Wall clock time and date at job start Mon Mar 30 2020 03:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00058 * 2 1 4 4 H 1.48498 * 109.47125 * 269.99663 * 3 2 1 5 5 H 1.48501 * 109.47037 * 29.99570 * 3 2 1 6 6 H 1.48499 * 109.47092 * 149.99663 * 3 2 1 7 7 C 1.37878 * 120.00383 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00792 * 188.68822 * 7 2 1 9 9 C 1.50702 * 119.99554 * 8.68407 * 7 2 1 10 10 C 1.53008 * 115.56404 * 278.01038 * 9 7 2 11 11 N 1.46896 * 109.46782 * 320.17932 * 10 9 7 12 12 C 1.47850 * 110.99955 * 285.36530 * 11 10 9 13 13 C 1.54912 * 104.79652 * 213.63745 * 12 11 10 14 14 C 1.55145 * 101.65132 * 37.07195 * 13 12 11 15 15 H 1.08992 * 110.70858 * 82.72593 * 14 13 12 16 16 C 1.50701 * 110.85068 * 205.89541 * 14 13 12 17 17 O 1.20765 * 119.99554 * 233.68360 * 16 14 13 18 18 C 1.47449 * 111.00031 * 164.52626 * 11 10 9 19 19 C 1.53002 * 117.49899 * 63.69768 * 9 7 2 20 20 C 1.53001 * 60.02916 * 107.50082 * 19 9 7 21 21 H 0.96998 * 119.99827 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.46776 * 80.17714 * 10 9 7 23 23 H 1.08994 * 109.46979 * 200.17562 * 10 9 7 24 24 H 1.09002 * 110.37065 * 332.46993 * 12 11 10 25 25 H 1.09005 * 110.37204 * 94.80961 * 12 11 10 26 26 H 1.09001 * 110.99045 * 278.98053 * 13 12 11 27 27 H 1.09000 * 111.02302 * 155.17446 * 13 12 11 28 28 H 1.07991 * 120.00377 * 53.68660 * 16 14 13 29 29 H 1.08999 * 109.88290 * 242.66235 * 18 11 10 30 30 H 1.08999 * 109.88442 * 3.68737 * 18 11 10 31 31 H 1.08994 * 117.50068 * 0.02562 * 19 9 7 32 32 H 1.08996 * 117.49922 * 214.99923 * 19 9 7 33 33 H 1.09009 * 117.49764 * 107.47938 * 20 19 9 34 34 H 1.08998 * 117.50254 * 252.47264 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0753 -1.1994 0.1418 9 6 1.2641 -2.4917 -0.1959 10 6 0.5953 -3.0662 1.0546 11 7 1.4784 -2.8765 2.2130 12 6 2.6111 -3.8260 2.1768 13 6 2.9033 -4.1502 3.6632 14 6 1.4734 -4.1783 4.2646 15 1 1.0030 -5.1468 4.0952 16 6 1.5038 -3.8528 5.7357 17 8 0.9918 -4.6038 6.5310 18 6 0.7427 -3.0714 3.4759 19 6 0.5582 -2.7063 -1.5363 20 6 1.8347 -3.4847 -1.2115 21 1 -0.4850 0.8400 -0.0004 22 1 -0.3496 -2.5519 1.2300 23 1 0.4085 -4.1302 0.9104 24 1 2.3302 -4.7315 1.6389 25 1 3.4808 -3.3617 1.7117 26 1 3.5049 -3.3661 4.1229 27 1 3.3882 -5.1212 3.7636 28 1 1.9833 -2.9481 6.0788 29 1 0.7415 -2.1454 4.0509 30 1 -0.2818 -3.3779 3.2646 31 1 0.6297 -1.9092 -2.2762 32 1 -0.3828 -3.2564 -1.5272 33 1 1.7335 -4.5469 -0.9883 34 1 2.7457 -3.1998 -1.7378 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718970101.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:31 Heat of formation + Delta-G solvation = -2.556298 kcal Electronic energy + Delta-G solvation = -15586.882279 eV Core-core repulsion = 13099.825180 eV Total energy + Delta-G solvation = -2487.057099 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.51609 -38.03022 -36.06804 -31.80093 -31.43678 -28.88059 -25.88578 -24.89225 -22.87273 -21.10511 -20.68968 -20.17677 -18.99257 -16.47327 -15.86388 -15.75523 -14.68930 -14.45035 -14.11870 -13.74312 -13.53743 -13.38247 -12.91166 -12.31126 -11.90149 -11.54216 -11.27678 -11.01818 -10.96773 -10.87297 -10.67626 -10.48102 -10.39188 -10.03333 -9.61520 -9.38157 -8.75385 -8.29905 -7.99026 -7.38478 -5.89394 -3.88053 1.96207 3.37470 3.44539 3.47549 4.29181 4.52460 4.66766 4.82508 4.95677 5.06992 5.37475 5.42680 5.61138 5.67794 5.77393 5.88749 6.01151 6.15622 6.25387 6.28255 6.37478 6.49842 6.56576 6.60706 6.74613 6.94063 7.10351 7.37220 7.46254 7.48610 7.81688 8.02789 8.04173 8.60123 9.07253 9.73574 11.21687 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.027888 B = 0.008532 C = 0.007449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.764355 B = 3280.794491 C = 3758.061224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.072 3.928 3 Si 0.885 3.115 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.275 1.275 7 C -0.459 4.459 8 H 0.057 0.943 9 C 0.056 3.944 10 C 0.100 3.900 11 N -0.489 5.489 12 C 0.054 3.946 13 C -0.116 4.116 14 C -0.184 4.184 15 H 0.091 0.909 16 C 0.361 3.639 17 O -0.473 6.473 18 C 0.059 3.941 19 C -0.166 4.166 20 C -0.217 4.217 21 H 0.255 0.745 22 H 0.074 0.926 23 H 0.000 1.000 24 H 0.037 0.963 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.398 -6.120 5.609 8.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.130 4.130 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.200 1.200 7 C -0.497 4.497 8 H 0.075 0.925 9 C 0.056 3.944 10 C -0.028 4.028 11 N -0.212 5.212 12 C -0.074 4.074 13 C -0.154 4.154 14 C -0.204 4.204 15 H 0.109 0.891 16 C 0.218 3.782 17 O -0.344 6.344 18 C -0.069 4.069 19 C -0.204 4.204 20 C -0.254 4.254 21 H 0.065 0.935 22 H 0.093 0.907 23 H 0.018 0.982 24 H 0.055 0.945 25 H 0.103 0.897 26 H 0.099 0.901 27 H 0.089 0.911 28 H 0.114 0.886 29 H 0.094 0.906 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.129 -5.884 6.012 8.976 hybrid contribution 0.021 0.163 -0.200 0.259 sum 3.151 -5.722 5.812 8.743 Atomic orbital electron populations 1.70001 1.05805 1.25945 1.50508 1.24848 0.94635 0.98456 0.95035 0.86715 0.80067 0.84121 0.77709 1.21149 1.21614 1.19974 1.20140 0.92874 0.88321 1.48368 0.92529 1.18848 0.96492 0.93709 0.85399 1.21881 0.95583 0.94377 0.90945 1.63473 1.08406 1.49075 1.00275 1.22993 0.96323 0.94095 0.93949 1.22713 0.94046 1.01781 0.96850 1.23442 0.99538 1.01928 0.95531 0.89094 1.26042 0.74425 0.88014 0.89751 1.90370 1.35978 1.50019 1.58068 1.22747 0.96324 0.96079 0.91799 1.22556 0.92947 1.01399 1.03465 1.23061 0.97701 0.95380 1.09236 0.93496 0.90721 0.98154 0.94485 0.89714 0.90121 0.91109 0.88586 0.90613 0.92900 0.90193 0.92180 0.92200 0.90606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.69 13.13 55.43 0.73 -23.97 16 2 C 0.07 1.94 5.40 -17.82 -0.10 1.84 16 3 Si 0.89 21.08 29.55 -169.99 -5.02 16.06 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.46 -12.07 8.14 -34.44 -0.28 -12.35 16 8 H 0.06 1.51 7.83 -52.49 -0.41 1.10 16 9 C 0.06 1.33 1.30 -155.62 -0.20 1.13 16 10 C 0.10 2.16 4.75 -3.82 -0.02 2.14 16 11 N -0.49 -9.48 4.45 -231.24 -1.03 -10.51 16 12 C 0.05 0.89 6.36 -2.29 -0.01 0.88 16 13 C -0.12 -1.47 6.52 -24.59 -0.16 -1.63 16 14 C -0.18 -2.44 3.41 -89.95 -0.31 -2.75 16 15 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 16 C 0.36 4.47 10.38 36.01 0.37 4.84 16 17 O -0.47 -7.43 17.91 5.99 0.11 -7.32 16 18 C 0.06 0.95 6.43 -2.83 -0.02 0.93 16 19 C -0.17 -3.82 9.70 -26.73 -0.26 -4.08 16 20 C -0.22 -4.60 9.88 -26.70 -0.26 -4.86 16 21 H 0.26 6.91 8.31 -40.82 -0.34 6.58 16 22 H 0.07 1.78 7.87 -51.93 -0.41 1.37 16 23 H 0.00 0.01 7.49 -51.93 -0.39 -0.38 16 24 H 0.04 0.61 7.53 -51.93 -0.39 0.22 16 25 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 26 H 0.08 0.95 8.05 -51.93 -0.42 0.53 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.10 0.92 8.06 -52.49 -0.42 0.49 16 29 H 0.08 1.19 7.82 -51.93 -0.41 0.79 16 30 H 0.05 0.86 7.47 -51.93 -0.39 0.48 16 31 H 0.08 1.96 8.14 -51.93 -0.42 1.54 16 32 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 33 H 0.06 1.15 8.08 -51.92 -0.42 0.73 16 34 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 LS Contribution 285.97 15.07 4.31 4.31 Total: -1.00 -29.12 285.97 -7.48 -36.59 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -5.32 Total: -1.27 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: -1.25 Total: -13.89 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: -0.30 Total: -34.48 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: 0.11 Total: -7.32 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.12 -7.48 -36.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718970101.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.038 kcal (2) G-P(sol) polarization free energy of solvation -29.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds