Wall clock time and date at job start Mon Mar 30 2020 02:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 119.99919 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00147 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00098 * 3 2 1 6 6 H 1.48504 * 109.46913 * 329.99897 * 3 2 1 7 7 C 1.38955 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99776 * 0.02562 * 7 2 1 9 9 N 1.37090 * 119.99992 * 179.97438 * 7 2 1 10 10 C 1.34784 * 119.99714 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00111 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99627 * 180.02562 * 10 9 7 13 13 H 1.09002 * 109.26559 * 300.49433 * 12 10 9 14 14 C 1.51384 * 109.27290 * 59.99254 * 12 10 9 15 15 C 1.49510 * 117.52183 * 194.07371 * 14 12 10 16 16 C 1.50520 * 113.04245 * 280.28150 * 15 14 12 17 17 C 1.31662 * 116.92363 * 84.57453 * 16 15 14 18 18 C 1.50807 * 118.08608 * 359.71887 * 17 16 15 19 19 C 1.52714 * 108.95869 * 255.14732 * 18 17 16 20 20 C 1.53852 * 109.26449 * 181.03563 * 12 10 9 21 21 H 0.97001 * 119.99781 * 359.97438 * 1 2 3 22 22 H 0.96999 * 120.00238 * 359.97438 * 9 7 2 23 23 H 1.09004 * 107.83662 * 316.11079 * 14 12 10 24 24 H 1.09004 * 107.83340 * 72.03913 * 14 12 10 25 25 H 1.08997 * 108.76833 * 41.20271 * 15 14 12 26 26 H 1.09001 * 108.76697 * 159.36262 * 15 14 12 27 27 H 1.07995 * 121.53729 * 264.58748 * 16 15 14 28 28 H 1.07994 * 120.95582 * 179.70685 * 17 16 15 29 29 H 1.09009 * 109.55363 * 14.98637 * 18 17 16 30 30 H 1.08991 * 109.55532 * 135.19628 * 18 17 16 31 31 H 1.08997 * 109.62276 * 177.54254 * 19 18 17 32 32 H 1.09002 * 109.61985 * 297.90605 * 19 18 17 33 33 H 1.09000 * 109.80182 * 253.41208 * 20 12 10 34 34 H 1.08998 * 109.80175 * 14.28720 * 20 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 1.4001 5 1 3.5457 1.4402 -0.7001 6 1 1.4455 2.6527 -0.7001 7 6 2.0090 -1.2034 0.0005 8 1 1.4690 -2.1387 0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3706 0.0000 11 8 3.4473 -3.4210 0.0009 12 6 5.5607 -2.3705 0.0000 13 1 5.9203 -1.8483 -0.8866 14 6 6.0604 -1.6558 1.2375 15 6 7.5024 -1.2627 1.2734 16 6 8.4158 -2.4049 1.6291 17 6 8.7919 -3.1959 0.6461 18 6 8.2771 -2.8998 -0.7401 19 6 7.1892 -3.9121 -1.0921 20 6 6.0684 -3.8226 -0.0262 21 1 -0.4850 0.8401 0.0004 22 1 3.8649 -0.3633 -0.0011 23 1 5.4646 -0.7518 1.3644 24 1 5.8685 -2.3002 2.0955 25 1 7.7858 -0.8791 0.2932 26 1 7.6312 -0.4685 2.0088 27 1 8.7471 -2.5683 2.6439 28 1 9.4503 -4.0326 0.8272 29 1 7.8609 -1.8927 -0.7673 30 1 9.0946 -2.9762 -1.4569 31 1 6.7788 -3.6814 -2.0751 32 1 7.6124 -4.9166 -1.0988 33 1 6.4666 -4.0923 0.9519 34 1 5.2521 -4.4944 -0.2915 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719059399.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:41 Heat of formation + Delta-G solvation = -50.226716 kcal Electronic energy + Delta-G solvation = -15667.886229 eV Core-core repulsion = 13178.761985 eV Total energy + Delta-G solvation = -2489.124243 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.07223 -39.01048 -36.12778 -34.22586 -33.93911 -33.43410 -28.30512 -27.39633 -25.94834 -23.07725 -22.06177 -21.06769 -20.11894 -18.80431 -18.04069 -16.99184 -16.33727 -15.96870 -15.74560 -15.42576 -14.93219 -14.72249 -14.43346 -14.15205 -13.78348 -13.53060 -13.00299 -12.78115 -12.45943 -12.29046 -12.09762 -12.01280 -11.68864 -11.63247 -11.52375 -11.23746 -10.82886 -10.43361 -10.27831 -9.67405 -8.44320 -6.05313 1.27356 1.32347 1.41600 1.45764 1.91234 2.20166 2.90244 3.11135 3.73087 3.83215 4.05049 4.16675 4.21018 4.30193 4.47684 4.51974 4.61290 4.71332 4.84098 4.92555 5.01978 5.06288 5.18077 5.21586 5.33329 5.40241 5.45355 5.53212 5.56098 5.90763 5.92958 6.13556 6.55222 6.84432 7.36226 7.92417 8.73384 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.038746 B = 0.007879 C = 0.007051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.488160 B = 3552.840511 C = 3970.232292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.959 3.041 4 H -0.254 1.254 5 H -0.232 1.232 6 H -0.271 1.271 7 C -0.333 4.333 8 H 0.055 0.945 9 N -0.587 5.587 10 C 0.451 3.549 11 O -0.625 6.625 12 C -0.084 4.084 13 H 0.106 0.894 14 C -0.103 4.103 15 C -0.090 4.090 16 C -0.169 4.169 17 C -0.154 4.154 18 C -0.109 4.109 19 C -0.107 4.107 20 C -0.108 4.108 21 H 0.280 0.720 22 H 0.389 0.611 23 H 0.057 0.943 24 H 0.050 0.950 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.122 0.878 28 H 0.120 0.880 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.108 1.444 0.534 21.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.211 4.211 3 Si 0.779 3.221 4 H -0.179 1.179 5 H -0.156 1.156 6 H -0.196 1.196 7 C -0.462 4.462 8 H 0.073 0.927 9 N -0.227 5.227 10 C 0.239 3.761 11 O -0.511 6.511 12 C -0.105 4.105 13 H 0.124 0.876 14 C -0.142 4.142 15 C -0.127 4.127 16 C -0.187 4.187 17 C -0.172 4.172 18 C -0.146 4.146 19 C -0.144 4.144 20 C -0.145 4.145 21 H 0.090 0.910 22 H 0.225 0.775 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.104 0.896 26 H 0.099 0.901 27 H 0.140 0.860 28 H 0.138 0.862 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 20.484 0.873 0.535 20.510 hybrid contribution -0.638 0.619 0.125 0.898 sum 19.846 1.492 0.659 19.913 Atomic orbital electron populations 1.69801 1.08083 1.29309 1.50058 1.26107 0.96475 1.02629 0.95939 0.85444 0.79583 0.76901 0.80185 1.17872 1.15575 1.19609 1.19055 0.81575 0.94991 1.50576 0.92690 1.42071 1.05776 1.07613 1.67274 1.21098 0.91348 0.83059 0.80565 1.90497 1.71586 1.32938 1.56089 1.21098 0.88648 0.99626 1.01161 0.87604 1.20483 0.97510 0.99921 0.96244 1.20024 0.91567 0.97583 1.03485 1.23108 0.98974 0.97498 0.99151 1.23182 0.99748 0.99235 0.95034 1.21072 0.98041 1.00221 0.95230 1.21806 0.94925 1.00133 0.97554 1.22100 0.98079 0.93899 1.00461 0.91048 0.77544 0.92463 0.93076 0.89570 0.90083 0.86028 0.86234 0.89968 0.90083 0.91927 0.90898 0.91185 0.93113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.77 13.96 21.66 0.30 -56.46 16 2 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 3 Si 0.96 39.23 27.74 68.60 1.90 41.14 16 4 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 5 H -0.23 -8.08 6.52 99.48 0.65 -7.43 16 6 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 7 C -0.33 -19.98 10.16 84.04 0.85 -19.12 16 8 H 0.05 3.92 7.39 -2.91 -0.02 3.89 16 9 N -0.59 -28.76 4.82 -306.98 -1.48 -30.23 16 10 C 0.45 21.35 7.08 87.65 0.62 21.97 16 11 O -0.63 -36.06 14.76 -3.07 -0.05 -36.10 16 12 C -0.08 -2.76 2.07 -11.78 -0.02 -2.78 16 13 H 0.11 3.00 6.57 -2.39 -0.02 2.99 16 14 C -0.10 -2.85 4.27 28.95 0.12 -2.73 16 15 C -0.09 -1.79 5.13 28.67 0.15 -1.65 16 16 C -0.17 -3.17 9.28 24.97 0.23 -2.94 16 17 C -0.15 -2.79 8.55 25.06 0.21 -2.57 16 18 C -0.11 -2.01 5.42 29.79 0.16 -1.85 16 19 C -0.11 -2.45 5.60 31.16 0.17 -2.27 16 20 C -0.11 -3.34 5.19 31.54 0.16 -3.18 16 21 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 22 H 0.39 15.96 5.02 -92.71 -0.47 15.49 16 23 H 0.06 1.61 6.99 -2.39 -0.02 1.60 16 24 H 0.05 1.53 7.71 -2.38 -0.02 1.51 16 25 H 0.09 1.54 5.63 -2.39 -0.01 1.53 16 26 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.12 2.00 8.06 -2.91 -0.02 1.97 16 28 H 0.12 1.85 8.06 -2.91 -0.02 1.83 16 29 H 0.08 1.54 3.56 -2.38 -0.01 1.53 16 30 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.07 2.07 6.28 -2.39 -0.01 2.06 16 34 H 0.05 1.97 6.47 -2.39 -0.02 1.96 16 Total: -1.00 -73.57 262.85 4.39 -69.18 By element: Atomic # 1 Polarization: 29.29 SS G_CDS: 0.58 Total: 29.86 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: 3.13 Total: -17.38 kcal Atomic # 7 Polarization: -85.52 SS G_CDS: -1.18 Total: -86.70 kcal Atomic # 8 Polarization: -36.06 SS G_CDS: -0.05 Total: -36.10 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 1.90 Total: 41.14 kcal Total: -73.57 4.39 -69.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719059399.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.950 kcal (2) G-P(sol) polarization free energy of solvation -73.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds