Wall clock time and date at job start Mon Mar 30 2020 02:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86795 * 120.00156 * 2 1 4 4 H 1.48494 * 109.47180 * 274.98395 * 3 2 1 5 5 H 1.48499 * 109.47119 * 34.98978 * 3 2 1 6 6 H 1.48501 * 109.46813 * 154.98554 * 3 2 1 7 7 C 1.40056 * 119.99393 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99382 * 186.14511 * 7 2 1 9 9 C 1.46362 * 120.00440 * 6.15448 * 7 2 1 10 10 O 1.21691 * 119.99901 * 353.93313 * 9 7 2 11 11 N 1.34782 * 120.00361 * 173.93710 * 9 7 2 12 12 C 1.46497 * 119.99996 * 179.71900 * 11 9 7 13 13 C 1.53000 * 109.46749 * 180.27335 * 12 11 9 14 14 C 1.53003 * 109.47159 * 180.02562 * 13 12 11 15 15 H 1.09003 * 115.54839 * 29.33190 * 14 13 12 16 16 C 1.52996 * 117.50296 * 243.62708 * 14 13 12 17 17 C 1.52994 * 117.50288 * 175.00233 * 14 13 12 18 18 H 1.09006 * 117.49780 * 359.97317 * 17 14 13 19 19 C 1.52999 * 117.50237 * 214.98252 * 17 14 13 20 20 C 1.52999 * 117.49969 * 128.61957 * 19 17 14 21 21 C 1.53004 * 117.50021 * 59.99441 * 19 17 14 22 22 H 0.97002 * 119.99771 * 359.97438 * 1 2 3 23 23 H 0.96999 * 119.99395 * 359.97438 * 11 9 7 24 24 H 1.08996 * 109.47422 * 300.27457 * 12 11 9 25 25 H 1.09006 * 109.47137 * 60.28200 * 12 11 9 26 26 H 1.08995 * 109.47696 * 299.99916 * 13 12 11 27 27 H 1.08997 * 109.47184 * 60.00572 * 13 12 11 28 28 H 1.09003 * 117.49931 * 359.97438 * 16 14 13 29 29 H 1.08998 * 117.50621 * 145.01962 * 16 14 13 30 30 H 1.09000 * 115.55154 * 274.32772 * 19 17 14 31 31 H 1.09002 * 117.49961 * 359.97438 * 20 19 17 32 32 H 1.09000 * 117.49969 * 145.02463 * 20 19 17 33 33 H 1.08994 * 117.50198 * 214.98161 * 21 19 17 34 34 H 1.09004 * 117.49408 * 0.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3829 2.1072 -1.3947 5 1 1.4949 2.6199 0.8028 6 1 3.5870 1.4119 0.5920 7 6 2.0069 -1.2130 -0.0005 8 1 3.0823 -1.2157 0.0996 9 6 1.2813 -2.4768 -0.1370 10 8 0.0644 -2.4826 -0.1389 11 7 1.9609 -3.6342 -0.2604 12 6 1.2347 -4.8997 -0.3908 13 6 2.2347 -6.0518 -0.5078 14 6 1.4763 -7.3736 -0.6446 15 1 0.4993 -7.3076 -1.1235 16 6 1.6479 -8.4055 0.4719 17 6 2.3003 -8.6386 -0.8922 18 1 3.3829 -8.5292 -0.9582 19 6 1.6899 -9.7144 -1.7927 20 6 2.5440 -10.2346 -2.9506 21 6 1.3489 -9.3214 -3.2315 22 1 -0.4850 0.8401 0.0004 23 1 2.9309 -3.6294 -0.2592 24 1 0.6074 -5.0509 0.4876 25 1 0.6093 -4.8695 -1.2831 26 1 2.8620 -5.9008 -1.3862 27 1 2.8600 -6.0821 0.3844 28 1 2.3015 -8.1429 1.3037 29 1 0.7838 -9.0186 0.7279 30 1 1.0297 -10.4249 -1.2952 31 1 3.5406 -9.8100 -3.0712 32 1 2.4459 -11.2875 -3.2151 33 1 0.4646 -9.7735 -3.6807 34 1 1.5598 -8.2965 -3.5367 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712818098.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:47 Heat of formation + Delta-G solvation = -8.414505 kcal Electronic energy + Delta-G solvation = -14457.687504 eV Core-core repulsion = 11970.376374 eV Total energy + Delta-G solvation = -2487.311130 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.86652 -37.24472 -35.71064 -33.40995 -32.27416 -29.44938 -26.20281 -23.83829 -22.83664 -22.50157 -20.52049 -20.01099 -19.37276 -17.11351 -15.85866 -15.38470 -15.12113 -14.59732 -14.45927 -13.99670 -13.45157 -13.11699 -12.38920 -12.19857 -11.75936 -11.51844 -11.48931 -11.21848 -11.14829 -10.97738 -10.84475 -10.73799 -10.50956 -10.39934 -10.18878 -9.80370 -9.38766 -8.81477 -7.56504 -7.43563 -6.15778 -4.59798 3.16100 3.22956 3.26691 3.49232 3.92179 4.13321 4.42583 4.62953 4.73498 4.74919 4.90560 5.05378 5.10760 5.28713 5.34767 5.50124 5.52441 5.70570 5.75084 5.82000 5.89829 5.90945 5.98159 6.02301 6.08855 6.17069 6.38048 6.68292 6.69720 7.47070 7.98564 8.16325 8.37837 9.06139 9.59487 10.64154 10.83169 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.060162 B = 0.004235 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.299409 B = 6610.394778 C = 6644.215223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.548 4.548 8 H 0.067 0.933 9 C 0.554 3.446 10 O -0.582 6.582 11 N -0.770 5.770 12 C 0.136 3.864 13 C -0.098 4.098 14 C -0.134 4.134 15 H 0.107 0.893 16 C -0.172 4.172 17 C -0.126 4.126 18 H 0.103 0.897 19 C -0.123 4.123 20 C -0.179 4.179 21 C -0.177 4.177 22 H 0.268 0.732 23 H 0.379 0.621 24 H 0.047 0.953 25 H 0.046 0.954 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.895 -16.022 -2.978 17.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.585 4.585 8 H 0.086 0.914 9 C 0.357 3.643 10 O -0.465 6.465 11 N -0.425 5.425 12 C 0.011 3.989 13 C -0.136 4.136 14 C -0.152 4.152 15 H 0.125 0.875 16 C -0.208 4.208 17 C -0.145 4.145 18 H 0.121 0.879 19 C -0.141 4.141 20 C -0.216 4.216 21 C -0.214 4.214 22 H 0.078 0.922 23 H 0.210 0.790 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.112 0.888 29 H 0.110 0.890 30 H 0.121 0.879 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.795 -15.921 -2.974 16.891 hybrid contribution 0.904 0.719 -0.013 1.155 sum 5.699 -15.202 -2.987 16.507 Atomic orbital electron populations 1.70036 1.07089 1.27181 1.35438 1.25713 0.94591 1.00290 0.92632 0.86363 0.80223 0.81533 0.78642 1.19827 1.20475 1.18911 1.20901 0.94082 0.89685 1.53794 0.91434 1.18224 0.87156 0.82478 0.76391 1.90593 1.14134 1.86531 1.55270 1.46139 1.08527 1.05930 1.81915 1.20823 0.93993 0.83661 1.00412 1.21388 0.97970 0.92460 1.01779 1.22358 1.00619 0.89720 1.02539 0.87504 1.23144 1.02789 1.03055 0.91857 1.21850 0.98043 0.96863 0.97698 0.87861 1.21743 1.02778 1.00004 0.89547 1.22968 0.96208 0.99352 1.03102 1.22981 0.99201 1.00794 0.98425 0.92166 0.78983 0.93433 0.93530 0.91544 0.91723 0.88761 0.88990 0.87932 0.88829 0.89077 0.89007 0.88406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.52 11.85 55.55 0.66 -22.86 16 2 C 0.09 2.48 5.49 -17.36 -0.10 2.39 16 3 Si 0.91 20.42 29.56 -169.99 -5.03 15.39 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.55 -15.83 9.53 -35.63 -0.34 -16.17 16 8 H 0.07 1.78 7.86 -52.48 -0.41 1.37 16 9 C 0.55 16.27 7.74 -12.99 -0.10 16.17 16 10 O -0.58 -19.46 15.05 5.20 0.08 -19.38 16 11 N -0.77 -17.77 5.55 -61.72 -0.34 -18.11 16 12 C 0.14 2.69 5.63 -4.04 -0.02 2.67 16 13 C -0.10 -1.42 5.61 -26.73 -0.15 -1.57 16 14 C -0.13 -1.69 5.38 -90.62 -0.49 -2.18 16 15 H 0.11 1.42 8.07 -51.93 -0.42 1.00 16 16 C -0.17 -1.90 9.90 -26.74 -0.26 -2.17 16 17 C -0.13 -1.36 5.59 -90.63 -0.51 -1.87 16 18 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 19 C -0.12 -1.21 5.87 -90.62 -0.53 -1.74 16 20 C -0.18 -1.58 10.25 -26.73 -0.27 -1.85 16 21 C -0.18 -1.71 10.18 -26.73 -0.27 -1.98 16 22 H 0.27 7.40 8.29 -40.82 -0.34 7.06 16 23 H 0.38 7.62 8.45 -40.82 -0.35 7.28 16 24 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.06 0.89 7.88 -51.93 -0.41 0.48 16 28 H 0.09 1.01 8.03 -51.93 -0.42 0.60 16 29 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 294.51 15.07 4.44 4.44 Total: -1.00 -34.14 294.51 -8.60 -42.74 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -5.36 Total: 6.09 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -3.04 Total: -8.31 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: 0.32 Total: -40.97 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: 0.08 Total: -19.38 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.03 Total: 15.39 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -34.14 -8.60 -42.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712818098.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.323 kcal (2) G-P(sol) polarization free energy of solvation -34.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds