Wall clock time and date at job start Mon Mar 30 2020 03:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42900 * 110.05861 * 58.20675 * 9 7 2 11 11 C 1.53986 * 110.07918 * 296.57704 * 9 7 2 12 12 C 1.53281 * 108.42249 * 299.81012 * 11 9 7 13 13 C 1.52916 * 109.88019 * 299.24311 * 12 11 9 14 14 N 1.47314 * 109.78070 * 1.09744 * 13 12 11 15 15 C 1.47327 * 109.95079 * 297.92558 * 14 13 12 16 16 C 1.52926 * 109.74977 * 62.24631 * 15 14 13 17 17 C 1.47308 * 109.71757 * 58.60276 * 14 13 12 18 18 C 1.52342 * 118.49426 * 85.07117 * 17 14 13 19 19 C 1.52388 * 118.39488 * 154.78198 * 17 14 13 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 0.96700 * 114.00129 * 299.99986 * 10 9 7 22 22 H 1.09003 * 110.20983 * 60.50864 * 11 9 7 23 23 H 1.09000 * 109.40395 * 179.11655 * 12 11 9 24 24 H 1.09002 * 109.40473 * 59.36939 * 12 11 9 25 25 H 1.09000 * 109.42277 * 241.00155 * 13 12 11 26 26 H 1.09009 * 109.41713 * 121.19224 * 13 12 11 27 27 H 1.09001 * 109.42348 * 182.32175 * 15 14 13 28 28 H 1.08994 * 109.43225 * 302.15970 * 15 14 13 29 29 H 1.08996 * 109.39470 * 238.46969 * 16 15 14 30 30 H 1.08999 * 109.39692 * 118.73484 * 16 15 14 31 31 H 1.08998 * 117.51300 * 215.72218 * 18 17 14 32 32 H 1.08998 * 117.51360 * 0.82610 * 18 17 14 33 33 H 1.08992 * 117.51659 * 359.00605 * 19 17 14 34 34 H 1.09000 * 117.51369 * 144.13164 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 0.3983 -2.5677 -1.1501 11 6 0.4207 -2.6361 1.2843 12 6 1.3767 -2.6015 2.4819 13 6 2.3631 -3.7667 2.3936 14 7 2.1055 -4.5464 1.1706 15 6 0.7493 -5.1203 1.2166 16 6 -0.2862 -3.9960 1.2644 17 6 2.2352 -3.6757 -0.0105 18 6 3.6209 -3.4594 -0.6053 19 6 2.5906 -4.3157 -1.3471 20 1 -0.4850 0.8401 -0.0004 21 1 -0.2623 -1.8627 -1.1912 22 1 -0.3014 -1.8226 1.3554 23 1 0.8034 -2.6816 3.4054 24 1 1.9268 -1.6604 2.4791 25 1 2.2433 -4.4099 3.2654 26 1 3.3814 -3.3784 2.3681 27 1 0.5828 -5.7287 0.3277 28 1 0.6492 -5.7433 2.1053 29 1 -0.8937 -4.1014 2.1633 30 1 -0.9282 -4.0576 0.3858 31 1 3.8451 -2.4742 -1.0143 32 1 4.4575 -3.9745 -0.1332 33 1 2.7495 -5.3938 -1.3627 34 1 2.1371 -3.8936 -2.2439 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716060427.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:30 Heat of formation + Delta-G solvation = -33.787613 kcal Electronic energy + Delta-G solvation = -16995.002708 eV Core-core repulsion = 14506.591318 eV Total energy + Delta-G solvation = -2488.411391 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.69923 -36.90521 -36.41185 -34.14097 -31.98107 -31.60076 -28.77817 -26.43368 -23.80824 -23.26238 -22.84819 -21.42646 -18.82303 -18.25875 -17.39437 -16.98285 -16.60811 -15.93295 -15.53748 -15.35137 -14.42611 -13.98811 -13.71375 -13.64903 -13.26641 -12.94930 -12.84571 -12.70631 -12.38744 -12.28375 -12.15592 -11.81553 -11.66649 -11.53530 -11.04669 -10.96318 -10.62142 -10.40840 -9.82189 -9.15518 -8.12096 -6.27705 1.37426 1.41000 1.48524 2.38799 2.99093 3.10810 3.18744 3.93951 3.98889 4.16352 4.27441 4.39721 4.48072 4.48608 4.54012 4.64046 4.70297 4.88510 4.91080 4.95600 5.05333 5.15193 5.18110 5.22269 5.40908 5.50073 5.58279 5.67935 5.71950 5.94170 6.12565 6.24594 6.42360 6.76350 7.41102 7.52603 8.87575 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.031485 B = 0.013317 C = 0.012425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.095647 B = 2102.091636 C = 2252.940668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.029 3.971 3 Si 0.947 3.053 4 H -0.281 1.281 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.534 4.534 8 H 0.059 0.941 9 C 0.263 3.737 10 O -0.594 6.594 11 C -0.109 4.109 12 C -0.127 4.127 13 C 0.056 3.944 14 N -0.482 5.482 15 C 0.055 3.945 16 C -0.139 4.139 17 C 0.034 3.966 18 C -0.149 4.149 19 C -0.148 4.148 20 H 0.265 0.735 21 H 0.371 0.629 22 H 0.064 0.936 23 H 0.056 0.944 24 H 0.047 0.953 25 H 0.091 0.909 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.093 0.907 29 H 0.061 0.939 30 H 0.044 0.956 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.493 -6.537 3.545 7.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.170 4.170 3 Si 0.774 3.226 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.573 4.573 8 H 0.077 0.923 9 C 0.223 3.777 10 O -0.402 6.402 11 C -0.129 4.129 12 C -0.166 4.166 13 C -0.073 4.073 14 N -0.203 5.203 15 C -0.074 4.074 16 C -0.178 4.178 17 C -0.057 4.057 18 C -0.186 4.186 19 C -0.186 4.186 20 H 0.074 0.926 21 H 0.220 0.780 22 H 0.082 0.918 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.110 0.890 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.111 0.889 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.105 -7.394 3.405 8.712 hybrid contribution -0.912 2.569 0.041 2.727 sum 2.193 -4.824 3.445 6.321 Atomic orbital electron populations 1.69692 1.06725 1.27559 1.51757 1.25598 0.95615 1.01762 0.94024 0.85720 0.78932 0.80005 0.77948 1.20654 1.21104 1.19478 1.21970 0.93631 0.91705 1.49962 0.92272 1.18743 0.86095 0.90787 0.82111 1.86091 1.50911 1.55093 1.48114 1.21732 0.98192 0.95876 0.97146 1.21903 0.97949 0.99622 0.97152 1.22215 0.98644 0.93796 0.92596 1.63862 1.25708 1.29562 1.01153 1.22228 0.86829 0.95825 1.02484 1.22012 0.98847 0.96265 1.00691 1.21582 0.97485 0.95312 0.91289 1.22877 0.92017 1.00658 1.03090 1.22682 1.02602 0.98595 0.94701 0.92579 0.77971 0.91809 0.92565 0.93381 0.89038 0.91486 0.91467 0.88914 0.92036 0.93741 0.89652 0.87854 0.88001 0.90268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.05 9.93 21.45 0.21 -48.84 16 2 C 0.03 1.52 5.26 84.66 0.44 1.97 16 3 Si 0.95 42.37 29.54 68.60 2.03 44.39 16 4 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 5 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.53 -27.87 6.43 25.60 0.16 -27.71 16 8 H 0.06 3.10 5.80 -2.91 -0.02 3.08 16 9 C 0.26 12.73 0.51 -11.07 -0.01 12.72 16 10 O -0.59 -30.99 11.28 -148.98 -1.68 -32.67 16 11 C -0.11 -4.97 2.58 -10.27 -0.03 -4.99 16 12 C -0.13 -5.13 5.43 30.66 0.17 -4.96 16 13 C 0.06 1.95 6.04 86.20 0.52 2.47 16 14 N -0.48 -17.78 5.42 -845.44 -4.58 -22.36 16 15 C 0.05 1.87 6.04 86.20 0.52 2.39 16 16 C -0.14 -5.40 5.53 30.66 0.17 -5.23 16 17 C 0.03 1.42 1.23 3.16 0.00 1.42 16 18 C -0.15 -5.84 9.39 30.42 0.29 -5.56 16 19 C -0.15 -5.80 9.85 30.44 0.30 -5.50 16 20 H 0.26 13.67 8.31 -92.70 -0.77 12.90 16 21 H 0.37 20.22 7.10 -74.06 -0.53 19.69 16 22 H 0.06 3.32 6.49 -2.39 -0.02 3.31 16 23 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.05 2.16 7.17 -2.39 -0.02 2.14 16 25 H 0.09 2.63 8.13 -2.39 -0.02 2.61 16 26 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 27 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.09 2.61 8.13 -2.39 -0.02 2.59 16 29 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.04 1.84 7.66 -2.39 -0.02 1.83 16 31 H 0.09 3.63 6.35 -2.39 -0.02 3.62 16 32 H 0.10 3.55 8.14 -2.39 -0.02 3.53 16 33 H 0.10 3.49 8.14 -2.39 -0.02 3.47 16 34 H 0.08 3.37 7.51 -2.39 -0.02 3.36 16 Total: -1.00 -55.55 257.27 -0.91 -56.46 By element: Atomic # 1 Polarization: 35.42 SS G_CDS: 0.57 Total: 35.99 kcal Atomic # 6 Polarization: -35.52 SS G_CDS: 2.54 Total: -32.98 kcal Atomic # 7 Polarization: -66.83 SS G_CDS: -4.37 Total: -71.20 kcal Atomic # 8 Polarization: -30.99 SS G_CDS: -1.68 Total: -32.67 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal Total: -55.55 -0.91 -56.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716060427.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.672 kcal (2) G-P(sol) polarization free energy of solvation -55.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds