Wall clock time and date at job start Mon Mar 30 2020 03:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52993 * 109.47340 * 238.82386 * 3 2 1 5 5 O 1.42910 * 109.57618 * 300.16124 * 4 3 2 6 6 C 1.53123 * 109.52792 * 180.02562 * 4 3 2 7 7 C 1.53037 * 109.27848 * 182.44034 * 6 4 3 8 8 N 1.46846 * 109.52367 * 59.18032 * 7 6 4 9 9 C 1.46898 * 111.00026 * 174.16006 * 8 7 6 10 10 C 1.50700 * 109.47432 * 64.88962 * 9 8 7 11 11 H 1.07998 * 119.99782 * 354.99210 * 10 9 8 12 12 C 1.37874 * 120.00241 * 174.71994 * 10 9 8 13 13 N 1.31514 * 119.99703 * 0.27681 * 12 10 9 14 14 Si 1.86802 * 119.99888 * 180.27176 * 12 10 9 15 15 H 1.48493 * 109.47366 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.46708 * 120.00319 * 14 12 10 17 17 H 1.48499 * 109.46908 * 239.99987 * 14 12 10 18 18 C 1.46852 * 111.19928 * 298.25506 * 8 7 6 19 19 C 1.53040 * 109.52362 * 61.73868 * 18 8 7 20 20 H 4.44654 * 5.63283 * 179.97438 * 4 1 2 21 21 H 1.09006 * 109.47173 * 118.82383 * 3 2 1 22 22 H 1.09005 * 109.47485 * 358.82409 * 3 2 1 23 23 H 0.96703 * 113.99704 * 59.83457 * 5 4 3 24 24 H 1.08996 * 109.50025 * 62.49611 * 6 4 3 25 25 H 1.08999 * 109.49670 * 302.37752 * 6 4 3 26 26 H 1.08994 * 109.46349 * 299.16182 * 7 6 4 27 27 H 1.09001 * 109.45886 * 179.18743 * 7 6 4 28 28 H 1.09000 * 109.47200 * 304.88401 * 9 8 7 29 29 H 1.09004 * 109.47414 * 184.88826 * 9 8 7 30 30 H 0.97000 * 119.99834 * 179.97438 * 13 12 10 31 31 H 1.09002 * 109.46494 * 181.75986 * 18 8 7 32 32 H 1.09000 * 109.45908 * 301.72921 * 18 8 7 33 33 H 1.08994 * 109.50479 * 180.88230 * 19 18 8 34 34 H 1.08998 * 109.49559 * 60.76697 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1557 0.7476 1.2341 5 8 2.6769 2.0939 1.2106 6 6 4.6869 0.7496 1.2350 7 6 5.1905 1.4445 2.5021 8 7 4.6834 0.7368 3.6846 9 6 5.2583 1.2920 4.9171 10 6 4.7917 2.7141 5.0929 11 1 4.2006 3.1875 4.3229 12 6 5.1148 3.4090 6.2390 13 7 5.8347 2.8325 7.1766 14 14 4.5300 5.1693 6.4601 15 1 3.7427 5.5825 5.2708 16 1 3.6778 5.2591 7.6729 17 1 5.7043 6.0654 6.6128 18 6 3.2159 0.7627 3.7302 19 6 2.6532 0.0474 2.4997 20 1 -1.0502 0.0000 -0.0003 21 1 3.0091 0.4963 -0.9004 22 1 3.0099 -1.0266 0.0211 23 1 1.7127 2.1684 1.2085 24 1 5.0506 1.2843 0.3576 25 1 5.0521 -0.2772 1.2135 26 1 4.8364 2.4753 2.5161 27 1 6.2804 1.4348 2.5128 28 1 6.3461 1.2718 4.8519 29 1 4.9344 0.6954 5.7700 30 1 6.0623 3.3215 7.9828 31 1 2.8715 0.2579 4.6328 32 1 2.8710 1.7966 3.7385 33 1 1.5641 0.0805 2.5259 34 1 2.9864 -0.9904 2.4982 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880478245.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:30 Heat of formation + Delta-G solvation = -3.938992 kcal Electronic energy + Delta-G solvation = -15694.547829 eV Core-core repulsion = 13207.430772 eV Total energy + Delta-G solvation = -2487.117057 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.36598 -36.07447 -33.61390 -32.79206 -31.34093 -30.24247 -28.41474 -25.80952 -23.02642 -22.60720 -20.88008 -19.21174 -18.08821 -16.59275 -15.94231 -15.31917 -14.66928 -14.53250 -14.21411 -13.87353 -13.63461 -13.05957 -12.68107 -12.23511 -11.91692 -11.60332 -11.38193 -11.05697 -10.82110 -10.71998 -10.58299 -10.51106 -10.24781 -10.20360 -9.83050 -9.71003 -9.54081 -9.23213 -8.38486 -7.07812 -5.97323 -4.05856 2.72880 2.78616 3.29910 3.37874 3.43313 4.28690 4.45432 4.46469 5.00988 5.07677 5.14699 5.26665 5.33336 5.62394 5.70261 5.82064 5.92458 6.05634 6.11669 6.20337 6.28864 6.34190 6.56837 6.71551 6.90409 7.02408 7.35455 7.54183 7.59045 7.90626 7.96043 8.14084 8.37051 8.38744 9.05977 9.60909 11.07534 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.039304 B = 0.007298 C = 0.006847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.217635 B = 3835.989026 C = 4088.372725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.178 4.178 3 C -0.043 4.043 4 C 0.140 3.860 5 O -0.549 6.549 6 C -0.101 4.101 7 C 0.065 3.935 8 N -0.542 5.542 9 C 0.186 3.814 10 C -0.545 4.545 11 H 0.060 0.940 12 C 0.063 3.937 13 N -0.893 5.893 14 Si 0.887 3.113 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.069 3.931 19 C -0.140 4.140 20 H 0.216 0.784 21 H 0.091 0.909 22 H 0.095 0.905 23 H 0.368 0.632 24 H 0.065 0.935 25 H 0.077 0.923 26 H 0.047 0.953 27 H 0.063 0.937 28 H 0.027 0.973 29 H 0.033 0.967 30 H 0.261 0.739 31 H 0.062 0.938 32 H 0.045 0.955 33 H 0.058 0.942 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.174 -5.541 -12.712 15.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.178 4.178 3 C -0.079 4.079 4 C 0.100 3.900 5 O -0.354 6.354 6 C -0.139 4.139 7 C -0.064 4.064 8 N -0.267 5.267 9 C 0.061 3.939 10 C -0.584 4.584 11 H 0.078 0.922 12 C -0.139 4.139 13 N -0.532 5.532 14 Si 0.715 3.285 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.060 4.060 19 C -0.178 4.178 20 H 0.233 0.767 21 H 0.109 0.891 22 H 0.113 0.887 23 H 0.215 0.785 24 H 0.083 0.917 25 H 0.096 0.904 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.045 0.955 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.281 -5.878 -12.565 15.228 hybrid contribution -1.411 1.702 0.334 2.236 sum -7.692 -4.176 -12.231 15.040 Atomic orbital electron populations 1.24873 0.95899 1.01361 1.01349 1.23094 0.94484 1.00166 1.00043 1.19616 0.85061 1.02639 1.00628 1.21222 0.95124 0.81901 0.91786 1.86602 1.25885 1.26008 1.96895 1.21635 0.91314 1.01741 0.99166 1.21776 0.98822 0.96697 0.89058 1.62485 1.05691 1.54310 1.04185 1.19739 0.95023 0.93000 0.86178 1.21852 1.33809 0.99282 1.03481 0.92193 1.24968 0.95018 0.98041 0.95877 1.69960 1.38033 1.37014 1.08229 0.86604 0.78593 0.85222 0.78033 1.19781 1.21036 1.20983 1.21737 0.89654 0.99211 0.95377 1.22311 0.99418 1.00445 0.95613 0.76737 0.89074 0.88717 0.78525 0.91661 0.90431 0.93465 0.91849 0.95509 0.94862 0.92969 0.91977 0.93649 0.92315 0.91027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.32 19.25 29.55 0.57 -1.75 16 2 C -0.18 -2.14 11.12 -37.12 -0.41 -2.55 16 3 C -0.04 -0.50 5.00 -29.52 -0.15 -0.65 16 4 C 0.14 2.06 0.73 -90.50 -0.07 1.99 16 5 O -0.55 -8.92 11.81 -35.23 -0.42 -9.34 16 6 C -0.10 -1.56 5.11 -26.65 -0.14 -1.70 16 7 C 0.07 1.30 4.98 -3.83 -0.02 1.29 16 8 N -0.54 -11.90 4.86 -236.11 -1.15 -13.04 16 9 C 0.19 4.91 5.12 -4.98 -0.03 4.89 16 10 C -0.55 -15.37 7.72 -34.44 -0.27 -15.64 16 11 H 0.06 1.71 5.86 -52.49 -0.31 1.41 16 12 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 13 N -0.89 -26.73 13.29 55.43 0.74 -26.00 16 14 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 15 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 18 C 0.07 1.39 4.90 -3.83 -0.02 1.37 16 19 C -0.14 -2.20 4.78 -26.65 -0.13 -2.33 16 20 H 0.22 1.55 7.80 -54.08 -0.42 1.13 16 21 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 22 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 23 H 0.37 5.03 8.10 45.56 0.37 5.40 16 24 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 25 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.05 1.08 6.48 -51.93 -0.34 0.74 16 27 H 0.06 1.26 8.08 -51.93 -0.42 0.84 16 28 H 0.03 0.75 8.08 -51.93 -0.42 0.33 16 29 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.06 1.28 8.12 -51.93 -0.42 0.86 16 32 H 0.05 1.02 6.34 -51.93 -0.33 0.69 16 33 H 0.06 0.86 7.33 -51.93 -0.38 0.48 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 278.35 15.07 4.19 4.19 Total: -1.00 -30.92 278.35 -6.74 -37.66 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -4.34 Total: 2.95 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: -0.75 Total: -13.37 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: -0.41 Total: -39.04 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -0.42 Total: -9.34 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.92 -6.74 -37.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880478245.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.719 kcal (2) G-P(sol) polarization free energy of solvation -30.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds