Wall clock time and date at job start Mon Mar 30 2020 02:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86804 * 119.99691 * 2 1 4 4 H 1.48507 * 109.47040 * 269.99475 * 3 2 1 5 5 H 1.48498 * 109.47254 * 29.99730 * 3 2 1 6 6 H 1.48503 * 109.46950 * 149.99858 * 3 2 1 7 7 C 1.38949 * 120.00348 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00053 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99713 * 359.97438 * 7 2 1 10 10 C 1.34782 * 119.99867 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99969 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99882 * 179.97438 * 10 9 7 13 13 H 1.09010 * 109.25899 * 60.51077 * 12 10 9 14 14 C 1.51386 * 109.24054 * 301.02698 * 12 10 9 15 15 C 1.49512 * 117.51551 * 165.93593 * 14 12 10 16 16 C 1.50524 * 113.03797 * 79.72114 * 15 14 12 17 17 C 1.31666 * 116.92296 * 275.42488 * 16 15 14 18 18 C 1.50801 * 118.08639 * 0.27811 * 17 16 15 19 19 C 1.52711 * 108.95846 * 104.85658 * 18 17 16 20 20 C 1.53852 * 109.26335 * 179.97438 * 12 10 9 21 21 H 0.97000 * 120.00370 * 0.02562 * 1 2 3 22 22 H 0.96997 * 120.00457 * 0.02562 * 9 7 2 23 23 H 1.08989 * 107.83422 * 287.97325 * 14 12 10 24 24 H 1.09001 * 107.83000 * 43.94845 * 14 12 10 25 25 H 1.09002 * 108.76244 * 200.63490 * 15 14 12 26 26 H 1.08992 * 108.77285 * 318.91314 * 15 14 12 27 27 H 1.07994 * 121.53552 * 95.45295 * 16 15 14 28 28 H 1.07998 * 120.95327 * 180.25552 * 17 16 15 29 29 H 1.09001 * 109.55928 * 345.01045 * 18 17 16 30 30 H 1.08996 * 109.55668 * 224.69656 * 18 17 16 31 31 H 1.08998 * 109.62337 * 182.45979 * 19 18 17 32 32 H 1.09000 * 109.62206 * 61.90734 * 19 18 17 33 33 H 1.08995 * 109.80373 * 106.55244 * 20 12 10 34 34 H 1.08999 * 109.85820 * 345.70727 * 20 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0890 -1.2032 0.0010 9 7 1.3235 -2.3906 0.0016 10 6 1.9974 -3.5578 0.0026 11 8 3.2103 -3.5578 0.0031 12 6 1.2439 -4.8629 0.0044 13 1 0.6251 -4.9220 -0.8911 14 6 0.3570 -4.9252 1.2296 15 6 -0.7051 -5.9771 1.2607 16 6 -0.1779 -7.3354 1.6387 17 6 0.3336 -8.0669 0.6707 18 6 0.3551 -7.4876 -0.7214 19 6 1.7808 -7.0553 -1.0569 20 6 2.2480 -6.0286 0.0047 21 1 -0.4851 0.8400 -0.0004 22 1 0.3535 -2.3907 0.0016 23 1 0.9980 -5.0722 2.0987 24 1 -0.1303 -3.9563 1.3385 25 1 -1.4680 -5.6839 1.9819 26 1 -1.1629 -6.0426 0.2738 27 1 -0.2178 -7.6936 2.6567 28 1 0.7268 -9.0532 0.8682 29 1 -0.3085 -6.6241 -0.7676 30 1 0.0251 -8.2420 -1.4356 31 1 1.8008 -6.5948 -2.0446 32 1 2.4398 -7.9234 -1.0415 33 1 2.2683 -6.4982 0.9881 34 1 3.2421 -5.6611 -0.2495 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719059400.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:44 Heat of formation + Delta-G solvation = -36.482864 kcal Electronic energy + Delta-G solvation = -15597.675484 eV Core-core repulsion = 13109.147219 eV Total energy + Delta-G solvation = -2488.528265 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.41171 -37.37936 -34.02236 -32.76007 -32.68235 -31.03166 -26.91197 -25.91832 -24.39225 -21.76936 -20.79714 -18.90159 -17.98253 -17.65974 -16.42060 -15.22586 -14.75456 -14.65958 -14.10329 -13.84166 -13.50031 -13.22917 -12.96804 -12.30303 -12.04982 -11.73452 -11.55135 -11.12082 -11.02174 -10.88818 -10.60067 -10.40619 -10.32815 -10.15107 -9.94286 -9.68430 -9.48082 -8.81995 -8.24380 -7.93898 -6.39480 -3.80132 2.37222 3.19085 3.27504 3.33628 3.93349 4.19780 4.85381 4.96105 5.10230 5.21684 5.24822 5.35167 5.45392 5.56051 5.68203 5.73225 5.81854 5.91735 6.08275 6.11963 6.18684 6.24164 6.39385 6.44636 6.54432 6.65277 6.80685 6.84265 6.92777 7.05327 7.57280 8.09304 8.64249 9.20313 9.58603 10.10132 10.78264 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.048385 B = 0.006779 C = 0.006295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.550063 B = 4129.440174 C = 4447.103203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.301 4.301 8 H 0.102 0.898 9 N -0.562 5.562 10 C 0.445 3.555 11 O -0.595 6.595 12 C -0.093 4.093 13 H 0.080 0.920 14 C -0.108 4.108 15 C -0.092 4.092 16 C -0.160 4.160 17 C -0.155 4.155 18 C -0.110 4.110 19 C -0.112 4.112 20 C -0.109 4.109 21 H 0.271 0.729 22 H 0.393 0.607 23 H 0.059 0.941 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.110 0.890 28 H 0.105 0.895 29 H 0.084 0.916 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.374 -12.165 0.649 12.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.197 5.197 10 C 0.231 3.769 11 O -0.480 6.480 12 C -0.114 4.114 13 H 0.098 0.902 14 C -0.146 4.146 15 C -0.129 4.129 16 C -0.178 4.178 17 C -0.173 4.173 18 C -0.147 4.147 19 C -0.150 4.150 20 C -0.147 4.147 21 H 0.081 0.919 22 H 0.226 0.774 23 H 0.077 0.923 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.128 0.872 28 H 0.123 0.877 29 H 0.102 0.898 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.705 -11.960 0.657 12.279 hybrid contribution -0.252 0.830 0.100 0.873 sum -2.956 -11.130 0.757 11.541 Atomic orbital electron populations 1.69611 1.05922 1.28112 1.50685 1.25254 0.95619 0.99686 0.97362 0.85874 0.79250 0.80884 0.78377 1.20417 1.20934 1.19441 1.19734 0.93380 0.82417 1.47511 0.87991 1.41902 1.09206 1.04632 1.63982 1.19941 0.88173 0.85098 0.83701 1.90471 1.14146 1.87051 1.56353 1.21027 0.96997 0.94643 0.98767 0.90189 1.20493 0.97078 0.98805 0.98189 1.20071 0.98060 0.92785 1.02010 1.23016 1.00383 0.96009 0.98359 1.22998 0.99878 0.99024 0.95416 1.21076 0.98409 1.00871 0.94319 1.21847 0.95295 0.98731 0.99123 1.22132 1.00045 0.93790 0.98688 0.91897 0.77364 0.92255 0.91565 0.91786 0.90814 0.87245 0.87682 0.89769 0.92219 0.91888 0.92384 0.91924 0.89568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.76 13.05 55.50 0.72 -24.03 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.25 29.55 -169.99 -5.02 16.23 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.30 -8.52 9.68 -14.93 -0.14 -8.66 16 8 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 9 N -0.56 -14.50 5.01 -10.96 -0.05 -14.56 16 10 C 0.44 10.75 7.10 -10.98 -0.08 10.68 16 11 O -0.59 -16.47 14.76 5.55 0.08 -16.38 16 12 C -0.09 -1.69 2.07 -92.14 -0.19 -1.88 16 13 H 0.08 1.37 6.57 -51.92 -0.34 1.03 16 14 C -0.11 -1.75 4.27 -29.27 -0.13 -1.88 16 15 C -0.09 -1.21 5.14 -29.69 -0.15 -1.36 16 16 C -0.16 -1.94 9.28 -36.26 -0.34 -2.28 16 17 C -0.16 -1.83 8.55 -36.13 -0.31 -2.14 16 18 C -0.11 -1.33 5.41 -27.98 -0.15 -1.48 16 19 C -0.11 -1.52 5.60 -25.88 -0.14 -1.67 16 20 C -0.11 -1.83 5.19 -25.29 -0.13 -1.96 16 21 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 22 H 0.39 9.71 7.08 -40.82 -0.29 9.42 16 23 H 0.06 1.01 7.72 -51.93 -0.40 0.60 16 24 H 0.07 1.16 6.92 -51.93 -0.36 0.80 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.07 0.93 5.62 -51.93 -0.29 0.64 16 27 H 0.11 1.19 8.06 -52.49 -0.42 0.76 16 28 H 0.11 1.10 8.06 -52.49 -0.42 0.68 16 29 H 0.08 1.07 3.56 -51.93 -0.18 0.88 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 1.02 6.29 -51.93 -0.33 0.69 16 34 H 0.09 1.69 6.46 -51.93 -0.34 1.36 16 LS Contribution 265.85 15.07 4.01 4.01 Total: -1.00 -30.26 265.85 -6.70 -36.96 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -4.58 Total: 9.91 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: -1.86 Total: -12.13 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.67 Total: -38.59 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: 0.08 Total: -16.38 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.26 -6.70 -36.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719059400.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.477 kcal (2) G-P(sol) polarization free energy of solvation -30.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds