Wall clock time and date at job start Mon Mar 30 2020 02:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99934 * 2 1 4 4 H 1.48501 * 109.46929 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46967 * 299.99710 * 3 2 1 6 6 H 1.48498 * 109.47304 * 60.00251 * 3 2 1 7 7 C 1.37878 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00280 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99767 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46867 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99553 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00088 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.99745 * 179.97438 * 11 10 9 14 14 C 1.53781 * 113.61417 * 179.97438 * 13 11 10 15 15 C 1.53786 * 87.17350 * 139.93966 * 14 13 11 16 16 C 1.52999 * 113.61361 * 220.06273 * 15 14 13 17 17 C 1.52996 * 117.49842 * 248.61923 * 16 15 14 18 18 C 1.52995 * 60.00145 * 252.50664 * 17 16 15 19 19 C 1.53782 * 113.61283 * 277.49692 * 13 11 10 20 20 H 0.97006 * 119.99578 * 359.97438 * 1 2 3 21 21 H 1.08994 * 109.47197 * 59.99865 * 9 7 2 22 22 H 1.09004 * 109.46854 * 299.99661 * 9 7 2 23 23 H 0.96993 * 120.00243 * 359.97438 * 10 9 7 24 24 H 1.08997 * 112.91128 * 48.74724 * 13 11 10 25 25 H 1.09002 * 113.61445 * 254.52965 * 14 13 11 26 26 H 1.09002 * 113.61408 * 25.34696 * 14 13 11 27 27 H 1.08993 * 113.61491 * 89.15923 * 15 14 13 28 28 H 1.09007 * 115.54830 * 34.32566 * 16 15 14 29 29 H 1.09004 * 117.50061 * 0.02562 * 17 16 15 30 30 H 1.09005 * 117.49776 * 145.01703 * 17 16 15 31 31 H 1.08995 * 117.50259 * 252.50485 * 18 17 16 32 32 H 1.09000 * 117.49749 * 107.48401 * 18 17 16 33 33 H 1.08997 * 113.61668 * 334.56418 * 19 13 11 34 34 H 1.08998 * 113.61674 * 105.38927 * 19 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 1.7537 -4.8833 0.0015 12 8 0.5614 -5.1049 0.0006 13 6 2.7330 -6.0288 0.0022 14 6 2.0624 -7.4126 0.0023 15 6 3.1537 -7.8574 -0.9857 16 6 2.6354 -8.7635 -2.1042 17 6 3.0857 -10.2257 -2.0946 18 6 3.6480 -9.2589 -3.1386 19 6 3.2740 -6.3775 -1.3945 20 1 -0.4850 0.8401 0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6241 -2.5567 0.8904 23 1 3.1567 -3.4354 0.0021 24 1 3.5114 -5.9211 0.7575 25 1 2.1113 -7.9214 0.9651 26 1 1.0599 -7.4120 -0.4256 27 1 4.0475 -8.2503 -0.5012 28 1 1.6244 -8.5502 -2.4516 29 1 3.7510 -10.5422 -1.2912 30 1 2.3710 -10.9747 -2.4357 31 1 3.3034 -9.3719 -4.1664 32 1 4.6836 -8.9392 -3.0222 33 1 2.6035 -6.0941 -2.2058 34 1 4.3004 -6.0497 -1.5596 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714424460.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:23 Heat of formation + Delta-G solvation = -11.928951 kcal Electronic energy + Delta-G solvation = -14743.756000 eV Core-core repulsion = 12256.292472 eV Total energy + Delta-G solvation = -2487.463528 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.95964 -37.89964 -35.71697 -34.10417 -32.27036 -27.98804 -26.14199 -25.53035 -22.94039 -22.39697 -21.28200 -19.70522 -19.13063 -17.13888 -15.87780 -15.77663 -15.14726 -14.84123 -14.55132 -14.16468 -13.70948 -12.91221 -12.43977 -12.32903 -12.01065 -11.90612 -11.68254 -11.60217 -11.16977 -10.94110 -10.89295 -10.66719 -10.53586 -10.28548 -10.07321 -9.75299 -9.35947 -8.86472 -8.72070 -7.83450 -6.15375 -4.22066 3.24147 3.31142 3.34360 3.39578 3.66854 4.13486 4.37649 4.62511 4.64080 4.68008 4.93367 4.96716 5.11326 5.19077 5.20803 5.35928 5.50819 5.68771 5.73799 5.85984 5.87077 5.94169 5.98849 6.09496 6.11731 6.31412 6.60736 7.34227 7.49485 7.54437 7.69849 7.99257 8.68611 8.81232 9.16810 9.44982 10.94946 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.059504 B = 0.004708 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.444988 B = 5945.352646 C = 6139.763993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.248 3.752 10 N -0.712 5.712 11 C 0.507 3.493 12 O -0.558 6.558 13 C -0.141 4.141 14 C -0.107 4.107 15 C -0.082 4.082 16 C -0.138 4.138 17 C -0.182 4.182 18 C -0.181 4.181 19 C -0.113 4.113 20 H 0.265 0.735 21 H 0.026 0.974 22 H 0.026 0.974 23 H 0.390 0.610 24 H 0.106 0.894 25 H 0.067 0.933 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.105 0.895 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.019 -15.530 -2.966 18.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.081 0.919 9 C 0.127 3.873 10 N -0.359 5.359 11 C 0.292 3.708 12 O -0.438 6.438 13 C -0.162 4.162 14 C -0.145 4.145 15 C -0.100 4.100 16 C -0.156 4.156 17 C -0.219 4.219 18 C -0.218 4.218 19 C -0.150 4.150 20 H 0.075 0.925 21 H 0.044 0.956 22 H 0.044 0.956 23 H 0.223 0.777 24 H 0.124 0.876 25 H 0.086 0.914 26 H 0.114 0.886 27 H 0.107 0.893 28 H 0.123 0.877 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.105 0.895 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.986 -15.518 -2.963 17.702 hybrid contribution 0.879 1.111 0.028 1.417 sum 8.865 -14.407 -2.935 17.169 Atomic orbital electron populations 1.69991 1.06118 1.27145 1.49095 1.24961 0.94909 0.99463 0.94736 0.86364 0.79841 0.82986 0.77744 1.19630 1.20800 1.20797 1.21278 0.93294 0.90492 1.52954 0.91865 1.19101 0.88412 0.82149 0.97650 1.46467 1.11012 1.06238 1.72189 1.20303 0.89225 0.84218 0.77094 1.90632 1.16947 1.84936 1.51249 1.22732 0.98985 0.94773 0.99710 1.22821 0.99102 0.93349 0.99203 1.22136 0.98737 0.93886 0.95259 1.22290 0.99176 0.95048 0.99074 1.22947 1.03957 0.92959 1.02071 1.22897 0.99159 1.04394 0.95316 1.22864 1.01386 0.95012 0.95781 0.92528 0.95634 0.95616 0.77750 0.87613 0.91441 0.88612 0.89312 0.87661 0.88966 0.89098 0.89042 0.88899 0.89529 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 7 C -0.54 -14.91 9.28 -34.44 -0.32 -15.23 16 8 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 9 C 0.25 6.71 5.43 -5.19 -0.03 6.68 16 10 N -0.71 -15.35 5.55 -61.47 -0.34 -15.69 16 11 C 0.51 10.35 7.35 -10.98 -0.08 10.27 16 12 O -0.56 -13.75 15.90 5.56 0.09 -13.66 16 13 C -0.14 -2.04 4.15 -90.96 -0.38 -2.42 16 14 C -0.11 -1.43 6.96 -25.92 -0.18 -1.61 16 15 C -0.08 -0.90 3.82 -89.69 -0.34 -1.24 16 16 C -0.14 -1.44 5.42 -90.62 -0.49 -1.93 16 17 C -0.18 -1.62 10.24 -26.74 -0.27 -1.89 16 18 C -0.18 -1.64 10.25 -26.73 -0.27 -1.91 16 19 C -0.11 -1.41 7.20 -25.80 -0.19 -1.59 16 20 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 21 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.39 7.24 8.32 -40.82 -0.34 6.90 16 24 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.10 1.48 7.38 -51.93 -0.38 1.10 16 27 H 0.09 0.86 8.13 -51.93 -0.42 0.43 16 28 H 0.11 1.19 8.14 -51.92 -0.42 0.76 16 29 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.09 1.22 8.05 -51.93 -0.42 0.80 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 290.36 15.07 4.38 4.38 Total: -1.00 -31.70 290.36 -8.14 -39.83 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -5.32 Total: 4.04 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -2.65 Total: -9.22 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: 0.40 Total: -41.34 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: 0.09 Total: -13.66 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.70 -8.14 -39.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714424460.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.903 kcal (2) G-P(sol) polarization free energy of solvation -31.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds