Wall clock time and date at job start Mon Mar 30 2020 02:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00518 * 2 1 4 4 H 1.48503 * 109.46965 * 239.99964 * 3 2 1 5 5 H 1.48503 * 109.46904 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47110 * 119.99765 * 3 2 1 7 7 C 1.38815 * 119.99451 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00020 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99969 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99629 * 180.02562 * 9 7 2 11 11 H 1.08995 * 112.82652 * 23.89247 * 10 9 7 12 12 C 1.53841 * 113.57945 * 252.69092 * 10 9 7 13 13 H 1.09002 * 116.26103 * 150.27567 * 12 10 9 14 14 C 1.54417 * 112.96896 * 13.15352 * 12 10 9 15 15 C 1.54445 * 104.16662 * 266.18075 * 14 12 10 16 16 O 1.44354 * 104.79497 * 24.40046 * 15 14 12 17 17 C 1.44260 * 105.53882 * 319.54791 * 16 15 14 18 18 H 1.09000 * 115.49964 * 270.35521 * 17 16 15 19 19 C 1.52833 * 113.66071 * 132.92457 * 17 16 15 20 20 C 1.53006 * 121.00149 * 44.81718 * 19 17 16 21 21 C 1.53936 * 86.79943 * 100.58309 * 20 19 17 22 22 C 1.52973 * 121.07994 * 153.10069 * 19 17 16 23 23 H 0.97000 * 119.99482 * 0.02562 * 1 2 3 24 24 H 0.96995 * 120.00557 * 0.02562 * 9 7 2 25 25 H 1.09001 * 110.49307 * 24.85118 * 14 12 10 26 26 H 1.09002 * 110.49159 * 147.37697 * 14 12 10 27 27 H 1.09001 * 110.37148 * 143.23683 * 15 14 12 28 28 H 1.09001 * 110.36834 * 265.46667 * 15 14 12 29 29 H 1.08997 * 113.65475 * 215.06230 * 20 19 17 30 30 H 1.09002 * 113.65698 * 346.10346 * 20 19 17 31 31 H 1.09000 * 113.58305 * 270.19620 * 21 20 19 32 32 H 1.08998 * 113.58147 * 139.39853 * 21 20 19 33 33 H 1.09001 * 113.65766 * 13.96403 * 22 19 17 34 34 H 1.09002 * 113.65453 * 144.91249 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2023 -0.0010 9 7 1.3253 -2.3881 -0.0016 10 6 2.0578 -3.6569 -0.0016 11 1 3.0644 -3.5640 0.4061 12 6 2.0032 -4.3990 -1.3481 13 1 2.8632 -5.0236 -1.5897 14 6 1.4728 -3.5184 -2.5003 15 6 -0.0405 -3.8242 -2.5439 16 8 -0.3631 -4.2793 -1.2125 17 6 0.7385 -5.1213 -0.8143 18 1 0.6387 -6.1764 -1.0692 19 6 1.2635 -4.8215 0.5893 20 6 0.3030 -4.6062 1.7607 21 6 0.6135 -6.0574 2.1697 22 6 1.9511 -5.9041 1.4232 23 1 -0.4849 0.8401 -0.0004 24 1 0.3554 -2.3881 -0.0023 25 1 1.6428 -2.4637 -2.2841 26 1 1.9473 -3.7953 -3.4418 27 1 -0.6032 -2.9220 -2.7835 28 1 -0.2487 -4.6058 -3.2747 29 1 0.6502 -3.8650 2.4804 30 1 -0.7315 -4.4497 1.4549 31 1 -0.0559 -6.7902 1.7192 32 1 0.7274 -6.1924 3.2453 33 1 2.2345 -6.7854 0.8478 34 1 2.7612 -5.5268 2.0473 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713473493.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:52 Heat of formation + Delta-G solvation = 19.586386 kcal Electronic energy + Delta-G solvation = -16340.474516 eV Core-core repulsion = 13854.377595 eV Total energy + Delta-G solvation = -2486.096920 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.75107 -37.05822 -34.29228 -32.35850 -30.00941 -29.49796 -25.23203 -24.68749 -23.67682 -22.37308 -21.45757 -19.20740 -17.70268 -17.11768 -15.71669 -15.36161 -14.99681 -14.43321 -14.21937 -13.83400 -13.22763 -12.68013 -12.61370 -11.95848 -11.80452 -11.39924 -11.15537 -10.98440 -10.83785 -10.75764 -10.42575 -10.19186 -10.05035 -9.90949 -9.66877 -9.45751 -9.27790 -8.74692 -8.72655 -6.88263 -5.72295 -3.00616 3.44677 3.49597 3.50406 4.20734 4.59926 4.94225 5.02662 5.10730 5.33173 5.40455 5.42593 5.66817 5.69604 5.76793 5.91280 5.94861 5.95649 6.10712 6.15240 6.21341 6.23969 6.41147 6.41623 6.47895 6.63019 6.72613 6.87004 6.91028 7.14197 7.16917 7.57961 7.73947 8.47076 9.58433 10.20627 10.58630 11.49080 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.030212 B = 0.010359 C = 0.009074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.546372 B = 2702.397913 C = 3085.095199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.010 4.010 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.243 4.243 8 H 0.068 0.932 9 N -0.691 5.691 10 C 0.191 3.809 11 H 0.061 0.939 12 C -0.177 4.177 13 H 0.089 0.911 14 C -0.138 4.138 15 C 0.058 3.942 16 O -0.348 6.348 17 C 0.074 3.926 18 H 0.072 0.928 19 C -0.118 4.118 20 C -0.109 4.109 21 C -0.143 4.143 22 C -0.107 4.107 23 H 0.255 0.745 24 H 0.395 0.605 25 H 0.105 0.895 26 H 0.050 0.950 27 H 0.088 0.912 28 H 0.040 0.960 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.493 -11.274 -1.084 11.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.207 4.207 3 Si 0.735 3.265 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.374 4.374 8 H 0.086 0.914 9 N -0.330 5.330 10 C 0.078 3.922 11 H 0.079 0.921 12 C -0.200 4.200 13 H 0.107 0.893 14 C -0.176 4.176 15 C -0.018 4.018 16 O -0.266 6.266 17 C 0.016 3.984 18 H 0.089 0.911 19 C -0.120 4.120 20 C -0.146 4.146 21 C -0.181 4.181 22 C -0.145 4.145 23 H 0.065 0.935 24 H 0.231 0.769 25 H 0.123 0.877 26 H 0.069 0.931 27 H 0.106 0.894 28 H 0.058 0.942 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.375 -11.001 -0.946 11.294 hybrid contribution 0.319 0.809 -0.318 0.926 sum 2.694 -10.192 -1.264 10.617 Atomic orbital electron populations 1.69689 1.04987 1.25614 1.57102 1.24729 0.95438 0.97486 1.03009 0.86322 0.78536 0.83830 0.77790 1.21373 1.21778 1.21344 1.19232 0.90923 0.84119 1.43143 0.91369 1.42166 1.06364 0.98563 1.85887 1.20835 0.94470 0.85775 0.91124 0.92134 1.24943 0.97334 0.98713 0.98973 0.89262 1.22741 0.94441 1.03954 0.96470 1.23298 0.96168 0.98104 0.84267 1.88983 1.41031 1.65589 1.31007 1.23513 0.86718 0.93026 0.95155 0.91058 1.23032 0.98194 0.98095 0.92640 1.22427 0.99796 0.95181 0.97220 1.22881 0.97424 0.98374 0.99393 1.22512 0.96818 0.97349 0.97772 0.93512 0.76864 0.87700 0.93144 0.89399 0.94208 0.89894 0.91431 0.90896 0.92129 0.92047 0.89789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.88 13.06 55.49 0.72 -27.16 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 3 Si 0.90 22.29 29.55 -169.99 -5.02 17.27 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.24 -6.65 9.31 -15.06 -0.14 -6.79 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.69 -17.28 3.43 -53.07 -0.18 -17.46 16 10 C 0.19 3.93 4.25 -67.56 -0.29 3.64 16 11 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 12 C -0.18 -3.19 5.08 -88.32 -0.45 -3.64 16 13 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 14 C -0.14 -2.60 6.27 -25.23 -0.16 -2.75 16 15 C 0.06 1.07 7.63 37.92 0.29 1.36 16 16 O -0.35 -7.13 9.70 -35.23 -0.34 -7.47 16 17 C 0.07 1.31 5.18 -25.70 -0.13 1.18 16 18 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 19 C -0.12 -2.07 0.83 -154.69 -0.13 -2.20 16 20 C -0.11 -1.95 7.34 -26.24 -0.19 -2.14 16 21 C -0.14 -2.03 8.08 -25.76 -0.21 -2.23 16 22 C -0.11 -1.52 7.84 -26.25 -0.21 -1.72 16 23 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 24 H 0.40 10.80 6.56 -40.82 -0.27 10.53 16 25 H 0.10 2.38 6.47 -51.93 -0.34 2.04 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 30 H 0.07 1.31 8.07 -51.93 -0.42 0.89 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 271.14 15.07 4.09 4.09 Total: -1.00 -29.25 271.14 -7.66 -36.92 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -5.22 Total: 9.50 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: -1.71 Total: -15.68 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: 0.54 Total: -44.62 kcal Atomic # 8 Polarization: -7.13 SS G_CDS: -0.34 Total: -7.47 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.25 -7.66 -36.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713473493.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.502 kcal (2) G-P(sol) polarization free energy of solvation -29.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds