Wall clock time and date at job start Mon Mar 30 2020 02:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 119.99705 * 2 1 4 4 H 1.48496 * 109.47223 * 239.99658 * 3 2 1 5 5 H 1.48500 * 109.47299 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46940 * 119.99982 * 3 2 1 7 7 C 1.37872 * 119.99784 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99548 * 173.16716 * 7 2 1 9 9 C 1.50697 * 120.00318 * 353.16391 * 7 2 1 10 10 C 1.52999 * 115.54962 * 84.81417 * 9 7 2 11 11 N 1.46903 * 109.47210 * 39.56080 * 10 9 7 12 12 C 1.46901 * 110.99931 * 174.71785 * 11 10 9 13 13 C 1.52992 * 119.80779 * 111.02495 * 12 11 10 14 14 C 1.53095 * 60.75941 * 113.30184 * 13 12 11 15 15 H 1.08998 * 120.35014 * 247.79086 * 14 13 12 16 16 C 1.54484 * 118.00307 * 90.22344 * 14 13 12 17 17 O 1.44427 * 104.89998 * 321.31819 * 16 14 13 18 18 C 1.44431 * 105.27264 * 319.43199 * 17 16 14 19 19 C 1.52999 * 117.51852 * 230.51731 * 9 7 2 20 20 C 1.52997 * 59.99969 * 107.48246 * 19 9 7 21 21 H 0.96995 * 119.99870 * 5.03409 * 1 2 3 22 22 H 1.09001 * 109.47425 * 279.55910 * 10 9 7 23 23 H 1.09008 * 109.47030 * 159.55844 * 10 9 7 24 24 H 1.00896 * 110.99906 * 298.67354 * 11 10 9 25 25 H 1.09004 * 117.43674 * 221.00406 * 13 12 11 26 26 H 1.09010 * 117.43336 * 5.70345 * 13 12 11 27 27 H 1.08996 * 110.37145 * 202.43383 * 16 14 13 28 28 H 1.08998 * 110.37139 * 80.20769 * 16 14 13 29 29 H 1.09002 * 110.36399 * 159.34349 * 18 17 16 30 30 H 1.08996 * 110.36963 * 281.67717 * 18 17 16 31 31 H 1.09005 * 117.49862 * 214.97163 * 19 9 7 32 32 H 1.09001 * 117.50400 * 359.97438 * 19 9 7 33 33 H 1.09002 * 117.49360 * 252.51034 * 20 19 9 34 34 H 1.09003 * 117.50134 * 107.49510 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0788 -1.1974 -0.1107 9 6 1.2591 -2.4944 0.1565 10 6 0.6833 -3.0836 -1.1328 11 7 1.6423 -2.8931 -2.2293 12 6 1.1787 -3.5566 -3.4552 13 6 0.7384 -2.7157 -4.6551 14 6 1.9980 -3.5785 -4.7684 15 1 2.9793 -3.1118 -4.8540 16 6 1.8410 -5.0275 -5.2804 17 8 0.6131 -5.5007 -4.6852 18 6 0.6259 -4.9939 -3.3328 19 6 1.7619 -3.4745 1.2182 20 6 0.4615 -2.7013 1.4455 21 1 -0.4850 0.8368 -0.0737 22 1 -0.2520 -2.5799 -1.3765 23 1 0.4970 -4.1487 -0.9940 24 1 1.8152 -1.9125 -2.3920 25 1 -0.1459 -3.0442 -5.2012 26 1 0.8753 -1.6363 -4.5892 27 1 2.6818 -5.6389 -4.9528 28 1 1.7649 -5.0396 -6.3677 29 1 -0.3844 -4.9783 -2.9240 30 1 1.2803 -5.6002 -2.7066 31 1 1.6826 -4.5392 0.9983 32 1 2.6324 -3.1792 1.8040 33 1 0.4763 -1.8970 2.1811 34 1 -0.4735 -3.2572 1.3752 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718061528.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:21 Heat of formation + Delta-G solvation = 13.484092 kcal Electronic energy + Delta-G solvation = -15623.892323 eV Core-core repulsion = 13137.530788 eV Total energy + Delta-G solvation = -2486.361536 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.09302 -36.83268 -34.81122 -32.00706 -31.88021 -28.00556 -25.66497 -25.53172 -24.27851 -21.03781 -20.45096 -19.26635 -19.01819 -16.38459 -16.01650 -15.60667 -14.96403 -14.62530 -14.52405 -13.81853 -13.28204 -12.84597 -12.53623 -12.46441 -11.88978 -11.81846 -11.22025 -11.15439 -10.98130 -10.92458 -10.51623 -10.42131 -10.09231 -9.80377 -9.61413 -9.27032 -8.82799 -8.44443 -8.09171 -7.30279 -6.05136 -4.10439 3.27583 3.33495 3.36487 3.82164 4.03557 4.37385 4.63570 4.85337 4.96674 5.19461 5.24174 5.35636 5.50517 5.63386 5.74459 5.82339 5.96776 6.00868 6.10654 6.14336 6.33229 6.39951 6.53476 6.71436 6.78660 6.87625 6.92566 7.12654 7.39488 7.50370 7.86076 7.98745 8.27352 8.49601 8.92676 9.54131 11.02622 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.030359 B = 0.008557 C = 0.007318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.069356 B = 3271.265638 C = 3825.106572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.069 3.931 3 Si 0.888 3.112 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.488 4.488 8 H 0.061 0.939 9 C 0.050 3.950 10 C 0.108 3.892 11 N -0.624 5.624 12 C 0.020 3.980 13 C -0.171 4.171 14 C -0.208 4.208 15 H 0.120 0.880 16 C 0.077 3.923 17 O -0.378 6.378 18 C 0.086 3.914 19 C -0.207 4.207 20 C -0.162 4.162 21 H 0.260 0.740 22 H 0.033 0.967 23 H 0.040 0.960 24 H 0.360 0.640 25 H 0.090 0.910 26 H 0.101 0.899 27 H 0.066 0.934 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.403 -6.330 -7.146 9.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.134 4.134 3 Si 0.716 3.284 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.526 4.526 8 H 0.079 0.921 9 C 0.049 3.951 10 C -0.020 4.020 11 N -0.255 5.255 12 C -0.074 4.074 13 C -0.211 4.211 14 C -0.227 4.227 15 H 0.138 0.862 16 C 0.000 4.000 17 O -0.296 6.296 18 C 0.009 3.991 19 C -0.245 4.245 20 C -0.200 4.200 21 H 0.070 0.930 22 H 0.051 0.949 23 H 0.058 0.942 24 H 0.182 0.818 25 H 0.109 0.891 26 H 0.119 0.881 27 H 0.084 0.916 28 H 0.107 0.893 29 H 0.110 0.890 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.476 -6.860 -6.940 9.869 hybrid contribution -0.039 1.809 -0.142 1.815 sum 1.437 -5.051 -7.082 8.817 Atomic orbital electron populations 1.69986 1.05815 1.26749 1.49145 1.25013 0.94792 0.98791 0.94846 0.86731 0.79650 0.83300 0.78755 1.20250 1.21452 1.20239 1.20370 0.93190 0.88551 1.50466 0.92072 1.18763 0.97184 0.93648 0.85502 1.21398 0.92779 0.96680 0.91146 1.60115 1.44097 1.19998 1.01334 1.23328 1.00888 0.95978 0.87174 1.23427 0.97039 0.97848 1.02750 1.24208 0.97792 0.97427 1.03309 0.86161 1.22820 0.87428 0.91471 0.98295 1.89112 1.40104 1.74650 1.25770 1.22763 1.01689 0.90549 0.84108 1.22999 0.98005 0.95613 1.07846 1.22535 0.92363 1.01337 1.03814 0.93029 0.94876 0.94159 0.81786 0.89147 0.88053 0.91596 0.89343 0.88959 0.90789 0.91842 0.90703 0.90214 0.92100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.11 12.95 55.43 0.72 -23.39 16 2 C 0.07 1.81 5.39 -17.82 -0.10 1.71 16 3 Si 0.89 20.58 29.55 -169.99 -5.02 15.56 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.49 -12.74 7.47 -34.44 -0.26 -13.00 16 8 H 0.06 1.63 7.82 -52.49 -0.41 1.22 16 9 C 0.05 1.19 1.75 -155.66 -0.27 0.92 16 10 C 0.11 2.37 5.54 -3.82 -0.02 2.35 16 11 N -0.62 -12.66 6.61 -98.22 -0.65 -13.30 16 12 C 0.02 0.35 3.27 -129.88 -0.43 -0.08 16 13 C -0.17 -2.70 9.69 -26.69 -0.26 -2.95 16 14 C -0.21 -3.07 7.28 -88.85 -0.65 -3.72 16 15 H 0.12 1.70 8.14 -51.93 -0.42 1.28 16 16 C 0.08 1.01 7.53 37.94 0.29 1.30 16 17 O -0.38 -5.90 11.31 -35.23 -0.40 -6.30 16 18 C 0.09 1.37 5.96 37.93 0.23 1.60 16 19 C -0.21 -4.55 9.88 -26.73 -0.26 -4.81 16 20 C -0.16 -3.79 9.49 -26.73 -0.25 -4.05 16 21 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 22 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.04 0.81 6.78 -51.92 -0.35 0.46 16 24 H 0.36 7.87 7.64 -39.29 -0.30 7.57 16 25 H 0.09 1.38 8.06 -51.93 -0.42 0.96 16 26 H 0.10 1.61 8.14 -51.92 -0.42 1.19 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.09 1.43 8.01 -51.93 -0.42 1.02 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.06 1.27 8.08 -51.93 -0.42 0.85 16 32 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 33 H 0.08 1.99 8.14 -51.93 -0.42 1.56 16 34 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 282.96 15.07 4.26 4.26 Total: -1.00 -27.04 282.96 -8.33 -35.36 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -5.26 Total: 8.54 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: -1.98 Total: -20.74 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.07 Total: -36.70 kcal Atomic # 8 Polarization: -5.90 SS G_CDS: -0.40 Total: -6.30 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -27.04 -8.33 -35.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718061528.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.849 kcal (2) G-P(sol) polarization free energy of solvation -27.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds