Wall clock time and date at job start Mon Mar 30 2020 03:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42900 * 110.05861 * 58.20675 * 9 7 2 11 11 C 1.53986 * 110.07918 * 296.57704 * 9 7 2 12 12 C 1.53281 * 108.42249 * 299.81012 * 11 9 7 13 13 C 1.52916 * 109.88019 * 299.24311 * 12 11 9 14 14 N 1.47314 * 109.78070 * 1.09744 * 13 12 11 15 15 C 1.47327 * 109.95079 * 297.92558 * 14 13 12 16 16 C 1.52926 * 109.74977 * 62.24631 * 15 14 13 17 17 C 1.47308 * 109.71757 * 58.60276 * 14 13 12 18 18 C 1.52342 * 118.49426 * 85.07117 * 17 14 13 19 19 C 1.52388 * 118.39488 * 154.78198 * 17 14 13 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 0.96700 * 114.00129 * 299.99986 * 10 9 7 22 22 H 1.09003 * 110.20983 * 60.50864 * 11 9 7 23 23 H 1.09000 * 109.40395 * 179.11655 * 12 11 9 24 24 H 1.09002 * 109.40473 * 59.36939 * 12 11 9 25 25 H 1.09000 * 109.42277 * 241.00155 * 13 12 11 26 26 H 1.09009 * 109.41713 * 121.19224 * 13 12 11 27 27 H 1.09001 * 109.42348 * 182.32175 * 15 14 13 28 28 H 1.08994 * 109.43225 * 302.15970 * 15 14 13 29 29 H 1.08996 * 109.39470 * 238.46969 * 16 15 14 30 30 H 1.08999 * 109.39692 * 118.73484 * 16 15 14 31 31 H 1.08998 * 117.51300 * 215.72218 * 18 17 14 32 32 H 1.08998 * 117.51360 * 0.82610 * 18 17 14 33 33 H 1.08992 * 117.51659 * 359.00605 * 19 17 14 34 34 H 1.09000 * 117.51369 * 144.13164 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 0.3983 -2.5677 -1.1501 11 6 0.4207 -2.6361 1.2843 12 6 1.3767 -2.6015 2.4819 13 6 2.3631 -3.7667 2.3936 14 7 2.1055 -4.5464 1.1706 15 6 0.7493 -5.1203 1.2166 16 6 -0.2862 -3.9960 1.2644 17 6 2.2352 -3.6757 -0.0105 18 6 3.6209 -3.4594 -0.6053 19 6 2.5906 -4.3157 -1.3471 20 1 -0.4850 0.8401 -0.0004 21 1 -0.2623 -1.8627 -1.1912 22 1 -0.3014 -1.8226 1.3554 23 1 0.8034 -2.6816 3.4054 24 1 1.9268 -1.6604 2.4791 25 1 2.2433 -4.4099 3.2654 26 1 3.3814 -3.3784 2.3681 27 1 0.5828 -5.7287 0.3277 28 1 0.6492 -5.7433 2.1053 29 1 -0.8937 -4.1014 2.1633 30 1 -0.9282 -4.0576 0.3858 31 1 3.8451 -2.4742 -1.0143 32 1 4.4575 -3.9745 -0.1332 33 1 2.7495 -5.3938 -1.3627 34 1 2.1371 -3.8936 -2.2439 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716060427.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:30 Heat of formation + Delta-G solvation = -15.843337 kcal Electronic energy + Delta-G solvation = -16994.224586 eV Core-core repulsion = 14506.591318 eV Total energy + Delta-G solvation = -2487.633268 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.03607 -35.14573 -34.65608 -32.15539 -30.28162 -30.02215 -26.94200 -24.64172 -22.22876 -21.52341 -21.22030 -19.74790 -16.92225 -16.51469 -15.66609 -15.28778 -14.75562 -14.30719 -13.70827 -13.67415 -12.72353 -12.25776 -12.13922 -11.86843 -11.43593 -11.36334 -11.05386 -10.91838 -10.70178 -10.55978 -10.40741 -10.04736 -9.94636 -9.81220 -9.41914 -9.26580 -8.81875 -8.55510 -7.92718 -7.50444 -6.16621 -4.25388 3.21614 3.29356 3.32242 4.29860 4.65842 4.73390 5.09501 5.48110 5.68224 5.78540 5.89961 6.00163 6.01134 6.06125 6.16998 6.27772 6.33559 6.41409 6.49610 6.52975 6.61420 6.78743 6.79394 6.89880 7.13393 7.14792 7.30235 7.45781 7.59418 7.71636 7.86180 7.94427 8.25113 8.76011 9.41519 9.56397 10.86451 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.031485 B = 0.013317 C = 0.012425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.095647 B = 2102.091636 C = 2252.940668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.895 3.105 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.066 0.934 9 C 0.276 3.724 10 O -0.585 6.585 11 C -0.107 4.107 12 C -0.131 4.131 13 C 0.054 3.946 14 N -0.489 5.489 15 C 0.054 3.946 16 C -0.144 4.144 17 C 0.050 3.950 18 C -0.156 4.156 19 C -0.157 4.157 20 H 0.266 0.734 21 H 0.380 0.620 22 H 0.099 0.901 23 H 0.038 0.962 24 H 0.074 0.926 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.042 0.958 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.653 -5.216 2.502 6.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.132 4.132 3 Si 0.723 3.277 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.084 0.916 9 C 0.234 3.766 10 O -0.394 6.394 11 C -0.126 4.126 12 C -0.170 4.170 13 C -0.075 4.075 14 N -0.210 5.210 15 C -0.075 4.075 16 C -0.183 4.183 17 C -0.040 4.040 18 C -0.194 4.194 19 C -0.194 4.194 20 H 0.076 0.924 21 H 0.230 0.770 22 H 0.117 0.883 23 H 0.057 0.943 24 H 0.092 0.908 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.121 0.879 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.256 -6.062 2.359 6.885 hybrid contribution -0.624 2.141 0.381 2.262 sum 1.632 -3.922 2.740 5.055 Atomic orbital electron populations 1.69588 1.05918 1.27235 1.51334 1.24998 0.94919 0.99258 0.94016 0.86543 0.79906 0.83053 0.78243 1.20549 1.21226 1.19808 1.21754 0.93811 0.90448 1.50059 0.91569 1.18542 0.85700 0.90213 0.82096 1.86093 1.50899 1.55547 1.46884 1.21869 0.98445 0.95450 0.96868 1.21962 0.97949 0.99803 0.97316 1.22145 0.99420 0.94120 0.91781 1.63817 1.25107 1.30397 1.01677 1.22129 0.88189 0.96362 1.00781 1.22075 0.98543 0.97171 1.00551 1.21589 0.97349 0.95330 0.89723 1.22899 0.91777 1.01210 1.03467 1.22708 1.03202 0.97439 0.96073 0.92413 0.76982 0.88307 0.94340 0.90755 0.92347 0.91401 0.91600 0.92163 0.93928 0.92018 0.87927 0.90132 0.90321 0.88461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.56 9.93 55.43 0.55 -23.01 16 2 C 0.07 1.79 5.26 -17.82 -0.09 1.69 16 3 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.52 -13.47 6.43 -34.44 -0.22 -13.70 16 8 H 0.07 1.72 5.80 -52.49 -0.30 1.41 16 9 C 0.28 6.64 0.51 -91.05 -0.05 6.60 16 10 O -0.59 -14.96 11.28 -35.23 -0.40 -15.35 16 11 C -0.11 -2.43 2.58 -89.82 -0.23 -2.66 16 12 C -0.13 -2.74 5.43 -26.63 -0.14 -2.88 16 13 C 0.05 1.02 6.04 -3.64 -0.02 1.00 16 14 N -0.49 -9.77 5.42 -218.57 -1.18 -10.95 16 15 C 0.05 1.01 6.04 -3.63 -0.02 0.99 16 16 C -0.14 -2.92 5.53 -26.63 -0.15 -3.06 16 17 C 0.05 1.09 1.23 -131.82 -0.16 0.93 16 18 C -0.16 -3.18 9.39 -27.00 -0.25 -3.43 16 19 C -0.16 -3.19 9.85 -26.98 -0.27 -3.45 16 20 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 21 H 0.38 9.98 7.10 45.56 0.32 10.30 16 22 H 0.10 2.52 6.49 -51.93 -0.34 2.19 16 23 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.07 1.68 7.17 -51.93 -0.37 1.31 16 25 H 0.06 0.98 8.13 -51.93 -0.42 0.56 16 26 H 0.07 1.29 8.14 -51.92 -0.42 0.86 16 27 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.06 1.00 8.13 -51.93 -0.42 0.57 16 29 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 1.30 7.66 -51.93 -0.40 0.90 16 31 H 0.10 2.20 6.35 -51.93 -0.33 1.87 16 32 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 34 H 0.10 2.09 7.51 -51.93 -0.39 1.70 16 LS Contribution 257.27 15.07 3.88 3.88 Total: -1.00 -26.24 257.27 -8.11 -34.35 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -4.32 Total: 13.64 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: -1.61 Total: -17.97 kcal Atomic # 7 Polarization: -33.33 SS G_CDS: -0.63 Total: -33.97 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.40 Total: -15.35 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -26.24 -8.11 -34.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716060427.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.507 kcal (2) G-P(sol) polarization free energy of solvation -26.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds