Si 1.001 2.999 4 H -0.261 1.261 5 H -0.248 1.248 6 H -0.273 1.273 7 C -0.575 4.575 8 H 0.089 0.911 9 C 0.533 3.467 10 O -0.636 6.636 11 N -0.756 5.756 12 C 0.137 3.863 13 C -0.077 4.077 14 C -0.158 4.158 15 H 0.098 0.902 16 C -0.168 4.168 17 C -0.109 4.109 18 H 0.113 0.887 19 C -0.129 4.129 20 C -0.168 4.168 21 C -0.185 4.185 22 H 0.275 0.725 23 H 0.396 0.604 24 H 0.027 0.973 25 H 0.026 0.974 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.283 -15.312 0.587 18.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.188 4.188 3 Si 0.820 3.180 4 H -0.185 1.185 5 H -0.171 1.171 6 H -0.198 1.198 7 C -0.611 4.611 8 H 0.107 0.893 9 C 0.337 3.663 10 O -0.524 6.524 11 N -0.410 5.410 12 C 0.013 3.987 13 C -0.114 4.114 14 C -0.176 4.176 15 H 0.116 0.884 16 C -0.205 4.205 17 C -0.128 4.128 18 H 0.131 0.869 19 C -0.148 4.148 20 C -0.205 4.205 21 C -0.221 4.221 22 H 0.084 0.916 23 H 0.229 0.771 24 H 0.045 0.955 25 H 0.045 0.955 26 H 0.090 0.910 27 H 0.100 0.900 28 H 0.121 0.879 29 H 0.115 0.885 30 H 0.125 0.875 31 H 0.115 0.885 32 H 0.123 0.877 33 H 0.116 0.884 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.236 -15.263 0.583 17.849 hybrid contribution 0.154 0.742 0.003 0.758 sum 9.390 -14.520 0.585 17.302 Atomic orbital electron populations 1.70205 1.09661 1.28974 1.36518 1.27034 0.95539 1.05110 0.91122 0.84973 0.78733 0.74811 0.79464 1.18531 1.17099 1.19777 1.21461 0.94805 0.90071 1.54771 0.89273 1.18695 0.86880 0.84572 0.76112 1.90544 1.16353 1.88102 1.57364 1.45821 1.09327 1.04845 1.81036 1.20941 0.94981 0.84214 0.98588 1.21219 0.96555 0.90582 1.03091 1.22231 1.00354 0.90861 1.04187 0.88416 1.23203 1.03215 1.02767 0.91307 1.21875 0.92394 0.97653 1.00830 0.86896 1.21720 0.92725 1.06037 0.94270 1.23053 1.02274 0.94364 1.00830 1.23013 1.03016 0.94809 1.01312 0.91555 0.77080 0.95477 0.95518 0.91049 0.90029 0.87886 0.88536 0.87496 0.88468 0.87745 0.88365 0.89427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.64 11.83 21.84 0.26 -51.38 16 2 C 0.03 1.52 5.50 85.31 0.47 1.99 16 3 Si 1.00 41.42 29.56 68.60 2.03 43.44 16 4 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 5 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 6 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 7 C -0.57 -33.35 9.54 24.83 0.24 -33.12 16 8 H 0.09 4.60 7.85 -2.92 -0.02 4.58 16 9 C 0.53 32.19 7.75 86.36 0.67 32.86 16 10 O -0.64 -44.41 15.02 -4.32 -0.06 -44.48 16 11 N -0.76 -35.42 5.55 -467.42 -2.59 -38.02 16 12 C 0.14 5.60 5.63 86.38 0.49 6.09 16 13 C -0.08 -2.20 4.56 30.59 0.14 -2.06 16 14 C -0.16 -3.87 5.72 -10.79 -0.06 -3.93 16 15 H 0.10 2.54 8.07 -2.39 -0.02 2.52 16 16 C -0.17 -3.45 9.90 30.60 0.30 -3.15 16 17 C -0.11 -2.14 5.87 -10.79 -0.06 -2.20 16 18 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 19 C -0.13 -2.34 5.25 -10.79 -0.06 -2.40 16 20 C -0.17 -2.61 10.25 30.59 0.31 -2.29 16 21 C -0.18 -3.42 8.44 30.59 0.26 -3.16 16 22 H 0.27 15.52 8.29 -92.71 -0.77 14.75 16 23 H 0.40 15.75 8.45 -92.70 -0.78 14.97 16 24 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.07 1.93 7.87 -2.39 -0.02 1.91 16 27 H 0.08 2.20 5.63 -2.39 -0.01 2.18 16 28 H 0.10 1.88 8.14 -2.39 -0.02 1.87 16 29 H 0.10 1.95 8.03 -2.38 -0.02 1.93 16 30 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 32 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.09 1.82 7.30 -2.39 -0.02 1.80 16 Total: -1.00 -75.83 288.33 2.62 -73.21 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: 0.30 Total: 28.58 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: 2.69 Total: -11.36 kcal Atomic # 7 Polarization: -87.06 SS G_CDS: -2.34 Total: -89.40 kcal Atomic # 8 Polarization: -44.41 SS G_CDS: -0.06 Total: -44.48 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.44 kcal Total: -75.83 2.62 -73.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712818092.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.983 kcal (2) G-P(sol) polarization free energy of solvation -75.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds