Wall clock time and date at job start Mon Mar 30 2020 02:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86809 * 120.00085 * 2 1 4 4 H 1.48498 * 109.47255 * 270.00764 * 3 2 1 5 5 H 1.48498 * 109.46685 * 30.00583 * 3 2 1 6 6 H 1.48497 * 109.46957 * 150.00032 * 3 2 1 7 7 C 1.37875 * 120.00242 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99847 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00307 * 179.97438 * 7 2 1 10 10 N 1.46498 * 109.47034 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99921 * 180.02562 * 10 9 7 12 12 O 1.21286 * 120.00032 * 359.97438 * 11 10 9 13 13 C 1.50697 * 120.00211 * 180.02562 * 11 10 9 14 14 C 1.52996 * 109.47303 * 179.97438 * 13 11 10 15 15 H 1.08998 * 115.56112 * 29.31008 * 14 13 11 16 16 C 1.53005 * 117.49838 * 243.62454 * 14 13 11 17 17 C 1.52999 * 59.99893 * 252.50529 * 16 14 13 18 18 H 1.09002 * 117.51736 * 107.47884 * 17 16 14 19 19 C 1.53003 * 117.50280 * 252.50834 * 17 16 14 20 20 C 1.53000 * 117.49792 * 128.62002 * 19 17 16 21 21 C 1.53002 * 60.02940 * 107.48056 * 20 19 17 22 22 H 0.97001 * 120.00073 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47006 * 60.00384 * 9 7 2 24 24 H 1.08998 * 109.47261 * 300.00155 * 9 7 2 25 25 H 0.96997 * 120.00320 * 359.97438 * 10 9 7 26 26 H 1.08999 * 109.46941 * 59.99901 * 13 11 10 27 27 H 1.08998 * 109.46902 * 299.99931 * 13 11 10 28 28 H 1.08994 * 117.49980 * 145.02335 * 16 14 13 29 29 H 1.08994 * 117.50020 * 359.97438 * 16 14 13 30 30 H 1.08999 * 115.55832 * 342.93619 * 19 17 16 31 31 H 1.09002 * 117.49833 * 214.98161 * 20 19 17 32 32 H 1.09002 * 117.49953 * 359.97438 * 20 19 17 33 33 H 1.09000 * 117.49996 * 107.50493 * 21 20 19 34 34 H 1.08999 * 117.49664 * 252.51862 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 7 3.9999 -2.5752 -0.0022 11 6 5.3249 -2.8215 -0.0024 12 8 6.1131 -1.8997 -0.0021 13 6 5.8273 -4.2423 -0.0041 14 6 7.3573 -4.2423 -0.0046 15 1 7.8277 -3.3854 0.4776 16 6 8.0633 -4.8439 -1.2214 17 6 8.0638 -5.5944 0.1119 18 1 7.4386 -6.4839 0.1894 19 6 9.3766 -5.6402 0.8964 20 6 9.3352 -5.2229 2.3678 21 6 9.5063 -6.6972 1.9960 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6805 0.8889 24 1 3.8746 -0.6800 -0.8911 25 1 3.3696 -3.3125 -0.0021 26 1 5.4641 -4.7550 -0.8948 27 1 5.4639 -4.7572 0.8852 28 1 8.9983 -4.3829 -1.5396 29 1 7.4379 -5.2400 -2.0213 30 1 10.2730 -5.3923 0.3280 31 1 10.2044 -4.7006 2.7675 32 1 8.3728 -4.9154 2.7769 33 1 10.4880 -7.1448 2.1510 34 1 8.6563 -7.3595 2.1601 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712906397.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:49 Heat of formation + Delta-G solvation = -24.367018 kcal Electronic energy + Delta-G solvation = -14548.354166 eV Core-core repulsion = 12060.351283 eV Total energy + Delta-G solvation = -2488.002883 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.73493 -39.28663 -36.42027 -36.01197 -34.41163 -31.23197 -29.13463 -24.69509 -24.16010 -23.24285 -22.26341 -21.17992 -20.62250 -19.13654 -17.73817 -17.06446 -16.62354 -16.40678 -16.13795 -15.58849 -14.85886 -14.72255 -14.56331 -14.21838 -13.83200 -13.12961 -13.07774 -12.69615 -12.49713 -12.31053 -12.12908 -11.94665 -11.74236 -11.66073 -11.48516 -10.93174 -10.84531 -10.70507 -10.29447 -9.91787 -8.41271 -6.48258 1.31490 1.33707 1.46427 1.76523 2.26919 2.41788 2.76544 2.94027 3.11140 3.67011 3.84510 3.88475 4.06255 4.19065 4.27331 4.38903 4.58458 4.58932 4.71769 4.77614 4.83635 4.88315 4.97366 5.02191 5.06733 5.25493 5.28130 5.30907 5.32958 5.44671 5.55745 6.08239 6.52905 6.86608 7.14988 7.44091 8.73473 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.055105 B = 0.004646 C = 0.004586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.000912 B = 6025.860544 C = 6104.023869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.026 3.974 3 Si 0.937 3.063 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.263 1.263 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.230 3.770 10 N -0.708 5.708 11 C 0.499 3.501 12 O -0.599 6.599 13 C -0.097 4.097 14 C -0.148 4.148 15 H 0.088 0.912 16 C -0.168 4.168 17 C -0.104 4.104 18 H 0.122 0.878 19 C -0.135 4.135 20 C -0.189 4.189 21 C -0.163 4.163 22 H 0.273 0.727 23 H 0.010 0.990 24 H 0.009 0.991 25 H 0.409 0.591 26 H 0.117 0.883 27 H 0.117 0.883 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.641 -13.804 1.142 21.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.174 4.174 3 Si 0.761 3.239 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.187 1.187 7 C -0.585 4.585 8 H 0.078 0.922 9 C 0.106 3.894 10 N -0.358 5.358 11 C 0.287 3.713 12 O -0.481 6.481 13 C -0.136 4.136 14 C -0.167 4.167 15 H 0.106 0.894 16 C -0.205 4.205 17 C -0.122 4.122 18 H 0.140 0.860 19 C -0.154 4.154 20 C -0.226 4.226 21 C -0.200 4.200 22 H 0.082 0.918 23 H 0.028 0.972 24 H 0.027 0.973 25 H 0.245 0.755 26 H 0.135 0.865 27 H 0.135 0.865 28 H 0.110 0.890 29 H 0.126 0.874 30 H 0.124 0.876 31 H 0.114 0.886 32 H 0.104 0.896 33 H 0.123 0.877 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 17.003 -13.035 1.144 21.455 hybrid contribution -0.419 0.887 0.004 0.981 sum 16.584 -12.147 1.148 20.589 Atomic orbital electron populations 1.69978 1.07648 1.28633 1.50688 1.25602 0.95549 1.02664 0.93575 0.85857 0.79176 0.79387 0.79463 1.18956 1.19665 1.18712 1.21307 0.89950 0.94633 1.52627 0.92167 1.19078 0.93378 0.81429 0.95465 1.46078 1.06991 1.09557 1.73190 1.21467 0.81780 0.93021 0.75038 1.90613 1.56364 1.48540 1.52606 1.21232 0.94808 0.91334 1.06264 1.22017 0.92685 0.97520 1.04460 0.89390 1.23243 1.02648 1.03091 0.91534 1.21944 0.96836 0.94857 0.98554 0.86036 1.21828 0.97350 1.05628 0.90546 1.22988 1.03059 0.98823 0.97764 1.23069 1.03840 0.91459 1.01611 0.91811 0.97204 0.97276 0.75490 0.86464 0.86547 0.88964 0.87445 0.87601 0.88648 0.89577 0.87675 0.88046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.86 13.96 21.45 0.30 -55.56 16 2 C 0.03 1.51 5.47 84.65 0.46 1.97 16 3 Si 0.94 44.59 27.47 68.60 1.88 46.48 16 4 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 6 H -0.26 -12.49 6.54 99.48 0.65 -11.84 16 7 C -0.55 -30.53 9.83 25.60 0.25 -30.28 16 8 H 0.06 3.51 7.84 -2.91 -0.02 3.48 16 9 C 0.23 11.52 4.50 85.63 0.38 11.91 16 10 N -0.71 -28.51 5.55 -466.79 -2.59 -31.10 16 11 C 0.50 18.63 7.83 87.66 0.69 19.32 16 12 O -0.60 -27.66 15.56 -3.05 -0.05 -27.70 16 13 C -0.10 -2.39 5.98 29.85 0.18 -2.21 16 14 C -0.15 -3.67 5.06 -10.79 -0.05 -3.72 16 15 H 0.09 2.76 7.31 -2.39 -0.02 2.75 16 16 C -0.17 -3.40 9.90 30.60 0.30 -3.10 16 17 C -0.10 -1.91 5.59 -10.79 -0.06 -1.97 16 18 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 19 C -0.14 -2.38 5.87 -10.77 -0.06 -2.44 16 20 C -0.19 -3.43 10.17 30.60 0.31 -3.12 16 21 C -0.16 -2.35 10.26 30.62 0.31 -2.04 16 22 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 23 H 0.01 0.53 7.20 -2.39 -0.02 0.51 16 24 H 0.01 0.48 7.57 -2.39 -0.02 0.47 16 25 H 0.41 14.18 8.32 -92.71 -0.77 13.41 16 26 H 0.12 2.30 7.87 -2.39 -0.02 2.28 16 27 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.11 1.88 8.03 -2.39 -0.02 1.86 16 30 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.10 1.61 8.14 -2.39 -0.02 1.60 16 32 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -68.21 291.33 2.51 -65.70 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.25 Total: 17.88 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: 2.71 Total: -15.69 kcal Atomic # 7 Polarization: -84.37 SS G_CDS: -2.29 Total: -86.66 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.05 Total: -27.70 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.88 Total: 46.48 kcal Total: -68.21 2.51 -65.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712906397.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.330 kcal (2) G-P(sol) polarization free energy of solvation -68.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds