Wall clock time and date at job start Mon Mar 30 2020 02:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00518 * 2 1 4 4 H 1.48503 * 109.46965 * 239.99964 * 3 2 1 5 5 H 1.48503 * 109.46904 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47110 * 119.99765 * 3 2 1 7 7 C 1.38815 * 119.99451 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00020 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99969 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99629 * 180.02562 * 9 7 2 11 11 H 1.08995 * 112.82652 * 23.89247 * 10 9 7 12 12 C 1.53841 * 113.57945 * 252.69092 * 10 9 7 13 13 H 1.09002 * 116.26103 * 150.27567 * 12 10 9 14 14 C 1.54417 * 112.96896 * 13.15352 * 12 10 9 15 15 C 1.54445 * 104.16662 * 266.18075 * 14 12 10 16 16 O 1.44354 * 104.79497 * 24.40046 * 15 14 12 17 17 C 1.44260 * 105.53882 * 319.54791 * 16 15 14 18 18 H 1.09000 * 115.49964 * 270.35521 * 17 16 15 19 19 C 1.52833 * 113.66071 * 132.92457 * 17 16 15 20 20 C 1.53006 * 121.00149 * 44.81718 * 19 17 16 21 21 C 1.53936 * 86.79943 * 100.58309 * 20 19 17 22 22 C 1.52973 * 121.07994 * 153.10069 * 19 17 16 23 23 H 0.97000 * 119.99482 * 0.02562 * 1 2 3 24 24 H 0.96995 * 120.00557 * 0.02562 * 9 7 2 25 25 H 1.09001 * 110.49307 * 24.85118 * 14 12 10 26 26 H 1.09002 * 110.49159 * 147.37697 * 14 12 10 27 27 H 1.09001 * 110.37148 * 143.23683 * 15 14 12 28 28 H 1.09001 * 110.36834 * 265.46667 * 15 14 12 29 29 H 1.08997 * 113.65475 * 215.06230 * 20 19 17 30 30 H 1.09002 * 113.65698 * 346.10346 * 20 19 17 31 31 H 1.09000 * 113.58305 * 270.19620 * 21 20 19 32 32 H 1.08998 * 113.58147 * 139.39853 * 21 20 19 33 33 H 1.09001 * 113.65766 * 13.96403 * 22 19 17 34 34 H 1.09002 * 113.65453 * 144.91249 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2023 -0.0010 9 7 1.3253 -2.3881 -0.0016 10 6 2.0578 -3.6569 -0.0016 11 1 3.0644 -3.5640 0.4061 12 6 2.0032 -4.3990 -1.3481 13 1 2.8632 -5.0236 -1.5897 14 6 1.4728 -3.5184 -2.5003 15 6 -0.0405 -3.8242 -2.5439 16 8 -0.3631 -4.2793 -1.2125 17 6 0.7385 -5.1213 -0.8143 18 1 0.6387 -6.1764 -1.0692 19 6 1.2635 -4.8215 0.5893 20 6 0.3030 -4.6062 1.7607 21 6 0.6135 -6.0574 2.1697 22 6 1.9511 -5.9041 1.4232 23 1 -0.4849 0.8401 -0.0004 24 1 0.3554 -2.3881 -0.0023 25 1 1.6428 -2.4637 -2.2841 26 1 1.9473 -3.7953 -3.4418 27 1 -0.6032 -2.9220 -2.7835 28 1 -0.2487 -4.6058 -3.2747 29 1 0.6502 -3.8650 2.4804 30 1 -0.7315 -4.4497 1.4549 31 1 -0.0559 -6.7902 1.7192 32 1 0.7274 -6.1924 3.2453 33 1 2.2345 -6.7854 0.8478 34 1 2.7612 -5.5268 2.0473 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713473493.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:52 Heat of formation + Delta-G solvation = 1.645635 kcal Electronic energy + Delta-G solvation = -16341.252485 eV Core-core repulsion = 13854.377595 eV Total energy + Delta-G solvation = -2486.874890 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.19442 -38.42033 -36.10677 -34.13685 -31.74188 -31.16539 -26.67585 -26.32367 -25.17738 -24.08591 -22.82290 -20.65716 -19.47576 -18.77848 -17.27343 -16.74595 -16.70554 -15.99514 -15.81998 -15.27535 -15.07151 -14.47098 -14.18143 -13.30539 -13.20396 -13.02893 -12.79998 -12.63920 -12.38741 -12.31641 -12.16785 -11.92901 -11.71208 -11.51345 -11.17615 -11.04551 -10.92201 -10.43317 -10.19283 -8.89274 -7.88987 -5.15922 1.45888 1.48429 1.54515 2.56211 2.83007 3.40510 3.52931 3.60015 3.89570 3.98892 4.09261 4.10889 4.25543 4.35609 4.46863 4.54808 4.62975 4.70178 4.87274 4.89384 4.97412 4.98883 5.02840 5.11711 5.19130 5.29483 5.32485 5.53958 5.56300 5.60703 5.74571 6.17404 6.33073 7.39201 8.22020 8.46275 9.33712 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.030212 B = 0.010359 C = 0.009074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.546372 B = 2702.397913 C = 3085.095199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.074 4.074 3 Si 0.968 3.032 4 H -0.279 1.279 5 H -0.299 1.299 6 H -0.280 1.280 7 C -0.235 4.235 8 H 0.073 0.927 9 N -0.703 5.703 10 C 0.165 3.835 11 H 0.057 0.943 12 C -0.164 4.164 13 H 0.124 0.876 14 C -0.137 4.137 15 C 0.058 3.942 16 O -0.381 6.381 17 C 0.076 3.924 18 H 0.106 0.894 19 C -0.119 4.119 20 C -0.123 4.123 21 C -0.125 4.125 22 C -0.091 4.091 23 H 0.248 0.752 24 H 0.380 0.620 25 H 0.058 0.942 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.041 0.959 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.067 -13.766 -1.444 14.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.266 4.266 3 Si 0.798 3.202 4 H -0.205 1.205 5 H -0.225 1.225 6 H -0.206 1.206 7 C -0.367 4.367 8 H 0.091 0.909 9 N -0.340 5.340 10 C 0.054 3.946 11 H 0.075 0.925 12 C -0.186 4.186 13 H 0.142 0.858 14 C -0.175 4.175 15 C -0.018 4.018 16 O -0.300 6.300 17 C 0.019 3.981 18 H 0.123 0.877 19 C -0.120 4.120 20 C -0.161 4.161 21 C -0.162 4.162 22 C -0.129 4.129 23 H 0.057 0.943 24 H 0.214 0.786 25 H 0.076 0.924 26 H 0.099 0.901 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.002 -13.542 -1.309 14.181 hybrid contribution -0.146 1.538 -0.201 1.558 sum 3.855 -12.004 -1.510 12.698 Atomic orbital electron populations 1.69863 1.06561 1.25685 1.59642 1.25474 0.96188 1.00719 1.04233 0.85289 0.77160 0.79699 0.78070 1.20498 1.22547 1.20625 1.19595 0.91225 0.85284 1.40642 0.90936 1.42220 1.05681 0.99714 1.86367 1.21196 0.94331 0.85237 0.93833 0.92526 1.24858 0.98766 0.98240 0.96716 0.85793 1.22654 0.95159 1.01345 0.98356 1.23345 0.95600 0.98428 0.84448 1.88962 1.42454 1.66509 1.32066 1.23697 0.85591 0.94103 0.94748 0.87673 1.23149 0.98062 0.97896 0.92909 1.22419 0.98336 0.97780 0.97576 1.22815 0.97405 0.95241 1.00747 1.22499 0.96668 0.96794 0.96905 0.94341 0.78629 0.92358 0.90081 0.91764 0.90570 0.92358 0.94044 0.89396 0.90427 0.88977 0.89307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.72 13.06 21.65 0.28 -60.43 16 2 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 3 Si 0.97 46.98 29.55 68.60 2.03 49.01 16 4 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 5 H -0.30 -14.73 7.11 99.48 0.71 -14.03 16 6 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 7 C -0.24 -13.20 9.31 84.03 0.78 -12.41 16 8 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 9 N -0.70 -36.08 3.43 -321.82 -1.10 -37.18 16 10 C 0.17 6.66 4.25 45.23 0.19 6.86 16 11 H 0.06 2.28 8.10 -2.39 -0.02 2.26 16 12 C -0.16 -5.48 5.08 -9.30 -0.05 -5.52 16 13 H 0.12 3.31 8.14 -2.39 -0.02 3.29 16 14 C -0.14 -4.99 6.27 31.57 0.20 -4.79 16 15 C 0.06 2.10 7.63 72.47 0.55 2.66 16 16 O -0.38 -15.46 9.70 -148.98 -1.44 -16.90 16 17 C 0.08 2.50 5.18 31.26 0.16 2.66 16 18 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 19 C -0.12 -3.96 0.83 -52.30 -0.04 -4.00 16 20 C -0.12 -4.40 7.34 30.91 0.23 -4.18 16 21 C -0.12 -3.14 8.08 31.23 0.25 -2.89 16 22 C -0.09 -2.23 7.84 30.91 0.24 -1.99 16 23 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 24 H 0.38 21.73 6.56 -92.71 -0.61 21.12 16 25 H 0.06 2.69 6.47 -2.39 -0.02 2.67 16 26 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 28 H 0.08 2.19 8.14 -2.39 -0.02 2.18 16 29 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.04 1.65 8.07 -2.39 -0.02 1.63 16 31 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -65.91 271.14 3.22 -62.69 By element: Atomic # 1 Polarization: 29.79 SS G_CDS: 0.47 Total: 30.27 kcal Atomic # 6 Polarization: -30.44 SS G_CDS: 2.99 Total: -27.45 kcal Atomic # 7 Polarization: -96.79 SS G_CDS: -0.82 Total: -97.61 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -1.44 Total: -16.90 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Total: -65.91 3.22 -62.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713473493.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.336 kcal (2) G-P(sol) polarization free energy of solvation -65.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds