Wall clock time and date at job start Mon Mar 30 2020 02:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00586 * 2 1 4 4 H 1.48498 * 109.47122 * 264.99941 * 3 2 1 5 5 H 1.48498 * 109.46457 * 24.99551 * 3 2 1 6 6 H 1.48492 * 109.47079 * 144.99539 * 3 2 1 7 7 C 1.37881 * 119.99945 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00298 * 182.36465 * 7 2 1 9 9 C 1.50699 * 119.99762 * 2.35692 * 7 2 1 10 10 C 1.53000 * 115.55129 * 177.28624 * 9 7 2 11 11 N 1.46902 * 109.46722 * 34.33622 * 10 9 7 12 12 C 1.48333 * 110.99933 * 76.80402 * 11 10 9 13 13 C 1.56005 * 104.99488 * 122.92363 * 12 11 10 14 14 H 1.09000 * 116.13037 * 158.77620 * 13 12 11 15 15 C 1.57069 * 99.73930 * 32.88838 * 13 12 11 16 16 C 1.49910 * 109.98140 * 193.30802 * 11 10 9 17 17 H 1.08999 * 116.86553 * 74.46920 * 16 11 10 18 18 C 1.56100 * 104.46882 * 304.06411 * 16 11 10 19 19 O 1.44111 * 105.40564 * 288.85992 * 18 16 11 20 20 C 1.52999 * 117.52157 * 322.99409 * 9 7 2 21 21 C 1.53006 * 60.00163 * 107.47869 * 20 9 7 22 22 H 0.97008 * 119.99550 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.47291 * 274.33424 * 10 9 7 24 24 H 1.09004 * 109.47126 * 154.33058 * 10 9 7 25 25 H 1.08996 * 110.34565 * 4.04046 * 12 11 10 26 26 H 1.09011 * 110.33701 * 241.79872 * 12 11 10 27 27 H 1.08990 * 112.45250 * 63.60091 * 15 13 12 28 28 H 1.09004 * 112.44985 * 191.26730 * 15 13 12 29 29 H 1.09005 * 110.25702 * 169.88078 * 18 16 11 30 30 H 1.08996 * 110.33604 * 47.88121 * 18 16 11 31 31 H 1.09003 * 117.49839 * 214.96788 * 20 9 7 32 32 H 1.08995 * 117.49883 * 359.97438 * 20 9 7 33 33 H 1.09003 * 117.49645 * 252.51375 * 21 20 9 34 34 H 1.08998 * 117.49652 * 107.49250 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.6025 1.9853 -1.3947 5 1 1.3979 2.6808 0.5916 6 1 3.4899 1.4728 0.8031 7 6 2.0045 -1.1941 -0.0005 8 1 3.0838 -1.1946 0.0381 9 6 1.2519 -2.4986 -0.0548 10 6 2.1182 -3.7582 -0.1158 11 7 3.3423 -3.5490 0.6689 12 6 3.0677 -3.6614 2.1223 13 6 4.0262 -4.7834 2.6286 14 1 4.2456 -4.7817 3.6963 15 6 5.2443 -4.5469 1.6656 16 6 4.3381 -4.6268 0.3620 17 1 4.8510 -4.5647 -0.5977 18 6 3.5781 -5.9569 0.6621 19 8 3.4517 -6.0103 2.0967 20 6 -0.0682 -2.5856 0.7137 21 6 -0.0759 -2.5170 -0.8148 22 1 -0.4850 0.8402 -0.0004 23 1 2.3824 -3.9676 -1.1523 24 1 1.5629 -4.6014 0.2951 25 1 2.0291 -3.9459 2.2908 26 1 3.2894 -2.7192 2.6237 27 1 5.7064 -3.5706 1.8111 28 1 5.9731 -5.3562 1.7098 29 1 4.1534 -6.8098 0.3019 30 1 2.5925 -5.9433 0.1967 31 1 -0.3195 -3.5403 1.1759 32 1 -0.3924 -1.6994 1.2591 33 1 -0.4053 -1.5854 -1.2751 34 1 -0.3323 -3.4265 -1.3581 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718290083.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:17 Heat of formation + Delta-G solvation = 11.522962 kcal Electronic energy + Delta-G solvation = -16184.270947 eV Core-core repulsion = 13697.824370 eV Total energy + Delta-G solvation = -2486.446577 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.96074 -38.52652 -35.60313 -33.55799 -31.61423 -30.69612 -27.77487 -26.44230 -25.31553 -22.72534 -22.28093 -21.09789 -20.25483 -18.13382 -17.54588 -17.43280 -16.94343 -16.21261 -15.56482 -14.95892 -14.64623 -14.28665 -13.61932 -13.52548 -13.02006 -13.00365 -12.89328 -12.74325 -12.49333 -12.35289 -12.23141 -12.14328 -11.94136 -11.91601 -11.28145 -10.74491 -10.50778 -10.23142 -9.98866 -9.01016 -7.92554 -6.00265 1.44688 1.45804 1.55526 2.49033 2.76365 3.02710 3.19139 3.36617 3.60881 3.87284 3.92750 4.01203 4.29909 4.38515 4.50943 4.54127 4.68943 4.73381 4.79270 4.85433 4.94655 5.01746 5.04314 5.09428 5.20085 5.29328 5.37660 5.64940 5.74602 5.98878 6.03941 6.17687 6.26910 6.63663 7.05074 7.56325 9.02243 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.035205 B = 0.009498 C = 0.008314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.161240 B = 2947.435994 C = 3366.963529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.001 3.999 3 Si 0.956 3.044 4 H -0.279 1.279 5 H -0.293 1.293 6 H -0.269 1.269 7 C -0.459 4.459 8 H 0.071 0.929 9 C 0.018 3.982 10 C 0.100 3.900 11 N -0.500 5.500 12 C 0.021 3.979 13 C 0.051 3.949 14 H 0.160 0.840 15 C -0.137 4.137 16 C 0.018 3.982 17 H 0.145 0.855 18 C 0.010 3.990 19 O -0.401 6.401 20 C -0.191 4.191 21 C -0.192 4.192 22 H 0.252 0.748 23 H 0.067 0.933 24 H 0.023 0.977 25 H 0.038 0.962 26 H 0.073 0.927 27 H 0.097 0.903 28 H 0.105 0.895 29 H 0.093 0.907 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.754 -9.271 2.394 13.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.196 4.196 3 Si 0.783 3.217 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.193 1.193 7 C -0.496 4.496 8 H 0.089 0.911 9 C 0.017 3.983 10 C -0.028 4.028 11 N -0.223 5.223 12 C -0.108 4.108 13 C -0.006 4.006 14 H 0.177 0.823 15 C -0.174 4.174 16 C -0.090 4.090 17 H 0.162 0.838 18 C -0.068 4.068 19 O -0.321 6.321 20 C -0.229 4.229 21 C -0.231 4.231 22 H 0.062 0.938 23 H 0.085 0.915 24 H 0.041 0.959 25 H 0.056 0.944 26 H 0.092 0.908 27 H 0.116 0.884 28 H 0.123 0.877 29 H 0.111 0.889 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.703 -8.763 2.377 13.289 hybrid contribution -0.788 0.489 -0.019 0.927 sum 8.915 -8.275 2.357 12.390 Atomic orbital electron populations 1.70195 1.06936 1.25979 1.51974 1.25796 0.95680 1.02278 0.95865 0.85594 0.78546 0.79538 0.78017 1.20527 1.21876 1.19324 1.20903 0.93505 0.89014 1.46208 0.91072 1.19184 0.85554 0.94063 0.99487 1.21688 0.90114 0.94188 0.96859 1.65293 1.10150 1.43247 1.03636 1.23761 0.98251 0.99065 0.89709 1.25292 0.92240 0.82831 1.00279 0.82294 1.24500 0.96302 1.04009 0.92636 1.25725 0.93778 0.88420 1.01075 0.83755 1.24278 1.00874 0.99827 0.81830 1.88993 1.82334 1.40763 1.20003 1.22653 1.07617 0.98195 0.94476 1.22739 1.06560 0.99752 0.94015 0.93823 0.91504 0.95859 0.94356 0.90822 0.88423 0.87668 0.88894 0.92072 0.93064 0.90646 0.89589 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.54 8.60 21.45 0.18 -52.35 16 2 C 0.00 0.05 5.28 84.66 0.45 0.50 16 3 Si 0.96 44.28 29.54 68.60 2.03 46.31 16 4 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.46 -24.97 8.73 25.60 0.22 -24.75 16 8 H 0.07 3.86 7.17 -2.91 -0.02 3.83 16 9 C 0.02 0.90 2.19 -52.93 -0.12 0.78 16 10 C 0.10 4.08 3.86 86.30 0.33 4.42 16 11 N -0.50 -18.43 4.10 -834.90 -3.42 -21.85 16 12 C 0.02 0.73 5.95 87.07 0.52 1.25 16 13 C 0.05 1.36 5.89 33.07 0.19 1.55 16 14 H 0.16 3.32 8.14 -2.39 -0.02 3.30 16 15 C -0.14 -3.13 7.00 34.17 0.24 -2.89 16 16 C 0.02 0.49 5.24 47.55 0.25 0.74 16 17 H 0.14 3.39 8.14 -2.39 -0.02 3.37 16 18 C 0.01 0.26 6.82 73.06 0.50 0.76 16 19 O -0.40 -12.31 11.24 -148.98 -1.67 -13.98 16 20 C -0.19 -9.88 9.32 30.60 0.29 -9.59 16 21 C -0.19 -9.83 9.37 30.60 0.29 -9.55 16 22 H 0.25 14.10 8.31 -92.70 -0.77 13.33 16 23 H 0.07 2.60 8.02 -2.39 -0.02 2.58 16 24 H 0.02 0.95 5.75 -2.38 -0.01 0.94 16 25 H 0.04 1.54 7.43 -2.39 -0.02 1.53 16 26 H 0.07 2.73 8.14 -2.38 -0.02 2.71 16 27 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 30 H 0.06 1.87 5.55 -2.39 -0.01 1.85 16 31 H 0.05 2.44 8.05 -2.39 -0.02 2.42 16 32 H 0.08 4.36 6.43 -2.39 -0.02 4.34 16 33 H 0.09 4.91 6.14 -2.39 -0.01 4.89 16 34 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -62.25 264.27 1.35 -60.90 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 1.08 Total: 17.76 kcal Atomic # 6 Polarization: -39.94 SS G_CDS: 3.16 Total: -36.78 kcal Atomic # 7 Polarization: -70.96 SS G_CDS: -3.24 Total: -74.20 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -1.67 Total: -13.98 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -62.25 1.35 -60.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718290083.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.428 kcal (2) G-P(sol) polarization free energy of solvation -62.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds