Wall clock time and date at job start Mon Mar 30 2020 03:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00227 * 2 1 4 4 H 1.48495 * 109.47175 * 240.00715 * 3 2 1 5 5 H 1.48504 * 109.47026 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47152 * 120.00069 * 3 2 1 7 7 C 1.37880 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00018 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99944 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47112 * 179.97438 * 9 7 2 11 11 C 1.46892 * 111.00083 * 180.02562 * 10 9 7 12 12 H 1.09523 * 110.73542 * 330.11656 * 11 10 9 13 13 C 1.59679 * 112.26080 * 204.99836 * 11 10 9 14 14 H 1.09188 * 117.39813 * 60.02545 * 13 11 10 15 15 C 1.57645 * 105.89622 * 192.72378 * 13 11 10 16 16 C 1.55630 * 108.34103 * 64.40334 * 15 13 11 17 17 H 1.09697 * 113.96498 * 129.95675 * 16 15 13 18 18 C 1.56200 * 108.93832 * 258.77725 * 16 15 13 19 19 O 1.48775 * 107.83820 * 97.96646 * 18 16 15 20 20 C 1.40277 * 91.63689 * 329.31479 * 19 18 16 21 21 H 1.11906 * 78.15368 * 339.79006 * 20 19 18 22 22 C 1.58057 * 104.75307 * 64.39492 * 20 19 18 23 23 H 1.08948 * 120.39710 * 54.18324 * 22 20 19 24 24 C 1.56175 * 101.37431 * 189.11470 * 22 20 19 25 25 H 0.97005 * 119.99987 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.46799 * 60.00151 * 9 7 2 27 27 H 1.08992 * 109.47331 * 300.00237 * 9 7 2 28 28 H 1.00899 * 110.99947 * 56.04515 * 10 9 7 29 29 H 1.08694 * 109.82466 * 304.15779 * 15 13 11 30 30 H 1.08971 * 109.37738 * 183.59846 * 15 13 11 31 31 H 1.09442 * 109.45412 * 215.25698 * 18 16 15 32 32 H 1.08438 * 111.82265 * 336.52725 * 18 16 15 33 33 H 1.08812 * 112.13688 * 278.27159 * 24 22 20 34 34 H 1.09317 * 111.42660 * 153.57225 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0018 11 6 1.5053 -4.9070 -0.0024 12 1 0.5400 -4.8249 0.5084 13 6 2.3946 -6.0777 0.6208 14 1 2.7227 -5.9628 1.6559 15 6 1.6600 -7.4222 0.2496 16 6 1.6778 -7.5787 -1.2987 17 1 2.0322 -8.5579 -1.6435 18 6 0.2821 -7.1666 -1.8660 19 8 0.3808 -5.7606 -2.3422 20 6 1.3466 -5.4571 -1.3712 21 1 0.8666 -6.3713 -0.9399 22 6 2.5904 -6.3576 -1.7455 23 1 3.0171 -6.3196 -2.7472 24 6 3.5098 -6.1456 -0.5010 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8904 27 1 0.6247 -2.5571 0.8896 28 1 2.8411 -3.5490 0.7791 29 1 0.6348 -7.3938 0.6097 30 1 2.1878 -8.2601 0.7044 31 1 0.0366 -7.7987 -2.7250 32 1 -0.4992 -7.2571 -1.1195 33 1 4.0812 -5.2219 -0.5659 34 1 4.1736 -7.0000 -0.3446 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872222033.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:50 Heat of formation + Delta-G solvation = 161.128546 kcal Electronic energy + Delta-G solvation = -15869.434239 eV Core-core repulsion = 13389.475047 eV Total energy + Delta-G solvation = -2479.959192 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.50206 -36.43054 -34.40942 -32.26416 -29.88952 -28.20471 -27.45442 -25.59660 -24.56449 -21.69568 -20.14314 -19.80964 -18.97773 -16.63546 -16.22143 -15.77670 -14.95888 -14.73678 -14.40924 -13.86654 -13.65507 -13.24713 -12.36457 -11.96922 -11.90614 -11.41354 -11.30936 -11.11934 -10.96806 -10.79661 -10.70230 -10.66599 -10.52909 -10.23358 -9.81523 -9.33469 -9.07846 -8.42135 -7.87550 -7.26900 -5.97161 -3.99161 3.12784 3.37438 3.41193 3.44422 4.14034 4.31407 4.47854 4.53799 4.73942 4.87352 4.96772 5.16265 5.21303 5.36149 5.38709 5.49112 5.55344 5.64748 5.75425 5.79637 5.81671 5.97262 6.03588 6.21260 6.29606 6.39403 6.47674 7.14787 7.36396 7.46981 7.83617 8.19070 8.45233 8.65307 9.09567 9.65122 11.14016 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.047989 B = 0.006795 C = 0.006444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.327755 B = 4119.898234 C = 4344.043337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.513 4.513 8 H 0.062 0.938 9 C 0.195 3.805 10 N -0.671 5.671 11 C 0.157 3.843 12 H 0.048 0.952 13 C -0.112 4.112 14 H 0.117 0.883 15 C -0.123 4.123 16 C -0.129 4.129 17 H 0.095 0.905 18 C 0.023 3.977 19 O -0.310 6.310 20 C -0.073 4.073 21 H 0.071 0.929 22 C -0.100 4.100 23 H 0.117 0.883 24 C -0.106 4.106 25 H 0.261 0.739 26 H 0.030 0.970 27 H -0.015 1.015 28 H 0.328 0.672 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.012 -16.308 0.887 16.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.552 4.552 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.301 5.301 11 C 0.046 3.954 12 H 0.066 0.934 13 C -0.130 4.130 14 H 0.135 0.865 15 C -0.161 4.161 16 C -0.147 4.147 17 H 0.113 0.887 18 C -0.054 4.054 19 O -0.228 6.228 20 C -0.131 4.131 21 H 0.088 0.912 22 C -0.119 4.119 23 H 0.135 0.865 24 C -0.143 4.143 25 H 0.071 0.929 26 H 0.049 0.951 27 H 0.003 0.997 28 H 0.145 0.855 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.747 -16.115 0.036 16.545 hybrid contribution -0.262 0.701 0.870 1.147 sum 3.485 -15.414 0.905 15.829 Atomic orbital electron populations 1.69964 1.06101 1.26830 1.50849 1.24993 0.94864 0.99341 0.95399 0.86538 0.79400 0.82694 0.78606 1.20142 1.21385 1.20303 1.21137 0.93462 0.90198 1.50386 0.91955 1.19605 0.90577 0.87176 0.95812 1.60881 1.20781 1.00405 1.48066 1.21795 0.95728 0.90495 0.87408 0.93406 1.25132 0.97030 0.92388 0.98484 0.86466 1.23149 1.00794 0.97867 0.94312 1.25048 0.94514 0.99904 0.95274 0.88718 1.24643 0.96349 0.85537 0.98847 1.90058 1.60004 1.22520 1.50192 1.24614 0.88045 1.08170 0.92242 0.91205 1.24955 0.94757 0.93541 0.98632 0.86479 1.23308 0.96133 1.01975 0.92873 0.92898 0.95150 0.99692 0.85471 0.91820 0.91029 0.90587 0.90987 0.89275 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.63 13.29 55.43 0.74 -26.90 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.51 -14.92 9.32 -34.44 -0.32 -15.24 16 8 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 9 C 0.19 5.31 5.29 -4.98 -0.03 5.28 16 10 N -0.67 -14.65 5.69 -106.22 -0.60 -15.26 16 11 C 0.16 2.90 2.97 -66.22 -0.20 2.71 16 12 H 0.05 0.94 7.84 -51.63 -0.41 0.54 16 13 C -0.11 -1.48 5.25 -81.39 -0.43 -1.91 16 14 H 0.12 1.34 8.16 -51.82 -0.42 0.92 16 15 C -0.12 -1.39 5.43 -22.79 -0.12 -1.51 16 16 C -0.13 -1.54 4.56 -84.25 -0.38 -1.93 16 17 H 0.09 0.91 8.20 -51.53 -0.42 0.48 16 18 C 0.02 0.31 6.73 37.74 0.25 0.57 16 19 O -0.31 -6.06 12.44 -33.59 -0.42 -6.48 16 20 C -0.07 -1.36 6.22 -27.34 -0.17 -1.53 16 21 H 0.07 1.10 0.64 -214.36 -0.14 0.96 16 22 C -0.10 -1.49 6.07 -82.89 -0.50 -1.99 16 23 H 0.12 1.70 8.14 -51.96 -0.42 1.28 16 24 C -0.11 -1.41 6.17 -22.09 -0.14 -1.55 16 25 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 26 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 27 H -0.01 -0.42 8.08 -51.93 -0.42 -0.84 16 28 H 0.33 6.56 8.51 -39.29 -0.33 6.23 16 29 H 0.06 0.71 7.20 -52.10 -0.38 0.33 16 30 H 0.07 0.65 8.14 -51.95 -0.42 0.23 16 31 H 0.08 0.88 8.18 -51.68 -0.42 0.45 16 32 H 0.07 0.90 7.30 -52.24 -0.38 0.52 16 33 H 0.09 1.34 7.62 -52.03 -0.40 0.94 16 34 H 0.06 0.65 8.17 -51.75 -0.42 0.23 16 LS Contribution 266.17 15.07 4.01 4.01 Total: -1.00 -32.46 266.17 -8.38 -40.84 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -4.95 Total: 2.23 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: -2.13 Total: -15.57 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: 0.13 Total: -42.16 kcal Atomic # 8 Polarization: -6.06 SS G_CDS: -0.42 Total: -6.48 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -32.46 -8.38 -40.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872222033.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.969 kcal (2) G-P(sol) polarization free energy of solvation -32.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds