Wall clock time and date at job start Mon Mar 30 2020 02:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99845 * 2 1 4 4 H 1.48498 * 109.47171 * 89.99959 * 3 2 1 5 5 H 1.48497 * 109.47138 * 210.00490 * 3 2 1 6 6 H 1.48500 * 109.47194 * 330.00333 * 3 2 1 7 7 C 1.37870 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.08012 * 119.99648 * 185.24926 * 7 2 1 9 9 C 1.50691 * 120.00090 * 5.24564 * 7 2 1 10 10 C 1.53005 * 115.55174 * 275.14308 * 9 7 2 11 11 N 1.46901 * 109.47138 * 294.80986 * 10 9 7 12 12 C 1.46896 * 110.99848 * 185.02748 * 11 10 9 13 13 C 1.53000 * 119.80391 * 248.97600 * 12 11 10 14 14 C 1.54509 * 122.36804 * 176.59922 * 12 11 10 15 15 H 1.09005 * 122.36242 * 359.44220 * 14 12 11 16 16 C 1.54477 * 104.06318 * 223.21264 * 14 12 11 17 17 O 1.44423 * 104.80570 * 336.01913 * 16 14 12 18 18 C 1.44430 * 105.27414 * 40.50992 * 17 16 14 19 19 C 1.53002 * 117.49984 * 129.47824 * 9 7 2 20 20 C 1.52997 * 117.50044 * 60.82174 * 9 7 2 21 21 H 0.97006 * 120.00350 * 354.99329 * 1 2 3 22 22 H 1.08995 * 109.46679 * 54.80942 * 10 9 7 23 23 H 1.08999 * 109.47142 * 174.80878 * 10 9 7 24 24 H 1.00896 * 111.00396 * 61.06916 * 11 10 9 25 25 H 1.09001 * 117.43551 * 355.36027 * 13 12 11 26 26 H 1.09009 * 117.43227 * 140.01141 * 13 12 11 27 27 H 1.09002 * 110.37453 * 217.18542 * 16 14 12 28 28 H 1.09003 * 110.46659 * 94.89478 * 16 14 12 29 29 H 1.08998 * 110.37323 * 200.65664 * 18 17 16 30 30 H 1.09007 * 110.46609 * 78.36754 * 18 17 16 31 31 H 1.09008 * 117.49802 * 359.97438 * 19 9 7 32 32 H 1.09005 * 117.50493 * 145.01650 * 19 9 7 33 33 H 1.09005 * 117.49645 * 214.98281 * 20 9 7 34 34 H 1.09003 * 117.50048 * 359.96829 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 1.4000 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0812 -1.1959 0.0850 9 6 1.2558 -2.4962 -0.1204 10 6 0.7121 -3.0680 1.1905 11 7 1.8326 -3.4307 2.0685 12 6 1.3523 -4.0933 3.2884 13 6 1.4669 -3.3796 4.6369 14 6 2.3150 -4.6541 4.3589 15 1 3.3987 -4.5940 4.2580 16 6 1.7083 -6.0261 4.7276 17 8 0.3090 -5.9141 4.3879 18 6 0.2777 -5.1927 3.1370 19 6 1.7334 -3.4907 -1.1805 20 6 0.4268 -2.7206 -1.3866 21 1 -0.4851 0.8369 0.0733 22 1 0.0917 -2.3197 1.6835 23 1 0.1139 -3.9545 0.9798 24 1 2.3927 -2.6221 2.2928 25 1 1.9800 -2.4181 4.6542 26 1 0.6310 -3.4777 5.3297 27 1 1.8256 -6.2187 5.7940 28 1 2.1777 -6.8193 4.1456 29 1 -0.7039 -4.7452 2.9816 30 1 0.5272 -5.8556 2.3084 31 1 2.5890 -3.2028 -1.7915 32 1 1.6600 -4.5523 -0.9442 33 1 -0.5059 -3.2757 -1.2858 34 1 0.4225 -1.9259 -2.1328 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718061529.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:23 Heat of formation + Delta-G solvation = -3.887264 kcal Electronic energy + Delta-G solvation = -15558.757781 eV Core-core repulsion = 13071.642967 eV Total energy + Delta-G solvation = -2487.114814 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.27791 -38.60839 -36.16994 -34.00663 -33.29379 -29.22966 -27.64075 -26.85313 -25.93628 -22.84479 -21.72855 -20.86108 -20.59306 -17.92800 -17.65401 -16.89900 -16.62152 -16.26659 -15.91214 -15.66158 -14.70974 -14.54860 -13.93662 -13.70273 -13.54304 -13.35115 -12.97227 -12.85503 -12.74737 -12.35275 -12.29960 -12.01386 -11.72318 -11.35740 -11.00500 -10.73630 -10.65533 -10.34824 -9.94538 -8.95703 -8.08957 -6.20825 1.39532 1.43249 1.51649 2.42118 2.52148 2.81761 3.19201 3.20454 3.58010 3.66278 3.73113 3.93435 4.21533 4.34894 4.47177 4.59759 4.63060 4.67990 4.73483 4.75094 4.82941 4.85481 4.99300 5.04313 5.07334 5.14752 5.29403 5.64640 5.66956 5.70185 5.79152 6.27885 6.46539 6.54082 6.88051 7.47800 8.98231 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.033203 B = 0.007892 C = 0.007034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.094566 B = 3547.182754 C = 3979.472993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.027 3.973 3 Si 0.946 3.054 4 H -0.276 1.276 5 H -0.270 1.270 6 H -0.288 1.288 7 C -0.505 4.505 8 H 0.053 0.947 9 C 0.024 3.976 10 C 0.124 3.876 11 N -0.629 5.629 12 C -0.009 4.009 13 C -0.170 4.170 14 C -0.184 4.184 15 H 0.133 0.867 16 C 0.073 3.927 17 O -0.388 6.388 18 C 0.089 3.911 19 C -0.178 4.178 20 C -0.167 4.167 21 H 0.258 0.742 22 H 0.005 0.995 23 H 0.052 0.948 24 H 0.346 0.654 25 H 0.101 0.899 26 H 0.095 0.905 27 H 0.115 0.885 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.898 -8.648 7.705 11.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.174 4.174 3 Si 0.772 3.228 4 H -0.201 1.201 5 H -0.195 1.195 6 H -0.214 1.214 7 C -0.543 4.543 8 H 0.071 0.929 9 C 0.024 3.976 10 C -0.005 4.005 11 N -0.258 5.258 12 C -0.102 4.102 13 C -0.210 4.210 14 C -0.203 4.203 15 H 0.151 0.849 16 C -0.003 4.003 17 O -0.306 6.306 18 C 0.012 3.988 19 C -0.215 4.215 20 C -0.205 4.205 21 H 0.067 0.933 22 H 0.023 0.977 23 H 0.070 0.930 24 H 0.164 0.836 25 H 0.119 0.881 26 H 0.113 0.887 27 H 0.133 0.867 28 H 0.101 0.899 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.681 -9.214 7.385 12.109 hybrid contribution 0.041 2.131 0.080 2.133 sum 2.722 -7.083 7.465 10.644 Atomic orbital electron populations 1.70095 1.07019 1.27167 1.50187 1.25643 0.95477 1.01706 0.94554 0.85742 0.78804 0.80061 0.78163 1.20147 1.19504 1.21399 1.20697 0.92683 0.90129 1.50801 0.92901 1.18890 0.98357 0.93541 0.86844 1.21157 0.90782 0.95535 0.92983 1.60166 1.21021 1.32214 1.12403 1.23447 0.99424 1.00585 0.86754 1.23820 1.02294 0.95576 0.99301 1.24719 0.98879 0.93401 1.03350 0.84890 1.23096 0.80346 0.94193 1.02677 1.89113 1.25893 1.76571 1.39052 1.22679 0.98024 0.90940 0.87175 1.22857 0.96825 0.96500 1.05349 1.22460 0.93534 1.01455 1.03050 0.93254 0.97662 0.92995 0.83558 0.88064 0.88675 0.86742 0.89938 0.89475 0.90609 0.90996 0.89529 0.90984 0.92514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.00 12.90 21.44 0.28 -50.72 16 2 C 0.03 1.42 5.40 84.65 0.46 1.88 16 3 Si 0.95 42.66 29.54 68.60 2.03 44.69 16 4 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 7 C -0.51 -26.73 8.32 25.60 0.21 -26.51 16 8 H 0.05 2.80 7.82 -2.90 -0.02 2.78 16 9 C 0.02 1.17 1.57 -52.93 -0.08 1.09 16 10 C 0.12 5.42 5.29 86.30 0.46 5.88 16 11 N -0.63 -23.97 6.82 -465.17 -3.17 -27.14 16 12 C -0.01 -0.29 3.18 4.54 0.01 -0.27 16 13 C -0.17 -4.91 9.84 31.49 0.31 -4.60 16 14 C -0.18 -4.73 7.36 -8.88 -0.07 -4.80 16 15 H 0.13 3.13 8.14 -2.38 -0.02 3.11 16 16 C 0.07 1.64 7.54 72.48 0.55 2.18 16 17 O -0.39 -11.07 11.32 -148.98 -1.69 -12.76 16 18 C 0.09 2.69 5.92 72.49 0.43 3.12 16 19 C -0.18 -7.65 9.96 30.62 0.30 -7.34 16 20 C -0.17 -7.83 9.41 30.62 0.29 -7.54 16 21 H 0.26 13.99 8.32 -92.70 -0.77 13.22 16 22 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 23 H 0.05 2.11 6.96 -2.39 -0.02 2.09 16 24 H 0.35 13.94 8.22 -89.70 -0.74 13.20 16 25 H 0.10 2.92 8.14 -2.39 -0.02 2.91 16 26 H 0.09 2.67 8.07 -2.38 -0.02 2.66 16 27 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.09 2.69 8.07 -2.39 -0.02 2.67 16 30 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 31 H 0.07 3.09 8.14 -2.38 -0.02 3.07 16 32 H 0.09 3.33 8.14 -2.38 -0.02 3.32 16 33 H 0.07 3.16 8.14 -2.38 -0.02 3.14 16 34 H 0.06 2.89 8.14 -2.39 -0.02 2.87 16 Total: -1.00 -57.36 284.58 0.66 -56.70 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: 0.34 Total: 26.16 kcal Atomic # 6 Polarization: -39.80 SS G_CDS: 2.87 Total: -36.93 kcal Atomic # 7 Polarization: -74.97 SS G_CDS: -2.89 Total: -77.87 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: -1.69 Total: -12.76 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -57.36 0.66 -56.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718061529.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.816 kcal (2) G-P(sol) polarization free energy of solvation -57.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds