Wall clock time and date at job start Mon Mar 30 2020 02:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86809 * 120.00085 * 2 1 4 4 H 1.48498 * 109.47255 * 270.00764 * 3 2 1 5 5 H 1.48498 * 109.46685 * 30.00583 * 3 2 1 6 6 H 1.48497 * 109.46957 * 150.00032 * 3 2 1 7 7 C 1.37875 * 120.00242 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99847 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00307 * 179.97438 * 7 2 1 10 10 N 1.46498 * 109.47034 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99921 * 180.02562 * 10 9 7 12 12 O 1.21286 * 120.00032 * 359.97438 * 11 10 9 13 13 C 1.50697 * 120.00211 * 180.02562 * 11 10 9 14 14 C 1.52996 * 109.47303 * 179.97438 * 13 11 10 15 15 H 1.08998 * 115.56112 * 29.31008 * 14 13 11 16 16 C 1.53005 * 117.49838 * 243.62454 * 14 13 11 17 17 C 1.52999 * 59.99893 * 252.50529 * 16 14 13 18 18 H 1.09002 * 117.51736 * 107.47884 * 17 16 14 19 19 C 1.53003 * 117.50280 * 252.50834 * 17 16 14 20 20 C 1.53000 * 117.49792 * 128.62002 * 19 17 16 21 21 C 1.53002 * 60.02940 * 107.48056 * 20 19 17 22 22 H 0.97001 * 120.00073 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47006 * 60.00384 * 9 7 2 24 24 H 1.08998 * 109.47261 * 300.00155 * 9 7 2 25 25 H 0.96997 * 120.00320 * 359.97438 * 10 9 7 26 26 H 1.08999 * 109.46941 * 59.99901 * 13 11 10 27 27 H 1.08998 * 109.46902 * 299.99931 * 13 11 10 28 28 H 1.08994 * 117.49980 * 145.02335 * 16 14 13 29 29 H 1.08994 * 117.50020 * 359.97438 * 16 14 13 30 30 H 1.08999 * 115.55832 * 342.93619 * 19 17 16 31 31 H 1.09002 * 117.49833 * 214.98161 * 20 19 17 32 32 H 1.09002 * 117.49953 * 359.97438 * 20 19 17 33 33 H 1.09000 * 117.49996 * 107.50493 * 21 20 19 34 34 H 1.08999 * 117.49664 * 252.51862 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 7 3.9999 -2.5752 -0.0022 11 6 5.3249 -2.8215 -0.0024 12 8 6.1131 -1.8997 -0.0021 13 6 5.8273 -4.2423 -0.0041 14 6 7.3573 -4.2423 -0.0046 15 1 7.8277 -3.3854 0.4776 16 6 8.0633 -4.8439 -1.2214 17 6 8.0638 -5.5944 0.1119 18 1 7.4386 -6.4839 0.1894 19 6 9.3766 -5.6402 0.8964 20 6 9.3352 -5.2229 2.3678 21 6 9.5063 -6.6972 1.9960 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6805 0.8889 24 1 3.8746 -0.6800 -0.8911 25 1 3.3696 -3.3125 -0.0021 26 1 5.4641 -4.7550 -0.8948 27 1 5.4639 -4.7572 0.8852 28 1 8.9983 -4.3829 -1.5396 29 1 7.4379 -5.2400 -2.0213 30 1 10.2730 -5.3923 0.3280 31 1 10.2044 -4.7006 2.7675 32 1 8.3728 -4.9154 2.7769 33 1 10.4880 -7.1448 2.1510 34 1 8.6563 -7.3595 2.1601 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712906397.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:50 Heat of formation + Delta-G solvation = -4.264908 kcal Electronic energy + Delta-G solvation = -14547.482473 eV Core-core repulsion = 12060.351283 eV Total energy + Delta-G solvation = -2487.131190 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.36931 -38.22090 -35.46319 -34.23251 -32.35343 -29.79046 -27.38533 -23.76043 -22.60391 -22.34783 -20.98909 -19.85939 -19.61250 -17.26768 -16.15869 -15.61778 -15.46622 -15.03834 -14.76103 -13.95427 -13.84309 -13.27990 -12.91287 -12.53107 -12.30840 -11.78649 -11.73751 -11.53817 -11.23722 -11.00918 -10.89921 -10.75906 -10.69150 -9.96804 -9.87709 -9.55833 -9.47449 -9.12090 -8.77355 -8.12591 -6.21256 -4.23426 3.25357 3.28954 3.33703 3.42500 3.46631 3.91091 4.02131 4.33870 4.51507 4.72177 4.79813 4.95937 5.02429 5.14103 5.21624 5.31352 5.39562 5.49713 5.61057 5.73877 5.75333 5.80588 5.89293 5.97817 6.06587 6.14686 6.45098 6.82988 7.08524 7.25106 7.40953 8.14952 8.53911 8.75878 8.97155 9.39228 10.90729 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.055105 B = 0.004646 C = 0.004586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.000912 B = 6025.860544 C = 6104.023869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.079 0.921 9 C 0.220 3.780 10 N -0.708 5.708 11 C 0.501 3.499 12 O -0.558 6.558 13 C -0.112 4.112 14 C -0.124 4.124 15 H 0.119 0.881 16 C -0.170 4.170 17 C -0.127 4.127 18 H 0.104 0.896 19 C -0.122 4.122 20 C -0.176 4.176 21 C -0.179 4.179 22 H 0.267 0.733 23 H 0.024 0.976 24 H 0.020 0.980 25 H 0.396 0.604 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.481 -12.460 1.298 19.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.127 4.127 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.581 4.581 8 H 0.097 0.903 9 C 0.097 3.903 10 N -0.356 5.356 11 C 0.287 3.713 12 O -0.437 6.437 13 C -0.152 4.152 14 C -0.142 4.142 15 H 0.137 0.863 16 C -0.207 4.207 17 C -0.145 4.145 18 H 0.122 0.878 19 C -0.140 4.140 20 C -0.213 4.213 21 C -0.216 4.216 22 H 0.077 0.923 23 H 0.042 0.958 24 H 0.038 0.962 25 H 0.230 0.770 26 H 0.108 0.892 27 H 0.110 0.890 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.121 0.879 31 H 0.110 0.890 32 H 0.115 0.885 33 H 0.109 0.891 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 15.844 -11.653 1.300 19.711 hybrid contribution -0.072 0.522 -0.057 0.530 sum 15.772 -11.131 1.243 19.345 Atomic orbital electron populations 1.69882 1.06216 1.27420 1.49514 1.24803 0.94792 0.99193 0.93864 0.86809 0.80572 0.83212 0.79054 1.19845 1.20892 1.18516 1.21108 0.88579 0.95216 1.53246 0.90272 1.19480 0.95194 0.78875 0.96717 1.46198 1.05823 1.10960 1.72660 1.20467 0.82988 0.90921 0.76962 1.90632 1.55535 1.46512 1.51057 1.21237 0.94671 0.95465 1.03873 1.22167 0.92967 0.96739 1.02332 0.86284 1.23134 1.02786 1.03511 0.91240 1.21884 0.97040 0.96005 0.99543 0.87775 1.21742 0.97459 1.04391 0.90442 1.22971 1.03389 0.97305 0.97664 1.22980 1.02734 0.92235 1.03659 0.92268 0.95765 0.96228 0.77040 0.89202 0.88959 0.88873 0.88820 0.87878 0.89000 0.88462 0.89068 0.88827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.65 13.96 55.43 0.77 -25.88 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.88 21.62 27.47 -169.99 -4.67 16.96 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 7 C -0.54 -15.04 9.83 -34.44 -0.34 -15.38 16 8 H 0.08 2.27 7.84 -52.48 -0.41 1.86 16 9 C 0.22 5.48 4.50 -5.19 -0.02 5.45 16 10 N -0.71 -14.45 5.55 -61.47 -0.34 -14.79 16 11 C 0.50 9.56 7.83 -10.99 -0.09 9.47 16 12 O -0.56 -12.79 15.56 5.55 0.09 -12.70 16 13 C -0.11 -1.51 5.98 -27.89 -0.17 -1.68 16 14 C -0.12 -1.62 5.06 -90.62 -0.46 -2.08 16 15 H 0.12 1.85 7.31 -51.93 -0.38 1.47 16 16 C -0.17 -1.90 9.90 -26.73 -0.26 -2.17 16 17 C -0.13 -1.33 5.59 -90.62 -0.51 -1.84 16 18 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 19 C -0.12 -1.20 5.87 -90.58 -0.53 -1.73 16 20 C -0.18 -1.71 10.17 -26.73 -0.27 -1.98 16 21 C -0.18 -1.53 10.26 -26.69 -0.27 -1.80 16 22 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 23 H 0.02 0.64 7.20 -51.93 -0.37 0.27 16 24 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 25 H 0.40 7.06 8.32 -40.82 -0.34 6.72 16 26 H 0.09 1.04 7.87 -51.93 -0.41 0.63 16 27 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.09 0.96 8.03 -51.93 -0.42 0.55 16 30 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 291.33 15.07 4.39 4.39 Total: -1.00 -31.63 291.33 -8.05 -39.68 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -5.27 Total: 3.97 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -3.02 Total: -11.63 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: 0.43 Total: -40.67 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.09 Total: -12.70 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.63 -8.05 -39.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712906397.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.416 kcal (2) G-P(sol) polarization free energy of solvation -31.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds