Wall clock time and date at job start Mon Mar 30 2020 02:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 119.99919 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00147 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00098 * 3 2 1 6 6 H 1.48504 * 109.46913 * 329.99897 * 3 2 1 7 7 C 1.38955 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99776 * 0.02562 * 7 2 1 9 9 N 1.37090 * 119.99992 * 179.97438 * 7 2 1 10 10 C 1.34784 * 119.99714 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00111 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99627 * 180.02562 * 10 9 7 13 13 H 1.09002 * 109.26559 * 300.49433 * 12 10 9 14 14 C 1.51384 * 109.27290 * 59.99254 * 12 10 9 15 15 C 1.49510 * 117.52183 * 194.07371 * 14 12 10 16 16 C 1.50520 * 113.04245 * 280.28150 * 15 14 12 17 17 C 1.31662 * 116.92363 * 84.57453 * 16 15 14 18 18 C 1.50807 * 118.08608 * 359.71887 * 17 16 15 19 19 C 1.52714 * 108.95869 * 255.14732 * 18 17 16 20 20 C 1.53852 * 109.26449 * 181.03563 * 12 10 9 21 21 H 0.97001 * 119.99781 * 359.97438 * 1 2 3 22 22 H 0.96999 * 120.00238 * 359.97438 * 9 7 2 23 23 H 1.09004 * 107.83662 * 316.11079 * 14 12 10 24 24 H 1.09004 * 107.83340 * 72.03913 * 14 12 10 25 25 H 1.08997 * 108.76833 * 41.20271 * 15 14 12 26 26 H 1.09001 * 108.76697 * 159.36262 * 15 14 12 27 27 H 1.07995 * 121.53729 * 264.58748 * 16 15 14 28 28 H 1.07994 * 120.95582 * 179.70685 * 17 16 15 29 29 H 1.09009 * 109.55363 * 14.98637 * 18 17 16 30 30 H 1.08991 * 109.55532 * 135.19628 * 18 17 16 31 31 H 1.08997 * 109.62276 * 177.54254 * 19 18 17 32 32 H 1.09002 * 109.61985 * 297.90605 * 19 18 17 33 33 H 1.09000 * 109.80182 * 253.41208 * 20 12 10 34 34 H 1.08998 * 109.80175 * 14.28720 * 20 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 1.4001 5 1 3.5457 1.4402 -0.7001 6 1 1.4455 2.6527 -0.7001 7 6 2.0090 -1.2034 0.0005 8 1 1.4690 -2.1387 0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3706 0.0000 11 8 3.4473 -3.4210 0.0009 12 6 5.5607 -2.3705 0.0000 13 1 5.9203 -1.8483 -0.8866 14 6 6.0604 -1.6558 1.2375 15 6 7.5024 -1.2627 1.2734 16 6 8.4158 -2.4049 1.6291 17 6 8.7919 -3.1959 0.6461 18 6 8.2771 -2.8998 -0.7401 19 6 7.1892 -3.9121 -1.0921 20 6 6.0684 -3.8226 -0.0262 21 1 -0.4850 0.8401 0.0004 22 1 3.8649 -0.3633 -0.0011 23 1 5.4646 -0.7518 1.3644 24 1 5.8685 -2.3002 2.0955 25 1 7.7858 -0.8791 0.2932 26 1 7.6312 -0.4685 2.0088 27 1 8.7471 -2.5683 2.6439 28 1 9.4503 -4.0326 0.8272 29 1 7.8609 -1.8927 -0.7673 30 1 9.0946 -2.9762 -1.4569 31 1 6.7788 -3.6814 -2.0751 32 1 7.6124 -4.9166 -1.0988 33 1 6.4666 -4.0923 0.9519 34 1 5.2521 -4.4944 -0.2915 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719059399.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:42 Heat of formation + Delta-G solvation = -29.417529 kcal Electronic energy + Delta-G solvation = -15666.983875 eV Core-core repulsion = 13178.761985 eV Total energy + Delta-G solvation = -2488.221889 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.56981 -37.54632 -34.09392 -32.86596 -32.80725 -31.50758 -27.05300 -26.05107 -24.31041 -21.85432 -20.78379 -19.16957 -18.38545 -17.80110 -16.41967 -15.30111 -14.97098 -14.86645 -14.16689 -13.79598 -13.62128 -13.23555 -12.93395 -12.48125 -12.28872 -12.16711 -11.78977 -11.25110 -11.14510 -10.99166 -10.70706 -10.60511 -10.41040 -10.07626 -9.95965 -9.80389 -9.55325 -8.91803 -8.39214 -8.16161 -6.30005 -3.80963 2.28294 3.03483 3.07413 3.15459 3.75489 4.11157 4.64252 4.75559 4.96438 5.12520 5.13777 5.25448 5.35088 5.44773 5.52162 5.61901 5.69900 5.81437 5.88975 5.99086 6.05276 6.10389 6.25942 6.29514 6.40196 6.45419 6.68139 6.73596 6.82522 6.95570 7.59313 8.17535 8.61422 8.96624 9.45131 9.85977 10.83272 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.038746 B = 0.007879 C = 0.007051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.488160 B = 3552.840511 C = 3970.232292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.042 3.958 3 Si 0.876 3.124 4 H -0.270 1.270 5 H -0.269 1.269 6 H -0.276 1.276 7 C -0.306 4.306 8 H 0.119 0.881 9 N -0.589 5.589 10 C 0.455 3.545 11 O -0.576 6.576 12 C -0.096 4.096 13 H 0.082 0.918 14 C -0.109 4.109 15 C -0.093 4.093 16 C -0.161 4.161 17 C -0.153 4.153 18 C -0.110 4.110 19 C -0.113 4.113 20 C -0.109 4.109 21 H 0.273 0.727 22 H 0.371 0.629 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.111 0.889 28 H 0.106 0.894 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.505 -0.652 0.629 17.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.161 4.161 3 Si 0.703 3.297 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.201 1.201 7 C -0.435 4.435 8 H 0.137 0.863 9 N -0.227 5.227 10 C 0.241 3.759 11 O -0.459 6.459 12 C -0.118 4.118 13 H 0.100 0.900 14 C -0.147 4.147 15 C -0.130 4.130 16 C -0.179 4.179 17 C -0.171 4.171 18 C -0.147 4.147 19 C -0.150 4.150 20 C -0.147 4.147 21 H 0.084 0.916 22 H 0.204 0.796 23 H 0.079 0.921 24 H 0.082 0.918 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.129 0.871 28 H 0.124 0.876 29 H 0.101 0.899 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 16.854 -1.215 0.630 16.910 hybrid contribution 0.575 1.428 0.091 1.542 sum 17.430 0.213 0.721 17.446 Atomic orbital electron populations 1.69625 1.05626 1.27446 1.49499 1.25037 0.95483 0.97924 0.97681 0.86713 0.79884 0.84158 0.78961 1.19564 1.19428 1.20123 1.19470 0.79430 0.96603 1.47950 0.86309 1.42245 1.07438 1.06312 1.66734 1.19832 0.88625 0.84242 0.83184 1.90516 1.69628 1.31098 1.54660 1.21086 0.93952 0.98019 0.98748 0.90037 1.20505 0.95044 1.00782 0.98346 1.20069 0.94051 0.96800 1.02086 1.22985 0.98939 0.97553 0.98398 1.23013 0.99801 0.98983 0.95303 1.21080 0.98132 1.01068 0.94434 1.21855 0.95634 0.98519 0.99036 1.22144 0.98046 0.95591 0.98873 0.91645 0.79628 0.92143 0.91803 0.90817 0.91746 0.87137 0.87564 0.89911 0.92119 0.91829 0.92212 0.91712 0.89396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.00 13.96 55.50 0.77 -25.23 16 2 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 3 Si 0.88 19.60 27.74 -169.99 -4.71 14.88 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.27 -5.50 6.52 56.52 0.37 -5.13 16 6 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.31 -8.78 10.16 -14.93 -0.15 -8.93 16 8 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 9 N -0.59 -14.33 4.82 -10.96 -0.05 -14.38 16 10 C 0.45 10.55 7.08 -10.98 -0.08 10.48 16 11 O -0.58 -15.70 14.76 5.55 0.08 -15.62 16 12 C -0.10 -1.65 2.07 -92.15 -0.19 -1.84 16 13 H 0.08 1.27 6.57 -51.93 -0.34 0.93 16 14 C -0.11 -1.63 4.27 -29.27 -0.13 -1.75 16 15 C -0.09 -1.11 5.13 -29.69 -0.15 -1.26 16 16 C -0.16 -1.80 9.28 -36.27 -0.34 -2.14 16 17 C -0.15 -1.68 8.55 -36.13 -0.31 -1.98 16 18 C -0.11 -1.24 5.42 -27.98 -0.15 -1.39 16 19 C -0.11 -1.43 5.60 -25.86 -0.14 -1.58 16 20 C -0.11 -1.73 5.19 -25.27 -0.13 -1.86 16 21 H 0.27 7.42 8.31 -40.82 -0.34 7.09 16 22 H 0.37 7.99 5.02 -40.82 -0.20 7.79 16 23 H 0.06 0.93 6.99 -51.93 -0.36 0.57 16 24 H 0.06 1.00 7.71 -51.93 -0.40 0.60 16 25 H 0.07 0.83 5.63 -51.93 -0.29 0.54 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.11 1.10 8.06 -52.49 -0.42 0.68 16 28 H 0.11 1.03 8.06 -52.49 -0.42 0.61 16 29 H 0.08 0.96 3.56 -51.92 -0.18 0.77 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.99 6.28 -51.93 -0.33 0.67 16 34 H 0.09 1.66 6.47 -51.93 -0.34 1.32 16 LS Contribution 262.85 15.07 3.96 3.96 Total: -1.00 -31.46 262.85 -6.36 -37.82 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -4.54 Total: 9.77 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -1.87 Total: -11.20 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.72 Total: -39.61 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: 0.08 Total: -15.62 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.71 Total: 14.88 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.46 -6.36 -37.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719059399.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.401 kcal (2) G-P(sol) polarization free energy of solvation -31.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds