Wall clock time and date at job start Mon Mar 30 2020 02:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86795 * 120.00156 * 2 1 4 4 H 1.48494 * 109.47180 * 274.98395 * 3 2 1 5 5 H 1.48499 * 109.47119 * 34.98978 * 3 2 1 6 6 H 1.48501 * 109.46813 * 154.98554 * 3 2 1 7 7 C 1.40056 * 119.99393 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99382 * 186.14511 * 7 2 1 9 9 C 1.46362 * 120.00440 * 6.15448 * 7 2 1 10 10 O 1.21691 * 119.99901 * 353.93313 * 9 7 2 11 11 N 1.34782 * 120.00361 * 173.93710 * 9 7 2 12 12 C 1.46497 * 119.99996 * 179.71900 * 11 9 7 13 13 C 1.53000 * 109.46749 * 180.27335 * 12 11 9 14 14 C 1.53003 * 109.47159 * 180.02562 * 13 12 11 15 15 H 1.09003 * 115.54839 * 29.33190 * 14 13 12 16 16 C 1.52996 * 117.50296 * 243.62708 * 14 13 12 17 17 C 1.52994 * 117.50288 * 175.00233 * 14 13 12 18 18 H 1.09006 * 117.49780 * 359.97317 * 17 14 13 19 19 C 1.52999 * 117.50237 * 214.98252 * 17 14 13 20 20 C 1.52999 * 117.49969 * 128.61957 * 19 17 14 21 21 C 1.53004 * 117.50021 * 59.99441 * 19 17 14 22 22 H 0.97002 * 119.99771 * 359.97438 * 1 2 3 23 23 H 0.96999 * 119.99395 * 359.97438 * 11 9 7 24 24 H 1.08996 * 109.47422 * 300.27457 * 12 11 9 25 25 H 1.09006 * 109.47137 * 60.28200 * 12 11 9 26 26 H 1.08995 * 109.47696 * 299.99916 * 13 12 11 27 27 H 1.08997 * 109.47184 * 60.00572 * 13 12 11 28 28 H 1.09003 * 117.49931 * 359.97438 * 16 14 13 29 29 H 1.08998 * 117.50621 * 145.01962 * 16 14 13 30 30 H 1.09000 * 115.55154 * 274.32772 * 19 17 14 31 31 H 1.09002 * 117.49961 * 359.97438 * 20 19 17 32 32 H 1.09000 * 117.49969 * 145.02463 * 20 19 17 33 33 H 1.08994 * 117.50198 * 214.98161 * 21 19 17 34 34 H 1.09004 * 117.49408 * 0.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3829 2.1072 -1.3947 5 1 1.4949 2.6199 0.8028 6 1 3.5870 1.4119 0.5920 7 6 2.0069 -1.2130 -0.0005 8 1 3.0823 -1.2157 0.0996 9 6 1.2813 -2.4768 -0.1370 10 8 0.0644 -2.4826 -0.1389 11 7 1.9609 -3.6342 -0.2604 12 6 1.2347 -4.8997 -0.3908 13 6 2.2347 -6.0518 -0.5078 14 6 1.4763 -7.3736 -0.6446 15 1 0.4993 -7.3076 -1.1235 16 6 1.6479 -8.4055 0.4719 17 6 2.3003 -8.6386 -0.8922 18 1 3.3829 -8.5292 -0.9582 19 6 1.6899 -9.7144 -1.7927 20 6 2.5440 -10.2346 -2.9506 21 6 1.3489 -9.3214 -3.2315 22 1 -0.4850 0.8401 0.0004 23 1 2.9309 -3.6294 -0.2592 24 1 0.6074 -5.0509 0.4876 25 1 0.6093 -4.8695 -1.2831 26 1 2.8620 -5.9008 -1.3862 27 1 2.8600 -6.0821 0.3844 28 1 2.3015 -8.1429 1.3037 29 1 0.7838 -9.0186 0.7279 30 1 1.0297 -10.4249 -1.2952 31 1 3.5406 -9.8100 -3.0712 32 1 2.4459 -11.2875 -3.2151 33 1 0.4646 -9.7735 -3.6807 34 1 1.5598 -8.2965 -3.5367 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712818098.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:47 Heat of formation + Delta-G solvation = -30.662028 kcal Electronic energy + Delta-G solvation = -14458.652229 eV Core-core repulsion = 11970.376374 eV Total energy + Delta-G solvation = -2488.275855 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.88089 -39.22476 -36.76384 -35.20817 -34.45063 -31.09030 -28.27210 -24.90562 -24.13680 -23.24492 -21.81697 -21.54916 -20.60031 -19.16881 -17.45251 -16.73786 -16.30468 -16.13540 -15.97147 -15.69521 -14.77401 -14.38861 -14.27476 -13.81291 -13.11748 -12.96603 -12.75992 -12.61671 -12.48224 -12.41328 -12.29420 -12.09610 -11.99925 -11.64983 -11.43884 -10.93744 -10.70441 -10.31033 -9.87393 -9.49422 -8.30616 -6.86323 1.40539 1.42103 1.58329 2.25082 2.46300 2.64156 3.07889 3.13804 3.59959 3.68796 3.86623 3.92423 4.14095 4.18266 4.27730 4.34261 4.48713 4.58975 4.65095 4.76340 4.82163 4.96430 5.05041 5.07209 5.17160 5.27986 5.29750 5.31772 5.32553 5.44007 5.87277 6.23983 6.27075 6.85824 7.55240 8.48190 8.66552 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.060162 B = 0.004235 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.299409 B = 6610.394778 C = 6644.215223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.026 3.974 3 Si 1.002 2.998 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.247 1.247 7 C -0.575 4.575 8 H 0.089 0.911 9 C 0.533 3.467 10 O -0.636 6.636 11 N -0.757 5.757 12 C 0.139 3.861 13 C -0.079 4.079 14 C -0.154 4.154 15 H 0.094 0.906 16 C -0.167 4.167 17 C -0.110 4.110 18 H 0.111 0.889 19 C -0.132 4.132 20 C -0.168 4.168 21 C -0.187 4.187 22 H 0.275 0.725 23 H 0.396 0.604 24 H 0.028 0.972 25 H 0.027 0.973 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.099 0.901 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.154 -16.402 -3.028 18.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.189 4.189 3 Si 0.821 3.179 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.170 1.170 7 C -0.612 4.612 8 H 0.108 0.892 9 C 0.338 3.662 10 O -0.524 6.524 11 N -0.411 5.411 12 C 0.014 3.986 13 C -0.117 4.117 14 C -0.173 4.173 15 H 0.112 0.888 16 C -0.203 4.203 17 C -0.128 4.128 18 H 0.129 0.871 19 C -0.150 4.150 20 C -0.204 4.204 21 C -0.224 4.224 22 H 0.085 0.915 23 H 0.230 0.770 24 H 0.047 0.953 25 H 0.045 0.955 26 H 0.094 0.906 27 H 0.096 0.904 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.128 0.872 31 H 0.115 0.885 32 H 0.124 0.876 33 H 0.117 0.883 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.107 -16.356 -3.027 18.089 hybrid contribution 0.170 0.761 -0.003 0.780 sum 7.278 -15.595 -3.031 17.475 Atomic orbital electron populations 1.70204 1.09680 1.29009 1.36386 1.27046 0.95540 1.05151 0.91131 0.84950 0.78896 0.74862 0.79196 1.18743 1.19715 1.16997 1.21459 0.95298 0.90265 1.54167 0.89249 1.18696 0.86825 0.84488 0.76227 1.90544 1.16363 1.87691 1.57772 1.45834 1.09379 1.05687 1.80232 1.20913 0.94992 0.84145 0.98564 1.21209 0.96673 0.90995 1.02793 1.22210 1.00564 0.89702 1.04798 0.88758 1.23239 1.03204 1.01895 0.92000 1.21889 0.98162 0.95294 0.97429 0.87086 1.21808 1.03556 1.00094 0.89580 1.23056 0.95866 0.99998 1.01526 1.23001 1.00298 1.00583 0.98534 0.91528 0.77011 0.95333 0.95489 0.90589 0.90435 0.88102 0.88217 0.87217 0.88499 0.87556 0.88283 0.89646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.53 11.85 21.84 0.26 -51.27 16 2 C 0.03 1.49 5.49 85.31 0.47 1.96 16 3 Si 1.00 41.40 29.56 68.60 2.03 43.43 16 4 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 5 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 6 H -0.25 -9.39 7.11 99.48 0.71 -8.68 16 7 C -0.58 -33.37 9.53 24.83 0.24 -33.14 16 8 H 0.09 4.61 7.86 -2.91 -0.02 4.59 16 9 C 0.53 32.15 7.74 86.36 0.67 32.82 16 10 O -0.64 -44.37 15.05 -4.32 -0.07 -44.44 16 11 N -0.76 -35.33 5.55 -467.41 -2.59 -37.92 16 12 C 0.14 5.61 5.63 86.38 0.49 6.10 16 13 C -0.08 -2.22 5.61 30.60 0.17 -2.04 16 14 C -0.15 -3.78 5.38 -10.80 -0.06 -3.84 16 15 H 0.09 2.56 8.07 -2.39 -0.02 2.54 16 16 C -0.17 -3.41 9.90 30.59 0.30 -3.11 16 17 C -0.11 -2.16 5.59 -10.80 -0.06 -2.22 16 18 H 0.11 2.04 8.14 -2.38 -0.02 2.02 16 19 C -0.13 -2.35 5.87 -10.79 -0.06 -2.42 16 20 C -0.17 -2.57 10.25 30.60 0.31 -2.25 16 21 C -0.19 -3.39 10.18 30.60 0.31 -3.08 16 22 H 0.27 15.50 8.29 -92.71 -0.77 14.73 16 23 H 0.40 15.63 8.45 -92.71 -0.78 14.85 16 24 H 0.03 1.25 8.14 -2.39 -0.02 1.24 16 25 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 26 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.08 1.99 7.88 -2.39 -0.02 1.97 16 28 H 0.10 1.95 8.03 -2.39 -0.02 1.93 16 29 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.08 1.75 8.14 -2.38 -0.02 1.74 16 Total: -1.00 -75.90 294.51 2.70 -73.21 By element: Atomic # 1 Polarization: 27.93 SS G_CDS: 0.29 Total: 28.22 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: 2.78 Total: -11.22 kcal Atomic # 7 Polarization: -86.86 SS G_CDS: -2.34 Total: -89.20 kcal Atomic # 8 Polarization: -44.37 SS G_CDS: -0.07 Total: -44.44 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Total: -75.90 2.70 -73.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712818098.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.543 kcal (2) G-P(sol) polarization free energy of solvation -75.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds