Wall clock time and date at job start Mon Mar 30 2020 03:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86800 * 120.00182 * 2 1 4 4 H 1.48502 * 109.47126 * 270.00216 * 3 2 1 5 5 H 1.48507 * 109.47103 * 29.99995 * 3 2 1 6 6 H 1.48499 * 109.47673 * 149.99779 * 3 2 1 7 7 C 1.40047 * 120.00389 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00541 * 179.97438 * 7 2 1 9 9 C 1.46376 * 119.99858 * 359.97438 * 7 2 1 10 10 O 1.21692 * 119.99740 * 0.02562 * 9 7 2 11 11 N 1.34770 * 120.00465 * 179.97438 * 9 7 2 12 12 C 1.46506 * 120.00536 * 179.97438 * 11 9 7 13 13 C 1.52997 * 109.47115 * 180.02562 * 12 11 9 14 14 C 1.53006 * 109.46646 * 180.02562 * 13 12 11 15 15 H 1.09000 * 110.43417 * 52.46009 * 14 13 12 16 16 C 1.54880 * 110.48787 * 289.77444 * 14 13 12 17 17 C 1.54332 * 103.01093 * 203.81815 * 16 14 13 18 18 C 1.54266 * 104.46217 * 37.20484 * 17 16 14 19 19 H 1.08997 * 117.41125 * 117.16940 * 18 17 16 20 20 C 1.52993 * 118.68454 * 272.97848 * 18 17 16 21 21 C 1.53002 * 60.37892 * 93.34801 * 20 18 17 22 22 H 1.09004 * 119.75580 * 111.12343 * 21 20 18 23 23 H 0.96998 * 119.99500 * 359.97438 * 1 2 3 24 24 H 0.97010 * 119.99812 * 0.02562 * 11 9 7 25 25 H 1.09004 * 109.46296 * 60.00237 * 12 11 9 26 26 H 1.08990 * 109.46836 * 300.00492 * 12 11 9 27 27 H 1.08995 * 109.47505 * 60.00590 * 13 12 11 28 28 H 1.09000 * 109.47175 * 300.00107 * 13 12 11 29 29 H 1.09003 * 110.75654 * 321.69692 * 16 14 13 30 30 H 1.09008 * 110.75583 * 85.06704 * 16 14 13 31 31 H 1.08993 * 109.67573 * 278.77061 * 17 16 14 32 32 H 1.09002 * 111.14886 * 156.37232 * 17 16 14 33 33 H 1.08999 * 117.46406 * 345.75321 * 20 18 17 34 34 H 1.09004 * 117.46039 * 200.94491 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4382 2.6527 0.7001 6 1 3.5383 1.4403 0.7001 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2752 -2.4805 0.0017 10 8 0.0583 -2.4805 0.0017 11 7 1.9490 -3.6476 0.0017 12 6 1.2165 -4.9165 0.0034 13 6 2.2108 -6.0793 0.0036 14 6 1.4458 -7.4044 0.0048 15 1 0.7162 -7.4232 -0.8048 16 6 0.7502 -7.6276 1.3705 17 6 0.5857 -9.1609 1.4301 18 6 1.8707 -9.7119 0.7783 19 1 2.5306 -10.3152 1.4016 20 6 1.9048 -9.8913 -0.7407 21 6 2.4225 -8.5918 -0.1209 22 1 3.4880 -8.3639 -0.1531 23 1 -0.4849 0.8401 0.0004 24 1 2.9191 -3.6476 0.0013 25 1 0.5889 -4.9747 -0.8859 26 1 0.5909 -4.9735 0.8940 27 1 2.8381 -6.0209 0.8931 28 1 2.8368 -6.0223 -0.8869 29 1 1.3844 -7.2840 2.1877 30 1 -0.2189 -7.1293 1.3964 31 1 -0.2914 -9.4585 0.8556 32 1 0.5015 -9.5077 2.4601 33 1 0.9546 -9.8505 -1.2732 34 1 2.6425 -10.5823 -1.1489 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717108244.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:03 Heat of formation + Delta-G solvation = -35.854705 kcal Electronic energy + Delta-G solvation = -14809.026982 eV Core-core repulsion = 12320.525955 eV Total energy + Delta-G solvation = -2488.501026 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.68241 -37.23265 -34.34321 -32.47021 -31.70619 -30.23427 -27.01502 -25.30989 -23.10240 -21.51993 -20.22677 -19.83521 -19.24016 -17.10894 -15.84753 -15.27709 -15.12930 -14.50063 -14.10808 -13.89697 -13.24429 -12.95484 -12.74331 -12.33337 -12.01681 -11.60910 -11.24320 -11.17473 -11.02672 -10.83028 -10.81495 -10.54842 -10.38539 -10.25318 -10.19199 -10.05602 -9.63731 -8.81440 -7.56100 -7.42160 -6.14343 -4.59711 3.16547 3.23056 3.26681 3.57880 4.13468 4.36936 4.63745 4.64643 4.73523 5.03700 5.13658 5.19779 5.36854 5.40040 5.48994 5.54334 5.69482 5.76644 5.83623 5.87461 5.96439 6.03244 6.08012 6.15280 6.20898 6.25773 6.47132 6.70606 6.71414 7.47156 7.99280 8.17556 8.38273 9.06567 9.60559 10.65021 10.84118 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.072883 B = 0.004638 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.086532 B = 6035.253725 C = 6215.958771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.067 0.933 9 C 0.553 3.447 10 O -0.582 6.582 11 N -0.769 5.769 12 C 0.133 3.867 13 C -0.118 4.118 14 C -0.059 4.059 15 H 0.076 0.924 16 C -0.120 4.120 17 C -0.096 4.096 18 C -0.171 4.171 19 H 0.105 0.895 20 C -0.156 4.156 21 C -0.158 4.158 22 H 0.109 0.891 23 H 0.268 0.732 24 H 0.379 0.621 25 H 0.045 0.955 26 H 0.047 0.953 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.134 -15.659 0.911 16.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.085 0.915 9 C 0.357 3.643 10 O -0.465 6.465 11 N -0.425 5.425 12 C 0.008 3.992 13 C -0.156 4.156 14 C -0.078 4.078 15 H 0.094 0.906 16 C -0.157 4.157 17 C -0.133 4.133 18 C -0.189 4.189 19 H 0.123 0.877 20 C -0.193 4.193 21 C -0.176 4.176 22 H 0.127 0.873 23 H 0.078 0.922 24 H 0.210 0.790 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.109 0.891 34 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.032 -15.545 0.928 16.086 hybrid contribution 1.033 0.726 -0.013 1.262 sum 5.065 -14.819 0.915 15.687 Atomic orbital electron populations 1.70028 1.07063 1.27163 1.35569 1.25708 0.94602 1.00262 0.92637 0.86384 0.80145 0.81464 0.78794 1.19768 1.20479 1.18940 1.20904 0.93561 0.89504 1.54420 0.91482 1.18222 0.87216 0.82542 0.76311 1.90592 1.14130 1.86967 1.54861 1.46135 1.08503 1.05109 1.82726 1.20873 0.94083 0.83751 1.00470 1.21778 0.98393 0.93386 1.02046 1.21523 0.95992 0.92551 0.97690 0.90553 1.22685 1.00996 0.94899 0.97129 1.21850 0.95831 0.95494 1.00148 1.23232 1.00067 1.03245 0.92349 0.87727 1.23034 1.02660 0.99022 0.94552 1.23317 0.99497 0.89442 1.05335 0.87342 0.92171 0.78984 0.93689 0.93459 0.91736 0.91755 0.91200 0.90897 0.91768 0.91379 0.89084 0.88745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.55 11.83 55.55 0.66 -22.89 16 2 C 0.09 2.49 5.50 -17.37 -0.10 2.39 16 3 Si 0.91 20.43 29.56 -169.99 -5.02 15.40 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.55 -15.81 9.54 -35.63 -0.34 -16.15 16 8 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 9 C 0.55 16.25 7.75 -12.99 -0.10 16.15 16 10 O -0.58 -19.44 15.02 5.20 0.08 -19.37 16 11 N -0.77 -17.78 5.55 -61.72 -0.34 -18.12 16 12 C 0.13 2.62 5.55 -4.04 -0.02 2.60 16 13 C -0.12 -1.71 4.80 -26.73 -0.13 -1.84 16 14 C -0.06 -0.74 2.66 -88.96 -0.24 -0.98 16 15 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 16 C -0.12 -1.46 5.64 -25.04 -0.14 -1.60 16 17 C -0.10 -0.99 6.61 -25.37 -0.17 -1.16 16 18 C -0.17 -1.73 6.93 -89.51 -0.62 -2.35 16 19 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 20 C -0.16 -1.51 10.09 -26.73 -0.27 -1.78 16 21 C -0.16 -1.74 6.36 -89.50 -0.57 -2.31 16 22 H 0.11 1.15 8.05 -51.93 -0.42 0.73 16 23 H 0.27 7.41 8.29 -40.82 -0.34 7.07 16 24 H 0.38 7.65 8.45 -40.82 -0.35 7.31 16 25 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.05 0.99 7.55 -51.93 -0.39 0.59 16 27 H 0.06 0.90 8.02 -51.93 -0.42 0.48 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.07 0.87 7.97 -51.93 -0.41 0.45 16 30 H 0.07 0.94 8.06 -51.92 -0.42 0.52 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 284.09 15.07 4.28 4.28 Total: -1.00 -34.13 284.09 -8.37 -42.51 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -5.33 Total: 5.20 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -2.69 Total: -7.01 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: 0.31 Total: -41.01 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: 0.08 Total: -19.37 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -34.13 -8.37 -42.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717108244.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.654 kcal (2) G-P(sol) polarization free energy of solvation -34.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds