Wall clock time and date at job start Mon Mar 30 2020 02:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 119.99705 * 2 1 4 4 H 1.48496 * 109.47223 * 239.99658 * 3 2 1 5 5 H 1.48500 * 109.47299 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46940 * 119.99982 * 3 2 1 7 7 C 1.37872 * 119.99784 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99548 * 173.16716 * 7 2 1 9 9 C 1.50697 * 120.00318 * 353.16391 * 7 2 1 10 10 C 1.52999 * 115.54962 * 84.81417 * 9 7 2 11 11 N 1.46903 * 109.47210 * 39.56080 * 10 9 7 12 12 C 1.46901 * 110.99931 * 174.71785 * 11 10 9 13 13 C 1.52992 * 119.80779 * 111.02495 * 12 11 10 14 14 C 1.53095 * 60.75941 * 113.30184 * 13 12 11 15 15 H 1.08998 * 120.35014 * 247.79086 * 14 13 12 16 16 C 1.54484 * 118.00307 * 90.22344 * 14 13 12 17 17 O 1.44427 * 104.89998 * 321.31819 * 16 14 13 18 18 C 1.44431 * 105.27264 * 319.43199 * 17 16 14 19 19 C 1.52999 * 117.51852 * 230.51731 * 9 7 2 20 20 C 1.52997 * 59.99969 * 107.48246 * 19 9 7 21 21 H 0.96995 * 119.99870 * 5.03409 * 1 2 3 22 22 H 1.09001 * 109.47425 * 279.55910 * 10 9 7 23 23 H 1.09008 * 109.47030 * 159.55844 * 10 9 7 24 24 H 1.00896 * 110.99906 * 298.67354 * 11 10 9 25 25 H 1.09004 * 117.43674 * 221.00406 * 13 12 11 26 26 H 1.09010 * 117.43336 * 5.70345 * 13 12 11 27 27 H 1.08996 * 110.37145 * 202.43383 * 16 14 13 28 28 H 1.08998 * 110.37139 * 80.20769 * 16 14 13 29 29 H 1.09002 * 110.36399 * 159.34349 * 18 17 16 30 30 H 1.08996 * 110.36963 * 281.67717 * 18 17 16 31 31 H 1.09005 * 117.49862 * 214.97163 * 19 9 7 32 32 H 1.09001 * 117.50400 * 359.97438 * 19 9 7 33 33 H 1.09002 * 117.49360 * 252.51034 * 20 19 9 34 34 H 1.09003 * 117.50134 * 107.49510 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0788 -1.1974 -0.1107 9 6 1.2591 -2.4944 0.1565 10 6 0.6833 -3.0836 -1.1328 11 7 1.6423 -2.8931 -2.2293 12 6 1.1787 -3.5566 -3.4552 13 6 0.7384 -2.7157 -4.6551 14 6 1.9980 -3.5785 -4.7684 15 1 2.9793 -3.1118 -4.8540 16 6 1.8410 -5.0275 -5.2804 17 8 0.6131 -5.5007 -4.6852 18 6 0.6259 -4.9939 -3.3328 19 6 1.7619 -3.4745 1.2182 20 6 0.4615 -2.7013 1.4455 21 1 -0.4850 0.8368 -0.0737 22 1 -0.2520 -2.5799 -1.3765 23 1 0.4970 -4.1487 -0.9940 24 1 1.8152 -1.9125 -2.3920 25 1 -0.1459 -3.0442 -5.2012 26 1 0.8753 -1.6363 -4.5892 27 1 2.6818 -5.6389 -4.9528 28 1 1.7649 -5.0396 -6.3677 29 1 -0.3844 -4.9783 -2.9240 30 1 1.2803 -5.6002 -2.7066 31 1 1.6826 -4.5392 0.9983 32 1 2.6324 -3.1792 1.8040 33 1 0.4763 -1.8970 2.1811 34 1 -0.4735 -3.2572 1.3752 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718061528.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:20 Heat of formation + Delta-G solvation = -3.227407 kcal Electronic energy + Delta-G solvation = -15624.616988 eV Core-core repulsion = 13137.530788 eV Total energy + Delta-G solvation = -2487.086201 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.32432 -38.60822 -36.17188 -33.97806 -33.39728 -29.22073 -27.55506 -26.82921 -25.95656 -22.86192 -21.67147 -20.86009 -20.58899 -17.90188 -17.62986 -16.90040 -16.57723 -16.28146 -15.91314 -15.58595 -14.77183 -14.51428 -13.90033 -13.74309 -13.55347 -13.35622 -12.94295 -12.83815 -12.70777 -12.34486 -12.30880 -12.04297 -11.68267 -11.33568 -11.01854 -10.76649 -10.67569 -10.33460 -9.92140 -8.86044 -8.07014 -6.16766 1.42177 1.44797 1.50784 2.43587 2.55493 2.85409 3.19174 3.26163 3.57704 3.67462 3.72329 3.97641 4.21027 4.36828 4.49041 4.57455 4.63165 4.69228 4.74178 4.75989 4.82814 4.86736 4.95642 5.03658 5.11677 5.15097 5.28184 5.59143 5.65934 5.69755 5.80064 6.33519 6.52885 6.61798 6.90283 7.49983 8.99861 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.030359 B = 0.008557 C = 0.007318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.069356 B = 3271.265638 C = 3825.106572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.028 3.972 3 Si 0.943 3.057 4 H -0.269 1.269 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.493 4.493 8 H 0.051 0.949 9 C 0.023 3.977 10 C 0.124 3.876 11 N -0.627 5.627 12 C -0.011 4.011 13 C -0.171 4.171 14 C -0.186 4.186 15 H 0.129 0.871 16 C 0.075 3.925 17 O -0.387 6.387 18 C 0.091 3.909 19 C -0.186 4.186 20 C -0.168 4.168 21 H 0.258 0.742 22 H 0.003 0.997 23 H 0.057 0.943 24 H 0.347 0.653 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.082 0.918 28 H 0.115 0.885 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.301 -7.234 -8.179 11.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.172 4.172 3 Si 0.770 3.230 4 H -0.195 1.195 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.532 4.532 8 H 0.069 0.931 9 C 0.022 3.978 10 C -0.005 4.005 11 N -0.256 5.256 12 C -0.104 4.104 13 C -0.211 4.211 14 C -0.205 4.205 15 H 0.147 0.853 16 C -0.001 4.001 17 O -0.306 6.306 18 C 0.014 3.986 19 C -0.223 4.223 20 C -0.206 4.206 21 H 0.067 0.933 22 H 0.021 0.979 23 H 0.076 0.924 24 H 0.167 0.833 25 H 0.114 0.886 26 H 0.113 0.887 27 H 0.100 0.900 28 H 0.132 0.868 29 H 0.109 0.891 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.387 -7.783 -7.985 11.403 hybrid contribution -0.292 2.063 0.150 2.089 sum 2.095 -5.720 -7.835 9.925 Atomic orbital electron populations 1.70092 1.06929 1.27120 1.50326 1.25595 0.95408 1.01455 0.94773 0.85844 0.78476 0.79915 0.78759 1.19456 1.21554 1.20320 1.20535 0.92838 0.89853 1.49937 0.93052 1.18960 0.98066 0.93968 0.86773 1.21157 0.91580 0.96944 0.90816 1.60092 1.43921 1.19115 1.02505 1.23489 1.03447 0.96720 0.86760 1.23401 0.98147 0.97616 1.01948 1.24353 0.97537 0.98158 1.00439 0.85328 1.23062 0.87161 0.90184 0.99717 1.89108 1.41332 1.74670 1.25450 1.22683 1.01600 0.89705 0.84609 1.23002 0.96868 0.96550 1.05907 1.22450 0.93714 1.01370 1.03115 0.93325 0.97882 0.92441 0.83316 0.88613 0.88700 0.89971 0.86750 0.89147 0.90474 0.89285 0.90880 0.92539 0.90942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.41 12.95 21.45 0.28 -50.13 16 2 C 0.03 1.48 5.39 84.65 0.46 1.94 16 3 Si 0.94 42.45 29.55 68.60 2.03 44.47 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.49 -25.89 7.47 25.60 0.19 -25.70 16 8 H 0.05 2.74 7.82 -2.91 -0.02 2.71 16 9 C 0.02 1.10 1.75 -52.93 -0.09 1.01 16 10 C 0.12 5.39 5.54 86.30 0.48 5.86 16 11 N -0.63 -25.12 6.61 -464.67 -3.07 -28.19 16 12 C -0.01 -0.36 3.27 4.64 0.02 -0.35 16 13 C -0.17 -5.21 9.69 30.62 0.30 -4.92 16 14 C -0.19 -5.05 7.28 -9.64 -0.07 -5.12 16 15 H 0.13 3.30 8.14 -2.39 -0.02 3.28 16 16 C 0.07 1.74 7.53 72.49 0.55 2.28 16 17 O -0.39 -11.11 11.31 -148.98 -1.69 -12.80 16 18 C 0.09 2.76 5.96 72.48 0.43 3.19 16 19 C -0.19 -7.91 9.88 30.59 0.30 -7.61 16 20 C -0.17 -7.84 9.49 30.59 0.29 -7.55 16 21 H 0.26 13.89 8.32 -92.71 -0.77 13.12 16 22 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 23 H 0.06 2.25 6.78 -2.38 -0.02 2.24 16 24 H 0.35 15.28 7.64 -89.70 -0.68 14.59 16 25 H 0.10 2.79 8.06 -2.39 -0.02 2.77 16 26 H 0.09 2.98 8.14 -2.38 -0.02 2.96 16 27 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.09 2.71 8.01 -2.39 -0.02 2.69 16 30 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.09 3.32 8.08 -2.38 -0.02 3.30 16 32 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 33 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16 34 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -56.60 282.96 0.79 -55.81 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: 0.39 Total: 27.80 kcal Atomic # 6 Polarization: -39.82 SS G_CDS: 2.84 Total: -36.97 kcal Atomic # 7 Polarization: -75.53 SS G_CDS: -2.79 Total: -78.32 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: -1.69 Total: -12.80 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Total: -56.60 0.79 -55.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718061528.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.585 kcal (2) G-P(sol) polarization free energy of solvation -56.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds