Wall clock time and date at job start Mon Mar 30 2020 02:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00586 * 2 1 4 4 H 1.48498 * 109.47122 * 264.99941 * 3 2 1 5 5 H 1.48498 * 109.46457 * 24.99551 * 3 2 1 6 6 H 1.48492 * 109.47079 * 144.99539 * 3 2 1 7 7 C 1.37881 * 119.99945 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00298 * 182.36465 * 7 2 1 9 9 C 1.50699 * 119.99762 * 2.35692 * 7 2 1 10 10 C 1.53000 * 115.55129 * 177.28624 * 9 7 2 11 11 N 1.46902 * 109.46722 * 34.33622 * 10 9 7 12 12 C 1.48333 * 110.99933 * 76.80402 * 11 10 9 13 13 C 1.56005 * 104.99488 * 122.92363 * 12 11 10 14 14 H 1.09000 * 116.13037 * 158.77620 * 13 12 11 15 15 C 1.57069 * 99.73930 * 32.88838 * 13 12 11 16 16 C 1.49910 * 109.98140 * 193.30802 * 11 10 9 17 17 H 1.08999 * 116.86553 * 74.46920 * 16 11 10 18 18 C 1.56100 * 104.46882 * 304.06411 * 16 11 10 19 19 O 1.44111 * 105.40564 * 288.85992 * 18 16 11 20 20 C 1.52999 * 117.52157 * 322.99409 * 9 7 2 21 21 C 1.53006 * 60.00163 * 107.47869 * 20 9 7 22 22 H 0.97008 * 119.99550 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.47291 * 274.33424 * 10 9 7 24 24 H 1.09004 * 109.47126 * 154.33058 * 10 9 7 25 25 H 1.08996 * 110.34565 * 4.04046 * 12 11 10 26 26 H 1.09011 * 110.33701 * 241.79872 * 12 11 10 27 27 H 1.08990 * 112.45250 * 63.60091 * 15 13 12 28 28 H 1.09004 * 112.44985 * 191.26730 * 15 13 12 29 29 H 1.09005 * 110.25702 * 169.88078 * 18 16 11 30 30 H 1.08996 * 110.33604 * 47.88121 * 18 16 11 31 31 H 1.09003 * 117.49839 * 214.96788 * 20 9 7 32 32 H 1.08995 * 117.49883 * 359.97438 * 20 9 7 33 33 H 1.09003 * 117.49645 * 252.51375 * 21 20 9 34 34 H 1.08998 * 117.49652 * 107.49250 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.6025 1.9853 -1.3947 5 1 1.3979 2.6808 0.5916 6 1 3.4899 1.4728 0.8031 7 6 2.0045 -1.1941 -0.0005 8 1 3.0838 -1.1946 0.0381 9 6 1.2519 -2.4986 -0.0548 10 6 2.1182 -3.7582 -0.1158 11 7 3.3423 -3.5490 0.6689 12 6 3.0677 -3.6614 2.1223 13 6 4.0262 -4.7834 2.6286 14 1 4.2456 -4.7817 3.6963 15 6 5.2443 -4.5469 1.6656 16 6 4.3381 -4.6268 0.3620 17 1 4.8510 -4.5647 -0.5977 18 6 3.5781 -5.9569 0.6621 19 8 3.4517 -6.0103 2.0967 20 6 -0.0682 -2.5856 0.7137 21 6 -0.0759 -2.5170 -0.8148 22 1 -0.4850 0.8402 -0.0004 23 1 2.3824 -3.9676 -1.1523 24 1 1.5629 -4.6014 0.2951 25 1 2.0291 -3.9459 2.2908 26 1 3.2894 -2.7192 2.6237 27 1 5.7064 -3.5706 1.8111 28 1 5.9731 -5.3562 1.7098 29 1 4.1534 -6.8098 0.3019 30 1 2.5925 -5.9433 0.1967 31 1 -0.3195 -3.5403 1.1759 32 1 -0.3924 -1.6994 1.2591 33 1 -0.4053 -1.5854 -1.2751 34 1 -0.3323 -3.4265 -1.3581 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718290083.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:18 Heat of formation + Delta-G solvation = 29.822645 kcal Electronic energy + Delta-G solvation = -16183.477413 eV Core-core repulsion = 13697.824370 eV Total energy + Delta-G solvation = -2485.653043 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.70121 -36.64704 -34.16399 -31.54941 -30.24417 -29.44909 -25.84957 -24.83870 -23.92047 -21.19539 -20.58686 -19.50247 -18.63245 -16.69566 -16.26067 -15.72033 -15.16294 -14.64020 -13.92585 -13.29975 -13.04815 -12.64227 -12.35459 -11.94809 -11.81225 -11.57446 -11.20663 -11.07523 -10.99515 -10.91041 -10.60071 -10.49231 -10.04198 -9.91043 -9.46786 -9.18398 -8.70930 -8.25230 -7.94406 -7.57395 -5.83561 -3.85107 3.35675 3.42142 3.45977 3.91381 4.43758 4.49270 4.51152 4.80931 5.05121 5.12144 5.19559 5.47714 5.70507 5.81026 5.86236 5.91357 5.98360 6.04047 6.14702 6.32963 6.37720 6.49234 6.57327 6.77374 6.90786 7.06812 7.22744 7.32099 7.45311 7.65959 7.89454 8.16852 8.29723 8.69141 9.15964 9.68883 11.13343 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.035205 B = 0.009498 C = 0.008314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.161240 B = 2947.435994 C = 3366.963529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.049 3.951 3 Si 0.895 3.105 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.275 1.275 7 C -0.447 4.447 8 H 0.074 0.926 9 C 0.024 3.976 10 C 0.086 3.914 11 N -0.479 5.479 12 C 0.023 3.977 13 C 0.044 3.956 14 H 0.132 0.868 15 C -0.152 4.152 16 C 0.021 3.979 17 H 0.126 0.874 18 C 0.009 3.991 19 O -0.383 6.383 20 C -0.192 4.192 21 C -0.190 4.190 22 H 0.255 0.745 23 H 0.059 0.941 24 H 0.023 0.977 25 H 0.066 0.934 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.036 0.964 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.625 -8.316 2.327 11.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.151 4.151 3 Si 0.724 3.276 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.200 1.200 7 C -0.484 4.484 8 H 0.093 0.907 9 C 0.023 3.977 10 C -0.041 4.041 11 N -0.201 5.201 12 C -0.105 4.105 13 C -0.014 4.014 14 H 0.150 0.850 15 C -0.190 4.190 16 C -0.088 4.088 17 H 0.144 0.856 18 C -0.069 4.069 19 O -0.303 6.303 20 C -0.230 4.230 21 C -0.229 4.229 22 H 0.065 0.935 23 H 0.078 0.922 24 H 0.041 0.959 25 H 0.084 0.916 26 H 0.104 0.896 27 H 0.114 0.886 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.055 0.945 32 H 0.124 0.876 33 H 0.132 0.868 34 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 7.563 -7.797 2.311 11.106 hybrid contribution -0.102 0.197 -0.003 0.221 sum 7.461 -7.601 2.308 10.898 Atomic orbital electron populations 1.70031 1.05774 1.25619 1.51328 1.25077 0.94909 0.99174 0.95898 0.86560 0.79688 0.83370 0.78024 1.20921 1.21690 1.20000 1.20669 0.93508 0.87853 1.46404 0.90742 1.18967 0.85349 0.92750 1.00620 1.21933 0.89685 0.96481 0.96033 1.65434 1.10481 1.40785 1.03440 1.23818 0.98747 0.98177 0.89752 1.25123 0.92802 0.84952 0.98526 0.85042 1.24517 0.96765 1.02808 0.94876 1.25503 0.94337 0.89777 0.99173 0.85598 1.24245 1.01300 0.98838 0.82481 1.89004 1.81836 1.40300 1.19149 1.22844 1.06629 0.98878 0.94648 1.22851 1.05763 1.00090 0.94174 0.93456 0.92232 0.95892 0.91610 0.89564 0.88646 0.90489 0.91712 0.90459 0.94525 0.87641 0.86839 0.94416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.04 8.60 55.43 0.48 -24.57 16 2 C 0.05 1.34 5.28 -17.82 -0.09 1.25 16 3 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.45 -12.10 8.73 -34.44 -0.30 -12.40 16 8 H 0.07 2.03 7.17 -52.49 -0.38 1.65 16 9 C 0.02 0.59 2.19 -155.66 -0.34 0.25 16 10 C 0.09 1.80 3.86 -3.82 -0.01 1.78 16 11 N -0.48 -9.11 4.10 -215.24 -0.88 -9.99 16 12 C 0.02 0.42 5.95 -1.42 -0.01 0.41 16 13 C 0.04 0.64 5.89 -22.92 -0.14 0.50 16 14 H 0.13 1.58 8.14 -51.93 -0.42 1.16 16 15 C -0.15 -2.01 7.00 -21.21 -0.15 -2.16 16 16 C 0.02 0.31 5.24 -61.05 -0.32 -0.01 16 17 H 0.13 1.70 8.14 -51.93 -0.42 1.27 16 18 C 0.01 0.14 6.82 38.82 0.26 0.41 16 19 O -0.38 -6.36 11.24 -35.23 -0.40 -6.75 16 20 C -0.19 -4.86 9.32 -26.73 -0.25 -5.11 16 21 C -0.19 -4.82 9.37 -26.72 -0.25 -5.07 16 22 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 23 H 0.06 1.20 8.02 -51.93 -0.42 0.78 16 24 H 0.02 0.47 5.75 -51.93 -0.30 0.18 16 25 H 0.07 1.31 7.43 -51.93 -0.39 0.93 16 26 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 27 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 28 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 1.24 5.55 -51.93 -0.29 0.95 16 31 H 0.04 0.86 8.05 -51.93 -0.42 0.44 16 32 H 0.11 2.95 6.43 -51.93 -0.33 2.61 16 33 H 0.11 3.16 6.14 -51.93 -0.32 2.84 16 34 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 264.27 15.07 3.98 3.98 Total: -1.00 -28.98 264.27 -8.37 -37.35 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -4.93 Total: 3.70 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: -1.60 Total: -20.14 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: -0.41 Total: -34.56 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: -0.40 Total: -6.75 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -28.98 -8.37 -37.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718290083.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.174 kcal (2) G-P(sol) polarization free energy of solvation -28.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds