Wall clock time and date at job start Mon Mar 30 2020 03:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 119.99899 * 2 1 4 4 H 1.48505 * 109.46789 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46773 * 299.99522 * 3 2 1 6 6 H 1.48494 * 109.47253 * 59.99911 * 3 2 1 7 7 C 1.37871 * 119.99765 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99827 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00286 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47130 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99843 * 179.97438 * 10 9 7 12 12 H 1.08858 * 109.17834 * 325.22397 * 11 10 9 13 13 C 1.56187 * 109.39649 * 85.41603 * 11 10 9 14 14 H 1.09950 * 113.94375 * 351.42603 * 13 11 10 15 15 O 1.46898 * 108.62720 * 223.78840 * 13 11 10 16 16 C 1.48730 * 109.07621 * 259.34732 * 15 13 11 17 17 C 1.49707 * 89.61169 * 35.16474 * 16 15 13 18 18 H 1.08775 * 78.71621 * 28.88701 * 17 16 15 19 19 C 1.45753 * 148.10077 * 94.57938 * 17 16 15 20 20 C 1.57794 * 109.51724 * 204.99877 * 11 10 9 21 21 H 1.09674 * 116.85028 * 42.04935 * 20 11 10 22 22 C 1.58165 * 97.03363 * 276.39259 * 20 11 10 23 23 C 1.56252 * 98.20417 * 307.92718 * 22 20 11 24 24 H 1.09980 * 119.07432 * 190.00417 * 23 22 20 25 25 H 0.97003 * 119.99912 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47056 * 59.99362 * 9 7 2 27 27 H 1.09001 * 109.46996 * 300.00321 * 9 7 2 28 28 H 1.00901 * 111.00271 * 56.04791 * 10 9 7 29 29 H 1.08042 * 112.68771 * 281.18374 * 16 15 13 30 30 H 1.08055 * 112.64628 * 149.10023 * 16 15 13 31 31 H 1.09679 * 112.11525 * 350.48760 * 19 17 16 32 32 H 1.09684 * 112.10105 * 114.87814 * 19 17 16 33 33 H 1.09004 * 111.85396 * 65.74771 * 22 20 11 34 34 H 1.09201 * 111.45563 * 190.53878 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0018 11 6 1.5053 -4.9071 0.0024 12 1 0.5922 -4.8184 0.5884 13 6 1.1551 -5.3080 -1.4659 14 1 1.3476 -4.5151 -2.2030 15 8 -0.2227 -5.8163 -1.4977 16 6 -0.1918 -7.3030 -1.5262 17 6 1.0177 -7.2846 -0.6442 18 1 0.5179 -6.3679 -0.3391 19 6 1.5671 -7.3522 0.7041 20 6 2.4386 -6.0126 0.6322 21 1 3.0077 -5.7300 1.5261 22 6 3.2583 -6.3440 -0.6793 23 6 2.0513 -6.6013 -1.6376 24 1 2.2409 -7.0289 -2.6330 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5570 -0.8896 27 1 0.6240 -2.5567 0.8903 28 1 2.8399 -3.5484 0.7836 29 1 0.0256 -7.6965 -2.5086 30 1 -1.0467 -7.7464 -1.0361 31 1 0.7852 -7.3023 1.4716 32 1 2.1849 -8.2461 0.8537 33 1 3.8652 -5.4984 -1.0030 34 1 3.8724 -7.2379 -0.5512 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872222034.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:53 Heat of formation + Delta-G solvation = 102.960941 kcal Electronic energy + Delta-G solvation = -15928.821386 eV Core-core repulsion = 13446.339857 eV Total energy + Delta-G solvation = -2482.481528 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.16081 -37.44711 -36.07050 -34.31873 -31.05779 -29.75665 -28.86699 -27.65205 -25.84770 -23.53089 -21.34774 -21.19935 -20.04681 -18.57982 -17.54956 -16.92388 -16.77586 -16.12956 -15.90531 -15.65553 -14.70634 -14.64437 -14.33654 -13.81416 -13.42026 -13.09506 -12.81336 -12.69407 -12.55904 -12.43684 -12.16930 -11.89949 -11.85343 -11.55995 -11.18513 -11.02520 -10.73114 -10.67267 -9.43508 -9.19156 -8.26847 -6.40044 1.38425 1.39891 1.54062 2.35099 2.44332 2.52571 3.06072 3.16159 3.35177 3.58469 3.64703 3.83849 4.10779 4.19326 4.23673 4.44074 4.47596 4.60683 4.67522 4.86376 4.90860 4.98241 5.03183 5.09024 5.12591 5.19128 5.26121 5.36818 5.52575 5.54888 5.59740 5.95935 6.34953 6.65195 6.83434 7.31731 8.85392 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.047888 B = 0.006907 C = 0.006489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.563336 B = 4053.002152 C = 4313.857447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.003 4.003 3 Si 0.980 3.020 4 H -0.258 1.258 5 H -0.278 1.278 6 H -0.276 1.276 7 C -0.535 4.535 8 H 0.070 0.930 9 C 0.214 3.786 10 N -0.672 5.672 11 C 0.065 3.935 12 H 0.004 0.996 13 C 0.073 3.927 14 H 0.083 0.917 15 O -0.457 6.457 16 C 0.120 3.880 17 C -0.336 4.336 18 H 0.122 0.878 19 C -0.025 4.025 20 C -0.107 4.107 21 H 0.129 0.871 22 C -0.101 4.101 23 C -0.108 4.108 24 H 0.142 0.858 25 H 0.265 0.735 26 H -0.010 1.010 27 H -0.049 1.049 28 H 0.340 0.660 29 H 0.107 0.893 30 H 0.116 0.884 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.067 0.933 34 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.437 -16.566 -0.517 17.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.201 4.201 3 Si 0.803 3.197 4 H -0.182 1.182 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.574 4.574 8 H 0.088 0.912 9 C 0.086 3.914 10 N -0.303 5.303 11 C -0.046 4.046 12 H 0.022 0.978 13 C 0.017 3.983 14 H 0.101 0.899 15 O -0.380 6.380 16 C 0.047 3.953 17 C -0.354 4.354 18 H 0.138 0.862 19 C -0.062 4.062 20 C -0.126 4.126 21 H 0.146 0.854 22 C -0.138 4.138 23 C -0.126 4.126 24 H 0.160 0.840 25 H 0.074 0.926 26 H 0.008 0.992 27 H -0.031 1.031 28 H 0.158 0.842 29 H 0.125 0.875 30 H 0.134 0.866 31 H 0.084 0.916 32 H 0.112 0.888 33 H 0.086 0.914 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.152 -16.200 -1.183 17.041 hybrid contribution -0.710 1.425 0.831 1.796 sum 4.441 -14.776 -0.352 15.433 Atomic orbital electron populations 1.70142 1.08106 1.28044 1.51414 1.26079 0.95810 1.03819 0.94408 0.85182 0.78972 0.77729 0.77771 1.18207 1.20403 1.20179 1.21572 0.93951 0.91089 1.50744 0.91173 1.19175 0.90487 0.89295 0.92432 1.60481 1.20033 1.00675 1.49084 1.23812 0.94985 0.90934 0.94877 0.97802 1.25256 0.80833 0.96791 0.95454 0.89925 1.90012 1.29082 1.25135 1.93750 1.22598 0.96284 0.77574 0.98892 1.24304 0.97780 1.16870 0.96404 0.86231 1.20937 0.98224 0.96397 0.90648 1.25405 0.96344 0.92329 0.98491 0.85362 1.23323 0.95675 1.01951 0.92831 1.25521 0.94329 0.93266 0.99523 0.84007 0.92596 0.99187 1.03099 0.84199 0.87493 0.86639 0.91648 0.88792 0.91429 0.88313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.07 13.29 21.45 0.28 -58.78 16 2 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 3 Si 0.98 45.24 29.54 68.60 2.03 47.27 16 4 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.54 -31.58 9.32 25.60 0.24 -31.34 16 8 H 0.07 3.95 7.81 -2.91 -0.02 3.93 16 9 C 0.21 12.24 5.24 85.56 0.45 12.69 16 10 N -0.67 -30.05 6.13 -482.68 -2.96 -33.02 16 11 C 0.06 2.48 1.93 47.72 0.09 2.58 16 12 H 0.00 0.19 7.31 -2.46 -0.02 0.17 16 13 C 0.07 2.74 4.76 33.59 0.16 2.90 16 14 H 0.08 3.58 8.17 -1.88 -0.02 3.56 16 15 O -0.46 -17.39 10.68 -148.98 -1.59 -18.98 16 16 C 0.12 2.99 8.37 70.93 0.59 3.58 16 17 C -0.34 -8.53 5.60 -11.98 -0.07 -8.60 16 18 H 0.12 3.95 1.41 -169.94 -0.24 3.71 16 19 C -0.02 -0.55 6.46 30.92 0.20 -0.35 16 20 C -0.11 -2.88 5.01 -4.71 -0.02 -2.90 16 21 H 0.13 3.03 8.14 -2.03 -0.02 3.01 16 22 C -0.10 -2.44 6.31 33.57 0.21 -2.23 16 23 C -0.11 -2.84 5.52 -5.69 -0.03 -2.87 16 24 H 0.14 3.01 8.20 -1.86 -0.02 3.00 16 25 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 26 H -0.01 -0.64 8.05 -2.39 -0.02 -0.66 16 27 H -0.05 -3.04 8.05 -2.39 -0.02 -3.06 16 28 H 0.34 14.01 8.34 -89.69 -0.75 13.26 16 29 H 0.11 2.12 7.79 -2.89 -0.02 2.10 16 30 H 0.12 2.40 8.06 -2.88 -0.02 2.38 16 31 H 0.06 1.49 8.20 -2.03 -0.02 1.47 16 32 H 0.09 1.60 8.20 -2.02 -0.02 1.59 16 33 H 0.07 1.86 8.05 -2.38 -0.02 1.84 16 34 H 0.10 1.81 8.16 -2.28 -0.02 1.79 16 Total: -1.00 -71.09 267.18 0.16 -70.93 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 0.12 Total: 18.85 kcal Atomic # 6 Polarization: -28.55 SS G_CDS: 2.28 Total: -26.27 kcal Atomic # 7 Polarization: -89.12 SS G_CDS: -2.68 Total: -91.80 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -1.59 Total: -18.98 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -71.09 0.16 -70.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872222034.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.893 kcal (2) G-P(sol) polarization free energy of solvation -71.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds