Wall clock time and date at job start Mon Mar 30 2020 03:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86800 * 120.00182 * 2 1 4 4 H 1.48502 * 109.47126 * 270.00216 * 3 2 1 5 5 H 1.48507 * 109.47103 * 29.99995 * 3 2 1 6 6 H 1.48499 * 109.47673 * 149.99779 * 3 2 1 7 7 C 1.40047 * 120.00389 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00541 * 179.97438 * 7 2 1 9 9 C 1.46376 * 119.99858 * 359.97438 * 7 2 1 10 10 O 1.21692 * 119.99740 * 0.02562 * 9 7 2 11 11 N 1.34770 * 120.00465 * 179.97438 * 9 7 2 12 12 C 1.46506 * 120.00536 * 179.97438 * 11 9 7 13 13 C 1.52997 * 109.47115 * 180.02562 * 12 11 9 14 14 C 1.53006 * 109.46646 * 180.02562 * 13 12 11 15 15 H 1.09000 * 110.43417 * 52.46009 * 14 13 12 16 16 C 1.54880 * 110.48787 * 289.77444 * 14 13 12 17 17 C 1.54332 * 103.01093 * 203.81815 * 16 14 13 18 18 C 1.54266 * 104.46217 * 37.20484 * 17 16 14 19 19 H 1.08997 * 117.41125 * 117.16940 * 18 17 16 20 20 C 1.52993 * 118.68454 * 272.97848 * 18 17 16 21 21 C 1.53002 * 60.37892 * 93.34801 * 20 18 17 22 22 H 1.09004 * 119.75580 * 111.12343 * 21 20 18 23 23 H 0.96998 * 119.99500 * 359.97438 * 1 2 3 24 24 H 0.97010 * 119.99812 * 0.02562 * 11 9 7 25 25 H 1.09004 * 109.46296 * 60.00237 * 12 11 9 26 26 H 1.08990 * 109.46836 * 300.00492 * 12 11 9 27 27 H 1.08995 * 109.47505 * 60.00590 * 13 12 11 28 28 H 1.09000 * 109.47175 * 300.00107 * 13 12 11 29 29 H 1.09003 * 110.75654 * 321.69692 * 16 14 13 30 30 H 1.09008 * 110.75583 * 85.06704 * 16 14 13 31 31 H 1.08993 * 109.67573 * 278.77061 * 17 16 14 32 32 H 1.09002 * 111.14886 * 156.37232 * 17 16 14 33 33 H 1.08999 * 117.46406 * 345.75321 * 20 18 17 34 34 H 1.09004 * 117.46039 * 200.94491 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4382 2.6527 0.7001 6 1 3.5383 1.4403 0.7001 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2752 -2.4805 0.0017 10 8 0.0583 -2.4805 0.0017 11 7 1.9490 -3.6476 0.0017 12 6 1.2165 -4.9165 0.0034 13 6 2.2108 -6.0793 0.0036 14 6 1.4458 -7.4044 0.0048 15 1 0.7162 -7.4232 -0.8048 16 6 0.7502 -7.6276 1.3705 17 6 0.5857 -9.1609 1.4301 18 6 1.8707 -9.7119 0.7783 19 1 2.5306 -10.3152 1.4016 20 6 1.9048 -9.8913 -0.7407 21 6 2.4225 -8.5918 -0.1209 22 1 3.4880 -8.3639 -0.1531 23 1 -0.4849 0.8401 0.0004 24 1 2.9191 -3.6476 0.0013 25 1 0.5889 -4.9747 -0.8859 26 1 0.5909 -4.9735 0.8940 27 1 2.8381 -6.0209 0.8931 28 1 2.8368 -6.0223 -0.8869 29 1 1.3844 -7.2840 2.1877 30 1 -0.2189 -7.1293 1.3964 31 1 -0.2914 -9.4585 0.8556 32 1 0.5015 -9.5077 2.4601 33 1 0.9546 -9.8505 -1.2732 34 1 2.6425 -10.5823 -1.1489 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717108244.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:03 Heat of formation + Delta-G solvation = -58.555096 kcal Electronic energy + Delta-G solvation = -14810.011345 eV Core-core repulsion = 12320.525955 eV Total energy + Delta-G solvation = -2489.485389 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.61462 -39.33153 -36.02530 -34.58683 -33.20685 -31.39300 -28.87937 -26.94503 -24.15269 -22.76181 -21.73476 -21.17579 -20.32669 -19.16221 -17.46580 -16.75879 -16.35264 -16.11742 -15.81534 -15.54625 -14.48651 -14.37317 -14.00491 -13.78239 -13.54720 -13.07973 -12.89735 -12.76308 -12.62702 -12.37043 -12.03246 -12.00155 -11.84429 -11.60642 -11.38869 -10.93544 -10.92558 -10.48271 -9.87853 -9.48172 -8.29434 -6.86530 1.40485 1.42440 1.57922 2.25281 2.46765 2.76769 3.09638 3.55647 3.61308 3.82588 3.85614 4.16258 4.21944 4.31438 4.38291 4.55908 4.65411 4.65809 4.68242 4.84353 4.85474 4.94863 5.10118 5.15577 5.17828 5.28161 5.31492 5.35115 5.40268 5.54442 5.87535 6.24464 6.27982 6.86050 7.55876 8.48841 8.67162 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.072883 B = 0.004638 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.086532 B = 6035.253725 C = 6215.958771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.027 3.973 3 Si 1.001 2.999 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.248 1.248 7 C -0.575 4.575 8 H 0.089 0.911 9 C 0.533 3.467 10 O -0.636 6.636 11 N -0.757 5.757 12 C 0.136 3.864 13 C -0.101 4.101 14 C -0.058 4.058 15 H 0.066 0.934 16 C -0.124 4.124 17 C -0.094 4.094 18 C -0.167 4.167 19 H 0.120 0.880 20 C -0.149 4.149 21 C -0.168 4.168 22 H 0.117 0.883 23 H 0.275 0.725 24 H 0.396 0.604 25 H 0.025 0.975 26 H 0.030 0.970 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.416 -16.109 0.971 17.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.188 4.188 3 Si 0.820 3.180 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.171 1.171 7 C -0.611 4.611 8 H 0.107 0.893 9 C 0.337 3.663 10 O -0.523 6.523 11 N -0.411 5.411 12 C 0.011 3.989 13 C -0.139 4.139 14 C -0.077 4.077 15 H 0.085 0.915 16 C -0.161 4.161 17 C -0.131 4.131 18 C -0.185 4.185 19 H 0.138 0.862 20 C -0.185 4.185 21 C -0.186 4.186 22 H 0.135 0.865 23 H 0.084 0.916 24 H 0.229 0.771 25 H 0.043 0.957 26 H 0.049 0.951 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.365 -16.051 0.987 17.295 hybrid contribution 0.285 0.806 -0.033 0.855 sum 6.650 -15.245 0.954 16.660 Atomic orbital electron populations 1.70201 1.09656 1.28976 1.36513 1.27030 0.95542 1.05111 0.91124 0.84974 0.78734 0.74813 0.79457 1.18546 1.19766 1.17103 1.21465 0.94807 0.90091 1.54777 0.89285 1.18694 0.86887 0.84582 0.76118 1.90544 1.16335 1.88107 1.57355 1.45840 1.09359 1.04888 1.81042 1.20974 0.95022 0.84211 0.98697 1.21646 0.97210 0.91918 1.03076 1.21467 0.96221 0.92416 0.97623 0.91515 1.22690 1.00078 0.96484 0.96868 1.21838 0.96339 0.93846 1.01116 1.23316 0.99655 1.02702 0.92804 0.86245 1.23135 1.02946 0.98141 0.94318 1.23239 0.99333 0.88984 1.07038 0.86533 0.91552 0.77054 0.95673 0.95147 0.90611 0.90633 0.91398 0.92523 0.91682 0.90152 0.89324 0.86884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.61 11.83 21.84 0.26 -51.35 16 2 C 0.03 1.52 5.50 85.30 0.47 1.99 16 3 Si 1.00 41.43 29.56 68.60 2.03 43.46 16 4 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 5 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 6 H -0.25 -9.47 7.11 99.48 0.71 -8.77 16 7 C -0.57 -33.37 9.54 24.83 0.24 -33.14 16 8 H 0.09 4.60 7.85 -2.91 -0.02 4.57 16 9 C 0.53 32.15 7.75 86.36 0.67 32.82 16 10 O -0.64 -44.32 15.02 -4.32 -0.06 -44.39 16 11 N -0.76 -35.40 5.55 -467.41 -2.59 -37.99 16 12 C 0.14 5.48 5.55 86.38 0.48 5.96 16 13 C -0.10 -2.83 4.80 30.60 0.15 -2.69 16 14 C -0.06 -1.43 2.66 -9.72 -0.03 -1.46 16 15 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 16 C -0.12 -2.99 5.64 31.69 0.18 -2.81 16 17 C -0.09 -1.82 6.61 31.48 0.21 -1.61 16 18 C -0.17 -2.95 6.93 -10.07 -0.07 -3.02 16 19 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 20 C -0.15 -2.50 10.09 30.59 0.31 -2.20 16 21 C -0.17 -3.33 6.36 -10.07 -0.06 -3.40 16 22 H 0.12 2.15 8.05 -2.38 -0.02 2.13 16 23 H 0.27 15.51 8.29 -92.71 -0.77 14.74 16 24 H 0.40 15.71 8.45 -92.70 -0.78 14.92 16 25 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.03 1.32 7.55 -2.39 -0.02 1.31 16 27 H 0.08 1.99 8.02 -2.39 -0.02 1.97 16 28 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.07 1.65 7.97 -2.39 -0.02 1.63 16 30 H 0.06 1.52 8.06 -2.38 -0.02 1.50 16 31 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 Total: -1.00 -75.87 284.09 2.46 -73.41 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: 0.30 Total: 26.41 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: 2.54 Total: -9.55 kcal Atomic # 7 Polarization: -87.01 SS G_CDS: -2.34 Total: -89.34 kcal Atomic # 8 Polarization: -44.32 SS G_CDS: -0.06 Total: -44.39 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -75.87 2.46 -73.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717108244.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.853 kcal (2) G-P(sol) polarization free energy of solvation -75.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds