Wall clock time and date at job start Mon Mar 30 2020 02:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99845 * 2 1 4 4 H 1.48498 * 109.47171 * 89.99959 * 3 2 1 5 5 H 1.48497 * 109.47138 * 210.00490 * 3 2 1 6 6 H 1.48500 * 109.47194 * 330.00333 * 3 2 1 7 7 C 1.37870 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.08012 * 119.99648 * 185.24926 * 7 2 1 9 9 C 1.50691 * 120.00090 * 5.24564 * 7 2 1 10 10 C 1.53005 * 115.55174 * 275.14308 * 9 7 2 11 11 N 1.46901 * 109.47138 * 294.80986 * 10 9 7 12 12 C 1.46896 * 110.99848 * 185.02748 * 11 10 9 13 13 C 1.53000 * 119.80391 * 248.97600 * 12 11 10 14 14 C 1.54509 * 122.36804 * 176.59922 * 12 11 10 15 15 H 1.09005 * 122.36242 * 359.44220 * 14 12 11 16 16 C 1.54477 * 104.06318 * 223.21264 * 14 12 11 17 17 O 1.44423 * 104.80570 * 336.01913 * 16 14 12 18 18 C 1.44430 * 105.27414 * 40.50992 * 17 16 14 19 19 C 1.53002 * 117.49984 * 129.47824 * 9 7 2 20 20 C 1.52997 * 117.50044 * 60.82174 * 9 7 2 21 21 H 0.97006 * 120.00350 * 354.99329 * 1 2 3 22 22 H 1.08995 * 109.46679 * 54.80942 * 10 9 7 23 23 H 1.08999 * 109.47142 * 174.80878 * 10 9 7 24 24 H 1.00896 * 111.00396 * 61.06916 * 11 10 9 25 25 H 1.09001 * 117.43551 * 355.36027 * 13 12 11 26 26 H 1.09009 * 117.43227 * 140.01141 * 13 12 11 27 27 H 1.09002 * 110.37453 * 217.18542 * 16 14 12 28 28 H 1.09003 * 110.46659 * 94.89478 * 16 14 12 29 29 H 1.08998 * 110.37323 * 200.65664 * 18 17 16 30 30 H 1.09007 * 110.46609 * 78.36754 * 18 17 16 31 31 H 1.09008 * 117.49802 * 359.97438 * 19 9 7 32 32 H 1.09005 * 117.50493 * 145.01650 * 19 9 7 33 33 H 1.09005 * 117.49645 * 214.98281 * 20 9 7 34 34 H 1.09003 * 117.50048 * 359.96829 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 1.4000 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0812 -1.1959 0.0850 9 6 1.2558 -2.4962 -0.1204 10 6 0.7121 -3.0680 1.1905 11 7 1.8326 -3.4307 2.0685 12 6 1.3523 -4.0933 3.2884 13 6 1.4669 -3.3796 4.6369 14 6 2.3150 -4.6541 4.3589 15 1 3.3987 -4.5940 4.2580 16 6 1.7083 -6.0261 4.7276 17 8 0.3090 -5.9141 4.3879 18 6 0.2777 -5.1927 3.1370 19 6 1.7334 -3.4907 -1.1805 20 6 0.4268 -2.7206 -1.3866 21 1 -0.4851 0.8369 0.0733 22 1 0.0917 -2.3197 1.6835 23 1 0.1139 -3.9545 0.9798 24 1 2.3927 -2.6221 2.2928 25 1 1.9800 -2.4181 4.6542 26 1 0.6310 -3.4777 5.3297 27 1 1.8256 -6.2187 5.7940 28 1 2.1777 -6.8193 4.1456 29 1 -0.7039 -4.7452 2.9816 30 1 0.5272 -5.8556 2.3084 31 1 2.5890 -3.2028 -1.7915 32 1 1.6600 -4.5523 -0.9442 33 1 -0.5059 -3.2757 -1.2858 34 1 0.4225 -1.9259 -2.1328 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718061529.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:23 Heat of formation + Delta-G solvation = 13.279173 kcal Electronic energy + Delta-G solvation = -15558.013389 eV Core-core repulsion = 13071.642967 eV Total energy + Delta-G solvation = -2486.370421 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.07691 -36.83121 -34.82170 -32.05762 -31.77461 -28.04259 -25.69399 -25.63099 -24.25382 -21.00478 -20.55411 -19.30213 -19.01224 -16.40776 -16.05390 -15.63218 -15.00209 -14.63222 -14.57080 -13.84588 -13.31025 -12.82360 -12.62698 -12.47311 -11.86731 -11.79720 -11.27476 -11.21707 -10.99724 -10.93959 -10.51279 -10.36217 -10.13314 -9.82630 -9.63937 -9.26863 -8.79014 -8.43693 -8.10420 -7.43945 -6.05388 -4.12475 3.25190 3.33622 3.37038 3.74015 3.99187 4.37009 4.56586 4.76414 4.92091 5.12006 5.24003 5.34406 5.52168 5.59744 5.71678 5.78973 5.93774 5.97851 6.05102 6.11985 6.27897 6.43434 6.53593 6.74372 6.80303 6.86913 6.89931 7.15754 7.47822 7.53239 7.84702 7.88094 8.13619 8.46120 8.90985 9.53831 11.02395 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.033203 B = 0.007892 C = 0.007034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.094566 B = 3547.182754 C = 3979.472993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.071 3.929 3 Si 0.887 3.113 4 H -0.281 1.281 5 H -0.273 1.273 6 H -0.286 1.286 7 C -0.496 4.496 8 H 0.060 0.940 9 C 0.048 3.952 10 C 0.106 3.894 11 N -0.631 5.631 12 C 0.023 3.977 13 C -0.169 4.169 14 C -0.210 4.210 15 H 0.121 0.879 16 C 0.076 3.924 17 O -0.378 6.378 18 C 0.085 3.915 19 C -0.201 4.201 20 C -0.160 4.160 21 H 0.260 0.740 22 H 0.039 0.961 23 H 0.040 0.960 24 H 0.354 0.646 25 H 0.102 0.898 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.886 -7.645 6.813 10.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.133 4.133 3 Si 0.715 3.285 4 H -0.208 1.208 5 H -0.198 1.198 6 H -0.212 1.212 7 C -0.534 4.534 8 H 0.078 0.922 9 C 0.047 3.953 10 C -0.022 4.022 11 N -0.261 5.261 12 C -0.071 4.071 13 C -0.209 4.209 14 C -0.229 4.229 15 H 0.139 0.861 16 C 0.000 4.000 17 O -0.296 6.296 18 C 0.008 3.992 19 C -0.238 4.238 20 C -0.198 4.198 21 H 0.069 0.931 22 H 0.058 0.942 23 H 0.059 0.941 24 H 0.174 0.826 25 H 0.121 0.879 26 H 0.110 0.890 27 H 0.107 0.893 28 H 0.084 0.916 29 H 0.112 0.888 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.656 -8.193 6.482 10.578 hybrid contribution 0.328 1.865 0.326 1.921 sum 1.984 -6.328 6.808 9.504 Atomic orbital electron populations 1.69989 1.05842 1.26664 1.49048 1.25004 0.94794 0.98837 0.94624 0.86668 0.80042 0.83689 0.78088 1.20764 1.19808 1.21226 1.20465 0.92831 0.88784 1.51313 0.92214 1.18729 0.97642 0.93322 0.85573 1.21481 0.90543 0.96337 0.93819 1.60190 1.22031 1.32917 1.10982 1.23307 0.97185 0.99432 0.87162 1.23817 1.01765 0.94876 1.00468 1.24571 0.98537 0.93225 1.06577 0.86082 1.22833 0.81680 0.94793 1.00741 1.89119 1.24244 1.76756 1.39443 1.22772 0.98586 0.91138 0.86720 1.22885 0.97967 0.95820 1.07141 1.22533 0.92217 1.01400 1.03645 0.93057 0.94235 0.94112 0.82621 0.87923 0.88973 0.89311 0.91554 0.88832 0.90795 0.90853 0.91693 0.92133 0.90210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.35 12.90 55.43 0.72 -23.63 16 2 C 0.07 1.88 5.40 -17.82 -0.10 1.79 16 3 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.50 -13.07 8.32 -34.45 -0.29 -13.35 16 8 H 0.06 1.58 7.82 -52.48 -0.41 1.17 16 9 C 0.05 1.16 1.57 -155.66 -0.24 0.91 16 10 C 0.11 2.32 5.29 -3.82 -0.02 2.30 16 11 N -0.63 -12.24 6.82 -98.38 -0.67 -12.91 16 12 C 0.02 0.38 3.18 -130.04 -0.41 -0.03 16 13 C -0.17 -2.56 9.84 -25.35 -0.25 -2.81 16 14 C -0.21 -2.97 7.36 -87.67 -0.64 -3.61 16 15 H 0.12 1.62 8.14 -51.93 -0.42 1.19 16 16 C 0.08 0.98 7.54 37.93 0.29 1.27 16 17 O -0.38 -5.81 11.32 -35.23 -0.40 -6.21 16 18 C 0.09 1.34 5.92 37.93 0.22 1.57 16 19 C -0.20 -4.44 9.96 -26.70 -0.27 -4.70 16 20 C -0.16 -3.75 9.41 -26.70 -0.25 -4.01 16 21 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 22 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 23 H 0.04 0.84 6.96 -51.93 -0.36 0.47 16 24 H 0.35 7.17 8.22 -39.29 -0.32 6.84 16 25 H 0.10 1.53 8.14 -51.93 -0.42 1.10 16 26 H 0.09 1.36 8.07 -51.92 -0.42 0.94 16 27 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.09 1.46 8.07 -51.93 -0.42 1.04 16 30 H 0.07 1.15 8.14 -51.92 -0.42 0.73 16 31 H 0.07 1.62 8.14 -51.92 -0.42 1.20 16 32 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 34 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 LS Contribution 284.58 15.07 4.29 4.29 Total: -1.00 -27.39 284.58 -8.34 -35.73 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -5.30 Total: 7.76 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: -1.96 Total: -20.68 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: 0.04 Total: -36.55 kcal Atomic # 8 Polarization: -5.81 SS G_CDS: -0.40 Total: -6.21 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -27.39 -8.34 -35.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718061529.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.010 kcal (2) G-P(sol) polarization free energy of solvation -27.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds