Wall clock time and date at job start Mon Mar 30 2020 03:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00058 * 2 1 4 4 H 1.48498 * 109.47125 * 269.99663 * 3 2 1 5 5 H 1.48501 * 109.47037 * 29.99570 * 3 2 1 6 6 H 1.48499 * 109.47092 * 149.99663 * 3 2 1 7 7 C 1.37878 * 120.00383 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00792 * 188.68822 * 7 2 1 9 9 C 1.50702 * 119.99554 * 8.68407 * 7 2 1 10 10 C 1.53008 * 115.56404 * 278.01038 * 9 7 2 11 11 N 1.46896 * 109.46782 * 320.17932 * 10 9 7 12 12 C 1.47850 * 110.99955 * 285.36530 * 11 10 9 13 13 C 1.54912 * 104.79652 * 213.63745 * 12 11 10 14 14 C 1.55145 * 101.65132 * 37.07195 * 13 12 11 15 15 H 1.08992 * 110.70858 * 82.72593 * 14 13 12 16 16 C 1.50701 * 110.85068 * 205.89541 * 14 13 12 17 17 O 1.20765 * 119.99554 * 233.68360 * 16 14 13 18 18 C 1.47449 * 111.00031 * 164.52626 * 11 10 9 19 19 C 1.53002 * 117.49899 * 63.69768 * 9 7 2 20 20 C 1.53001 * 60.02916 * 107.50082 * 19 9 7 21 21 H 0.96998 * 119.99827 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.46776 * 80.17714 * 10 9 7 23 23 H 1.08994 * 109.46979 * 200.17562 * 10 9 7 24 24 H 1.09002 * 110.37065 * 332.46993 * 12 11 10 25 25 H 1.09005 * 110.37204 * 94.80961 * 12 11 10 26 26 H 1.09001 * 110.99045 * 278.98053 * 13 12 11 27 27 H 1.09000 * 111.02302 * 155.17446 * 13 12 11 28 28 H 1.07991 * 120.00377 * 53.68660 * 16 14 13 29 29 H 1.08999 * 109.88290 * 242.66235 * 18 11 10 30 30 H 1.08999 * 109.88442 * 3.68737 * 18 11 10 31 31 H 1.08994 * 117.50068 * 0.02562 * 19 9 7 32 32 H 1.08996 * 117.49922 * 214.99923 * 19 9 7 33 33 H 1.09009 * 117.49764 * 107.47938 * 20 19 9 34 34 H 1.08998 * 117.50254 * 252.47264 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0753 -1.1994 0.1418 9 6 1.2641 -2.4917 -0.1959 10 6 0.5953 -3.0662 1.0546 11 7 1.4784 -2.8765 2.2130 12 6 2.6111 -3.8260 2.1768 13 6 2.9033 -4.1502 3.6632 14 6 1.4734 -4.1783 4.2646 15 1 1.0030 -5.1468 4.0952 16 6 1.5038 -3.8528 5.7357 17 8 0.9918 -4.6038 6.5310 18 6 0.7427 -3.0714 3.4759 19 6 0.5582 -2.7063 -1.5363 20 6 1.8347 -3.4847 -1.2115 21 1 -0.4850 0.8400 -0.0004 22 1 -0.3496 -2.5519 1.2300 23 1 0.4085 -4.1302 0.9104 24 1 2.3302 -4.7315 1.6389 25 1 3.4808 -3.3617 1.7117 26 1 3.5049 -3.3661 4.1229 27 1 3.3882 -5.1212 3.7636 28 1 1.9833 -2.9481 6.0788 29 1 0.7415 -2.1454 4.0509 30 1 -0.2818 -3.3779 3.2646 31 1 0.6297 -1.9092 -2.2762 32 1 -0.3828 -3.2564 -1.5272 33 1 1.7335 -4.5469 -0.9883 34 1 2.7457 -3.1998 -1.7378 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718970101.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:30 Heat of formation + Delta-G solvation = -20.138631 kcal Electronic energy + Delta-G solvation = -15587.644706 eV Core-core repulsion = 13099.825180 eV Total energy + Delta-G solvation = -2487.819526 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.69264 -39.38570 -37.71828 -33.83120 -32.79476 -30.09416 -27.68464 -26.65256 -24.04045 -22.85964 -22.00699 -21.31575 -20.83541 -18.05912 -17.18831 -17.00393 -16.47828 -16.08000 -15.39653 -15.29883 -15.04924 -14.73229 -14.37487 -13.87958 -13.28208 -13.09522 -13.04467 -12.81348 -12.50750 -12.34914 -12.19721 -12.11498 -11.87199 -11.64351 -11.27093 -10.67267 -10.59748 -10.28884 -9.83151 -8.84338 -7.94380 -5.96984 0.96714 1.47285 1.49853 1.57780 2.55064 3.17976 3.36817 3.42453 3.57655 3.72567 3.84902 3.96138 4.39791 4.44794 4.48295 4.57619 4.67832 4.76247 4.79591 4.83244 4.98711 5.01312 5.04131 5.12146 5.23659 5.27370 5.32583 5.64483 5.72307 5.95098 6.38504 6.39008 6.45787 6.66261 7.03544 7.66468 9.15770 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.027888 B = 0.008532 C = 0.007449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.764355 B = 3280.794491 C = 3758.061224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.027 3.973 3 Si 0.939 3.061 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.269 1.269 7 C -0.461 4.461 8 H 0.048 0.952 9 C 0.032 3.968 10 C 0.114 3.886 11 N -0.515 5.515 12 C 0.052 3.948 13 C -0.102 4.102 14 C -0.174 4.174 15 H 0.087 0.913 16 C 0.375 3.625 17 O -0.506 6.506 18 C 0.057 3.943 19 C -0.176 4.176 20 C -0.189 4.189 21 H 0.252 0.748 22 H 0.043 0.957 23 H 0.012 0.988 24 H 0.037 0.963 25 H 0.071 0.929 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.137 0.863 29 H 0.078 0.922 30 H 0.043 0.957 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.746 -6.740 6.586 10.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.172 4.172 3 Si 0.767 3.233 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.193 1.193 7 C -0.499 4.499 8 H 0.066 0.934 9 C 0.031 3.969 10 C -0.014 4.014 11 N -0.238 5.238 12 C -0.076 4.076 13 C -0.140 4.140 14 C -0.194 4.194 15 H 0.105 0.895 16 C 0.234 3.766 17 O -0.379 6.379 18 C -0.071 4.071 19 C -0.214 4.214 20 C -0.226 4.226 21 H 0.061 0.939 22 H 0.061 0.939 23 H 0.030 0.970 24 H 0.055 0.945 25 H 0.089 0.911 26 H 0.114 0.886 27 H 0.113 0.887 28 H 0.153 0.847 29 H 0.097 0.903 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.499 -6.507 6.986 10.554 hybrid contribution -0.383 0.345 -0.546 0.750 sum 4.116 -6.163 6.440 9.818 Atomic orbital electron populations 1.70112 1.06893 1.26209 1.51949 1.25451 0.95277 1.01147 0.95280 0.85858 0.79105 0.80859 0.77501 1.21136 1.21806 1.19326 1.20340 0.92571 0.89665 1.47356 0.93394 1.18983 0.97458 0.93974 0.86485 1.21568 0.94441 0.94265 0.91141 1.63345 1.09101 1.50821 1.00543 1.22988 0.94659 0.93258 0.96653 1.22673 0.93837 1.03637 0.93884 1.23334 0.99463 1.00528 0.96115 0.89489 1.26364 0.73283 0.88381 0.88621 1.90381 1.37622 1.51366 1.58581 1.22712 0.95979 0.97372 0.91014 1.22489 0.94435 1.01644 1.02847 1.23031 0.96537 0.96193 1.06855 0.93882 0.93879 0.97024 0.94457 0.91101 0.88635 0.88660 0.84731 0.90350 0.93810 0.92422 0.91280 0.89678 0.90509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.70 13.13 21.45 0.28 -51.42 16 2 C 0.03 1.46 5.40 84.65 0.46 1.92 16 3 Si 0.94 43.36 29.55 68.60 2.03 45.39 16 4 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 5 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.46 -24.24 8.14 25.60 0.21 -24.03 16 8 H 0.05 2.55 7.83 -2.91 -0.02 2.52 16 9 C 0.03 1.50 1.30 -52.90 -0.07 1.43 16 10 C 0.11 4.93 4.75 86.31 0.41 5.34 16 11 N -0.51 -19.50 4.45 -885.50 -3.94 -23.44 16 12 C 0.05 1.61 6.36 86.77 0.55 2.16 16 13 C -0.10 -2.27 6.52 31.98 0.21 -2.06 16 14 C -0.17 -4.18 3.41 -10.36 -0.04 -4.22 16 15 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 16 C 0.38 8.15 10.38 71.24 0.74 8.89 16 17 O -0.51 -14.80 17.91 -1.47 -0.03 -14.82 16 18 C 0.06 1.79 6.43 86.64 0.56 2.34 16 19 C -0.18 -8.12 9.70 30.60 0.30 -7.82 16 20 C -0.19 -7.76 9.88 30.62 0.30 -7.46 16 21 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 22 H 0.04 2.09 7.87 -2.39 -0.02 2.08 16 23 H 0.01 0.47 7.49 -2.39 -0.02 0.45 16 24 H 0.04 1.14 7.53 -2.39 -0.02 1.13 16 25 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 26 H 0.10 1.87 8.05 -2.39 -0.02 1.85 16 27 H 0.09 1.70 8.14 -2.39 -0.02 1.69 16 28 H 0.14 1.99 8.06 -2.92 -0.02 1.97 16 29 H 0.08 2.37 7.82 -2.39 -0.02 2.35 16 30 H 0.04 1.42 7.47 -2.39 -0.02 1.40 16 31 H 0.06 2.88 8.14 -2.39 -0.02 2.86 16 32 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 33 H 0.08 3.06 8.08 -2.38 -0.02 3.04 16 34 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 Total: -1.00 -62.19 285.97 3.03 -59.16 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: 1.06 Total: 8.64 kcal Atomic # 6 Polarization: -27.13 SS G_CDS: 3.63 Total: -23.50 kcal Atomic # 7 Polarization: -71.21 SS G_CDS: -3.66 Total: -74.86 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -0.03 Total: -14.82 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -62.19 3.03 -59.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718970101.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.019 kcal (2) G-P(sol) polarization free energy of solvation -62.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds