Wall clock time and date at job start Mon Mar 30 2020 02:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99845 * 2 1 4 4 H 1.48509 * 109.47319 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.47389 * 119.99762 * 3 2 1 6 6 H 1.48498 * 109.47130 * 240.00073 * 3 2 1 7 7 C 1.38804 * 120.00285 * 180.27189 * 2 1 3 8 8 H 1.07992 * 120.00300 * 201.49439 * 7 2 1 9 9 N 1.36945 * 119.99718 * 21.49249 * 7 2 1 10 10 C 1.46498 * 119.99853 * 35.59223 * 9 7 2 11 11 C 1.53003 * 109.47219 * 89.99864 * 10 9 7 12 12 C 1.55595 * 118.86924 * 82.72777 * 11 10 9 13 13 C 1.56043 * 80.84072 * 161.67785 * 12 11 10 14 14 C 1.54828 * 119.62372 * 179.97438 * 11 10 9 15 15 C 1.56794 * 105.80722 * 57.20239 * 13 12 11 16 16 O 1.46001 * 117.29973 * 307.28781 * 11 10 9 17 17 C 1.46496 * 120.00094 * 215.59145 * 9 7 2 18 18 C 1.53007 * 117.49907 * 10.94084 * 17 9 7 19 19 C 1.53000 * 59.99969 * 252.50971 * 18 17 9 20 20 H 0.97002 * 119.99657 * 357.96630 * 1 2 3 21 21 H 1.09004 * 109.46965 * 210.00107 * 10 9 7 22 22 H 1.09005 * 109.47381 * 329.99702 * 10 9 7 23 23 H 1.08994 * 114.63121 * 274.66621 * 12 11 10 24 24 H 1.09000 * 114.63212 * 48.69586 * 12 11 10 25 25 H 1.08995 * 121.16976 * 196.22242 * 13 12 11 26 26 H 1.08995 * 114.55595 * 311.99169 * 14 11 10 27 27 H 1.08995 * 114.55232 * 85.77753 * 14 11 10 28 28 H 1.09001 * 111.44760 * 76.40807 * 15 13 12 29 29 H 1.08998 * 111.44754 * 201.34515 * 15 13 12 30 30 H 1.08999 * 115.54951 * 156.65165 * 17 9 7 31 31 H 1.09004 * 117.49774 * 0.02562 * 18 17 9 32 32 H 1.08998 * 117.49760 * 145.02028 * 18 17 9 33 33 H 1.09000 * 117.50377 * 252.51055 * 19 18 17 34 34 H 1.09006 * 117.49861 * 107.48765 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7466 0.0006 5 1 3.1039 1.6965 1.2126 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2020 -0.0057 8 1 3.0339 -1.2362 0.3368 9 7 1.3970 -2.3447 -0.4457 10 6 0.4408 -2.2826 -1.5538 11 6 1.1819 -2.4760 -2.8784 12 6 1.5051 -3.9217 -3.3543 13 6 1.6715 -3.1704 -4.7117 14 6 0.3903 -2.4527 -4.2088 15 6 2.7585 -2.0688 -4.4597 16 8 2.3298 -1.6113 -3.1359 17 6 1.6971 -3.6291 0.1918 18 6 2.4967 -3.6008 1.4960 19 6 3.1567 -4.0876 0.2044 20 1 -0.4850 0.8396 0.0298 21 1 -0.3038 -3.0699 -1.4358 22 1 -0.0541 -1.3114 -1.5528 23 1 2.4275 -4.3377 -2.9492 24 1 0.6619 -4.6114 -3.3172 25 1 1.6833 -3.7110 -5.6580 26 1 -0.5068 -3.0718 -4.2130 27 1 0.2352 -1.4579 -4.6261 28 1 3.7609 -2.4964 -4.4346 29 1 2.6898 -1.2659 -5.1936 30 1 0.9295 -4.3960 0.0882 31 1 2.7991 -2.6264 1.8799 32 1 2.2551 -4.3491 2.2508 33 1 3.3494 -5.1563 0.1094 34 1 3.8937 -3.4336 -0.2617 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716104228.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:42 Heat of formation + Delta-G solvation = 52.469270 kcal Electronic energy + Delta-G solvation = -16276.119203 eV Core-core repulsion = 13791.448192 eV Total energy + Delta-G solvation = -2484.671011 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.08715 -38.58451 -35.27108 -34.28840 -32.58877 -29.56069 -27.07726 -26.12745 -25.17855 -22.92331 -21.85533 -21.30648 -20.80286 -18.30551 -17.32364 -16.99245 -16.25627 -15.98055 -15.75562 -15.59195 -14.67901 -14.16767 -13.58359 -13.48030 -13.06734 -12.95464 -12.74374 -12.69183 -12.67184 -12.30294 -12.18013 -12.08866 -11.89555 -11.37490 -11.24048 -11.08464 -10.87167 -10.38758 -10.04284 -8.42197 -7.77603 -5.36091 1.40230 1.44999 1.52183 2.49951 2.97972 3.20819 3.34460 3.41708 3.50759 3.56862 3.95159 3.95539 4.32353 4.34707 4.51930 4.61338 4.64226 4.71665 4.82532 4.85603 4.88602 4.93815 4.96396 5.06694 5.17309 5.23644 5.26997 5.39224 5.56907 5.66908 5.76752 5.97370 6.51051 7.20375 7.91728 8.38420 9.16015 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.021763 B = 0.013730 C = 0.010286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.265040 B = 2038.839478 C = 2721.514041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.032 4.032 3 Si 0.946 3.054 4 H -0.289 1.289 5 H -0.276 1.276 6 H -0.290 1.290 7 C -0.235 4.235 8 H 0.042 0.958 9 N -0.557 5.557 10 C 0.176 3.824 11 C 0.048 3.952 12 C -0.141 4.141 13 C -0.136 4.136 14 C -0.168 4.168 15 C 0.031 3.969 16 O -0.379 6.379 17 C 0.108 3.892 18 C -0.196 4.196 19 C -0.204 4.204 20 H 0.251 0.749 21 H 0.059 0.941 22 H 0.071 0.929 23 H 0.057 0.943 24 H 0.119 0.881 25 H 0.144 0.856 26 H 0.113 0.887 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.109 0.891 31 H 0.067 0.933 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.399 -9.043 -8.019 12.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.228 4.228 3 Si 0.776 3.224 4 H -0.215 1.215 5 H -0.202 1.202 6 H -0.217 1.217 7 C -0.366 4.366 8 H 0.060 0.940 9 N -0.273 5.273 10 C 0.050 3.950 11 C 0.007 3.993 12 C -0.178 4.178 13 C -0.154 4.154 14 C -0.206 4.206 15 C -0.045 4.045 16 O -0.299 6.299 17 C 0.000 4.000 18 C -0.235 4.235 19 C -0.245 4.245 20 H 0.060 0.940 21 H 0.078 0.922 22 H 0.089 0.911 23 H 0.076 0.924 24 H 0.137 0.863 25 H 0.162 0.838 26 H 0.131 0.869 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.127 0.873 31 H 0.086 0.914 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.346 -8.680 -7.874 11.797 hybrid contribution 0.593 1.259 -0.004 1.392 sum 1.939 -7.421 -7.879 10.996 Atomic orbital electron populations 1.70002 1.06309 1.25799 1.54194 1.25542 0.95642 1.00724 1.00889 0.85666 0.78201 0.80737 0.77831 1.21474 1.20232 1.21729 1.18778 0.93424 0.86675 1.37679 0.94040 1.43322 1.48727 1.01885 1.33352 1.20501 0.90084 1.02112 0.82302 1.25078 0.87503 0.90776 0.95976 1.24347 1.02354 0.95725 0.95377 1.24834 0.94305 0.96922 0.99336 1.24516 0.98176 1.00633 0.97300 1.24243 0.98149 0.96357 0.85779 1.90081 1.47894 1.57325 1.34597 1.21372 0.92259 0.89640 0.96746 1.23069 1.06923 1.01647 0.91821 1.23257 0.99196 1.00191 1.01842 0.94003 0.92236 0.91146 0.92403 0.86332 0.83832 0.86894 0.92787 0.90490 0.90182 0.87331 0.91389 0.87679 0.87560 0.92338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.58 11.33 21.65 0.25 -54.34 16 2 C -0.03 -1.83 4.97 84.86 0.42 -1.40 16 3 Si 0.95 47.75 29.61 68.60 2.03 49.78 16 4 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 5 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 6 H -0.29 -14.96 7.11 99.48 0.71 -14.25 16 7 C -0.23 -13.35 7.98 84.03 0.67 -12.68 16 8 H 0.04 2.45 7.15 -2.91 -0.02 2.43 16 9 N -0.56 -28.01 2.77 -678.02 -1.88 -29.89 16 10 C 0.18 8.27 5.63 86.38 0.49 8.76 16 11 C 0.05 1.93 2.20 -14.76 -0.03 1.90 16 12 C -0.14 -4.27 7.73 28.39 0.22 -4.05 16 13 C -0.14 -3.66 6.47 -13.13 -0.08 -3.74 16 14 C -0.17 -5.27 7.39 27.82 0.21 -5.06 16 15 C 0.03 1.02 7.94 73.31 0.58 1.60 16 16 O -0.38 -17.51 11.68 -148.98 -1.74 -19.25 16 17 C 0.11 4.55 6.60 45.00 0.30 4.85 16 18 C -0.20 -7.79 9.78 30.60 0.30 -7.49 16 19 C -0.20 -7.71 10.18 30.60 0.31 -7.40 16 20 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 21 H 0.06 2.50 8.05 -2.38 -0.02 2.48 16 22 H 0.07 3.90 5.37 -2.38 -0.01 3.89 16 23 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.12 2.96 7.83 -2.39 -0.02 2.94 16 25 H 0.14 2.77 8.14 -2.39 -0.02 2.75 16 26 H 0.11 2.94 7.83 -2.39 -0.02 2.92 16 27 H 0.05 1.81 8.11 -2.39 -0.02 1.79 16 28 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.11 4.01 8.11 -2.39 -0.02 3.99 16 31 H 0.07 3.12 6.78 -2.38 -0.02 3.11 16 32 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 33 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 34 H 0.06 2.52 8.14 -2.38 -0.02 2.50 16 Total: -1.00 -66.37 278.10 3.10 -63.26 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 1.07 Total: 15.15 kcal Atomic # 6 Polarization: -28.10 SS G_CDS: 3.38 Total: -24.72 kcal Atomic # 7 Polarization: -82.60 SS G_CDS: -1.63 Total: -84.23 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -1.74 Total: -19.25 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.78 kcal Total: -66.37 3.10 -63.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716104228.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.734 kcal (2) G-P(sol) polarization free energy of solvation -66.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds