Wall clock time and date at job start Mon Mar 30 2020 02:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86804 * 119.99691 * 2 1 4 4 H 1.48507 * 109.47040 * 269.99475 * 3 2 1 5 5 H 1.48498 * 109.47254 * 29.99730 * 3 2 1 6 6 H 1.48503 * 109.46950 * 149.99858 * 3 2 1 7 7 C 1.38949 * 120.00348 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00053 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99713 * 359.97438 * 7 2 1 10 10 C 1.34782 * 119.99867 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99969 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99882 * 179.97438 * 10 9 7 13 13 H 1.09010 * 109.25899 * 60.51077 * 12 10 9 14 14 C 1.51386 * 109.24054 * 301.02698 * 12 10 9 15 15 C 1.49512 * 117.51551 * 165.93593 * 14 12 10 16 16 C 1.50524 * 113.03797 * 79.72114 * 15 14 12 17 17 C 1.31666 * 116.92296 * 275.42488 * 16 15 14 18 18 C 1.50801 * 118.08639 * 0.27811 * 17 16 15 19 19 C 1.52711 * 108.95846 * 104.85658 * 18 17 16 20 20 C 1.53852 * 109.26335 * 179.97438 * 12 10 9 21 21 H 0.97000 * 120.00370 * 0.02562 * 1 2 3 22 22 H 0.96997 * 120.00457 * 0.02562 * 9 7 2 23 23 H 1.08989 * 107.83422 * 287.97325 * 14 12 10 24 24 H 1.09001 * 107.83000 * 43.94845 * 14 12 10 25 25 H 1.09002 * 108.76244 * 200.63490 * 15 14 12 26 26 H 1.08992 * 108.77285 * 318.91314 * 15 14 12 27 27 H 1.07994 * 121.53552 * 95.45295 * 16 15 14 28 28 H 1.07998 * 120.95327 * 180.25552 * 17 16 15 29 29 H 1.09001 * 109.55928 * 345.01045 * 18 17 16 30 30 H 1.08996 * 109.55668 * 224.69656 * 18 17 16 31 31 H 1.08998 * 109.62337 * 182.45979 * 19 18 17 32 32 H 1.09000 * 109.62206 * 61.90734 * 19 18 17 33 33 H 1.08995 * 109.80373 * 106.55244 * 20 12 10 34 34 H 1.08999 * 109.85820 * 345.70727 * 20 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0890 -1.2032 0.0010 9 7 1.3235 -2.3906 0.0016 10 6 1.9974 -3.5578 0.0026 11 8 3.2103 -3.5578 0.0031 12 6 1.2439 -4.8629 0.0044 13 1 0.6251 -4.9220 -0.8911 14 6 0.3570 -4.9252 1.2296 15 6 -0.7051 -5.9771 1.2607 16 6 -0.1779 -7.3354 1.6387 17 6 0.3336 -8.0669 0.6707 18 6 0.3551 -7.4876 -0.7214 19 6 1.7808 -7.0553 -1.0569 20 6 2.2480 -6.0286 0.0047 21 1 -0.4851 0.8400 -0.0004 22 1 0.3535 -2.3907 0.0016 23 1 0.9980 -5.0722 2.0987 24 1 -0.1303 -3.9563 1.3385 25 1 -1.4680 -5.6839 1.9819 26 1 -1.1629 -6.0426 0.2738 27 1 -0.2178 -7.6936 2.6567 28 1 0.7268 -9.0532 0.8682 29 1 -0.3085 -6.6241 -0.7676 30 1 0.0251 -8.2420 -1.4356 31 1 1.8008 -6.5948 -2.0446 32 1 2.4398 -7.9234 -1.0415 33 1 2.2683 -6.4982 0.9881 34 1 3.2421 -5.6611 -0.2495 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719059400.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:44 Heat of formation + Delta-G solvation = -54.989007 kcal Electronic energy + Delta-G solvation = -15598.477970 eV Core-core repulsion = 13109.147219 eV Total energy + Delta-G solvation = -2489.330752 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.96526 -38.94018 -36.06808 -34.11380 -33.92361 -33.01163 -28.22411 -27.36963 -26.07026 -23.12145 -22.12240 -20.62452 -19.91373 -18.79729 -18.07029 -16.82384 -16.26383 -15.94547 -15.90503 -15.46891 -14.99026 -14.64869 -14.33154 -13.74990 -13.54495 -13.47987 -12.94425 -12.78805 -12.46151 -12.27840 -12.17195 -12.04625 -11.68761 -11.61512 -11.51560 -11.22049 -10.82855 -10.33708 -10.03876 -9.67379 -8.48585 -5.97974 1.36235 1.40076 1.45144 1.53215 2.02321 2.28778 3.15627 3.22151 3.74953 3.88486 4.12429 4.19387 4.21891 4.34458 4.48447 4.58101 4.60865 4.73987 4.84509 4.93628 5.02942 5.06218 5.19356 5.24032 5.32837 5.38424 5.41751 5.49152 5.54575 5.89091 5.98705 6.13503 6.57094 7.09823 7.53961 8.09181 8.68800 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.048385 B = 0.006779 C = 0.006295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.550063 B = 4129.440174 C = 4447.103203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.012 4.012 3 Si 0.994 3.006 4 H -0.270 1.270 5 H -0.269 1.269 6 H -0.274 1.274 7 C -0.339 4.339 8 H 0.078 0.922 9 N -0.569 5.569 10 C 0.438 3.562 11 O -0.635 6.635 12 C -0.081 4.081 13 H 0.096 0.904 14 C -0.098 4.098 15 C -0.089 4.089 16 C -0.169 4.169 17 C -0.152 4.152 18 C -0.110 4.110 19 C -0.106 4.106 20 C -0.105 4.105 21 H 0.279 0.721 22 H 0.396 0.604 23 H 0.048 0.952 24 H 0.048 0.952 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.123 0.877 28 H 0.123 0.877 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.381 -13.116 0.571 13.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.211 4.211 3 Si 0.817 3.183 4 H -0.195 1.195 5 H -0.193 1.193 6 H -0.198 1.198 7 C -0.469 4.469 8 H 0.096 0.904 9 N -0.205 5.205 10 C 0.226 3.774 11 O -0.523 6.523 12 C -0.102 4.102 13 H 0.114 0.886 14 C -0.136 4.136 15 C -0.125 4.125 16 C -0.187 4.187 17 C -0.170 4.170 18 C -0.147 4.147 19 C -0.143 4.143 20 C -0.143 4.143 21 H 0.088 0.912 22 H 0.231 0.769 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.094 0.906 26 H 0.101 0.899 27 H 0.141 0.859 28 H 0.141 0.859 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.743 -12.924 0.577 13.467 hybrid contribution 0.078 1.109 0.117 1.118 sum -3.664 -11.815 0.694 12.389 Atomic orbital electron populations 1.69671 1.06847 1.29391 1.50065 1.26060 0.96563 1.02433 0.96088 0.84923 0.77866 0.76772 0.78737 1.19495 1.19349 1.19840 1.19713 0.92719 0.84211 1.50230 0.90433 1.41967 1.09294 1.04725 1.64469 1.21031 0.88080 0.86576 0.81696 1.90440 1.16226 1.87976 1.57686 1.21012 0.97192 0.91539 1.00498 0.88642 1.20419 0.97275 0.99442 0.96465 1.20006 0.97001 0.92466 1.03073 1.23099 1.00958 0.95355 0.99311 1.23187 0.99147 0.99716 0.94952 1.21070 0.96957 1.01336 0.95292 1.21797 0.96749 0.98183 0.97591 1.22074 0.97865 0.94047 1.00321 0.91192 0.76949 0.93343 0.93284 0.90589 0.89947 0.85864 0.85869 0.90404 0.90006 0.92096 0.90641 0.91327 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.27 13.05 21.66 0.28 -49.99 16 2 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 3 Si 0.99 43.50 29.55 68.60 2.03 45.53 16 4 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 7 C -0.34 -19.80 9.68 84.04 0.81 -18.99 16 8 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 9 N -0.57 -30.29 5.01 -306.98 -1.54 -31.82 16 10 C 0.44 21.87 7.10 87.66 0.62 22.49 16 11 O -0.64 -36.71 14.76 -3.06 -0.05 -36.75 16 12 C -0.08 -2.95 2.07 -11.78 -0.02 -2.98 16 13 H 0.10 3.19 6.57 -2.38 -0.02 3.17 16 14 C -0.10 -3.14 4.27 28.95 0.12 -3.02 16 15 C -0.09 -2.14 5.14 28.68 0.15 -2.00 16 16 C -0.17 -3.63 9.28 24.97 0.23 -3.40 16 17 C -0.15 -3.08 8.55 25.06 0.21 -2.87 16 18 C -0.11 -2.32 5.41 29.78 0.16 -2.16 16 19 C -0.11 -2.64 5.60 31.14 0.17 -2.47 16 20 C -0.11 -3.49 5.19 31.53 0.16 -3.33 16 21 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 22 H 0.40 20.10 7.08 -92.71 -0.66 19.45 16 23 H 0.05 1.63 7.72 -2.39 -0.02 1.62 16 24 H 0.05 1.73 6.92 -2.39 -0.02 1.71 16 25 H 0.08 1.67 8.14 -2.39 -0.02 1.66 16 26 H 0.08 1.87 5.62 -2.39 -0.01 1.86 16 27 H 0.12 2.30 8.06 -2.91 -0.02 2.28 16 28 H 0.12 2.08 8.06 -2.91 -0.02 2.06 16 29 H 0.08 1.75 3.56 -2.39 -0.01 1.74 16 30 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.07 2.17 6.29 -2.39 -0.02 2.15 16 34 H 0.05 2.13 6.46 -2.39 -0.02 2.12 16 Total: -1.00 -66.02 265.85 4.27 -61.75 By element: Atomic # 1 Polarization: 29.71 SS G_CDS: 0.45 Total: 30.16 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: 3.09 Total: -18.87 kcal Atomic # 7 Polarization: -80.56 SS G_CDS: -1.26 Total: -81.81 kcal Atomic # 8 Polarization: -36.71 SS G_CDS: -0.05 Total: -36.75 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -66.02 4.27 -61.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719059400.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.761 kcal (2) G-P(sol) polarization free energy of solvation -66.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds