Wall clock time and date at job start Mon Mar 30 2020 03:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52993 * 109.47340 * 238.82386 * 3 2 1 5 5 O 1.42910 * 109.57618 * 300.16124 * 4 3 2 6 6 C 1.53123 * 109.52792 * 180.02562 * 4 3 2 7 7 C 1.53037 * 109.27848 * 182.44034 * 6 4 3 8 8 N 1.46846 * 109.52367 * 59.18032 * 7 6 4 9 9 C 1.46898 * 111.00026 * 174.16006 * 8 7 6 10 10 C 1.50700 * 109.47432 * 64.88962 * 9 8 7 11 11 H 1.07998 * 119.99782 * 354.99210 * 10 9 8 12 12 C 1.37874 * 120.00241 * 174.71994 * 10 9 8 13 13 N 1.31514 * 119.99703 * 0.27681 * 12 10 9 14 14 Si 1.86802 * 119.99888 * 180.27176 * 12 10 9 15 15 H 1.48493 * 109.47366 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.46708 * 120.00319 * 14 12 10 17 17 H 1.48499 * 109.46908 * 239.99987 * 14 12 10 18 18 C 1.46852 * 111.19928 * 298.25506 * 8 7 6 19 19 C 1.53040 * 109.52362 * 61.73868 * 18 8 7 20 20 H 4.44654 * 5.63283 * 179.97438 * 4 1 2 21 21 H 1.09006 * 109.47173 * 118.82383 * 3 2 1 22 22 H 1.09005 * 109.47485 * 358.82409 * 3 2 1 23 23 H 0.96703 * 113.99704 * 59.83457 * 5 4 3 24 24 H 1.08996 * 109.50025 * 62.49611 * 6 4 3 25 25 H 1.08999 * 109.49670 * 302.37752 * 6 4 3 26 26 H 1.08994 * 109.46349 * 299.16182 * 7 6 4 27 27 H 1.09001 * 109.45886 * 179.18743 * 7 6 4 28 28 H 1.09000 * 109.47200 * 304.88401 * 9 8 7 29 29 H 1.09004 * 109.47414 * 184.88826 * 9 8 7 30 30 H 0.97000 * 119.99834 * 179.97438 * 13 12 10 31 31 H 1.09002 * 109.46494 * 181.75986 * 18 8 7 32 32 H 1.09000 * 109.45908 * 301.72921 * 18 8 7 33 33 H 1.08994 * 109.50479 * 180.88230 * 19 18 8 34 34 H 1.08998 * 109.49559 * 60.76697 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1557 0.7476 1.2341 5 8 2.6769 2.0939 1.2106 6 6 4.6869 0.7496 1.2350 7 6 5.1905 1.4445 2.5021 8 7 4.6834 0.7368 3.6846 9 6 5.2583 1.2920 4.9171 10 6 4.7917 2.7141 5.0929 11 1 4.2006 3.1875 4.3229 12 6 5.1148 3.4090 6.2390 13 7 5.8347 2.8325 7.1766 14 14 4.5300 5.1693 6.4601 15 1 3.7427 5.5825 5.2708 16 1 3.6778 5.2591 7.6729 17 1 5.7043 6.0654 6.6128 18 6 3.2159 0.7627 3.7302 19 6 2.6532 0.0474 2.4997 20 1 -1.0502 0.0000 -0.0003 21 1 3.0091 0.4963 -0.9004 22 1 3.0099 -1.0266 0.0211 23 1 1.7127 2.1684 1.2085 24 1 5.0506 1.2843 0.3576 25 1 5.0521 -0.2772 1.2135 26 1 4.8364 2.4753 2.5161 27 1 6.2804 1.4348 2.5128 28 1 6.3461 1.2718 4.8519 29 1 4.9344 0.6954 5.7700 30 1 6.0623 3.3215 7.9828 31 1 2.8715 0.2579 4.6328 32 1 2.8710 1.7966 3.7385 33 1 1.5641 0.0805 2.5259 34 1 2.9864 -0.9904 2.4982 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880478245.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:30 Heat of formation + Delta-G solvation = -26.576814 kcal Electronic energy + Delta-G solvation = -15695.529478 eV Core-core repulsion = 13207.430772 eV Total energy + Delta-G solvation = -2488.098707 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.70900 -37.66482 -34.82842 -34.55760 -32.79870 -31.70941 -29.80900 -27.64908 -24.81368 -24.08952 -22.49664 -20.69450 -18.95306 -18.57654 -17.24780 -17.03164 -16.31395 -15.85130 -15.67859 -15.45313 -15.01106 -14.52843 -14.10011 -13.74540 -13.53156 -13.22424 -12.98940 -12.89326 -12.45888 -12.32542 -12.22905 -12.04684 -11.81433 -11.73677 -11.46887 -11.16366 -10.91966 -10.62566 -10.47695 -9.00249 -8.16310 -6.36151 1.33199 1.34326 1.47132 1.88795 1.97048 2.35834 3.07145 3.26930 3.42745 3.54797 3.87170 3.92238 4.07007 4.39016 4.59986 4.65628 4.74977 4.77610 4.79018 4.93245 5.01333 5.06526 5.17452 5.24276 5.27032 5.32452 5.33155 5.43687 5.73877 6.06296 6.27237 6.57359 6.72842 6.82929 6.85820 7.35150 8.85657 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.039304 B = 0.007298 C = 0.006847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.217635 B = 3835.989026 C = 4088.372725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.215 4.215 3 C -0.031 4.031 4 C 0.141 3.859 5 O -0.570 6.570 6 C -0.095 4.095 7 C 0.065 3.935 8 N -0.537 5.537 9 C 0.198 3.802 10 C -0.554 4.554 11 H 0.052 0.948 12 C 0.011 3.989 13 N -0.926 5.926 14 Si 0.957 3.043 15 H -0.272 1.272 16 H -0.275 1.275 17 H -0.275 1.275 18 C 0.070 3.930 19 C -0.128 4.128 20 H 0.243 0.757 21 H 0.102 0.898 22 H 0.112 0.888 23 H 0.378 0.622 24 H 0.084 0.916 25 H 0.099 0.901 26 H 0.015 0.985 27 H 0.057 0.943 28 H 0.004 0.996 29 H 0.006 0.994 30 H 0.265 0.735 31 H 0.049 0.951 32 H 0.017 0.983 33 H 0.073 0.927 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.480 -5.709 -14.401 17.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.215 4.215 3 C -0.068 4.068 4 C 0.100 3.900 5 O -0.377 6.377 6 C -0.132 4.132 7 C -0.063 4.063 8 N -0.261 5.261 9 C 0.071 3.929 10 C -0.593 4.593 11 H 0.070 0.930 12 C -0.188 4.188 13 N -0.566 5.566 14 Si 0.782 3.218 15 H -0.196 1.196 16 H -0.201 1.201 17 H -0.201 1.201 18 C -0.058 4.058 19 C -0.166 4.166 20 H 0.260 0.740 21 H 0.120 0.880 22 H 0.130 0.870 23 H 0.226 0.774 24 H 0.103 0.897 25 H 0.117 0.883 26 H 0.033 0.967 27 H 0.076 0.924 28 H 0.022 0.978 29 H 0.025 0.975 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.035 0.965 33 H 0.091 0.909 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.598 -6.056 -14.271 17.265 hybrid contribution -1.028 1.734 0.868 2.195 sum -8.627 -4.322 -13.404 16.515 Atomic orbital electron populations 1.25655 0.96771 0.99922 0.99656 1.23323 0.95038 1.01547 1.01564 1.19441 0.85233 1.03117 0.98991 1.21228 0.94416 0.81601 0.92719 1.86577 1.26931 1.27168 1.97004 1.21629 0.92181 1.02582 0.96852 1.21806 0.98571 0.95466 0.90453 1.62443 1.06805 1.53755 1.03121 1.19419 0.93716 0.92212 0.87563 1.22006 1.33690 1.00129 1.03458 0.93005 1.25812 0.95067 1.02419 0.95534 1.70068 1.38959 1.38829 1.08782 0.85525 0.78321 0.79897 0.78065 1.19632 1.20072 1.20069 1.21742 0.88397 0.98113 0.97562 1.22225 1.00062 1.00486 0.93822 0.74048 0.88010 0.86978 0.77432 0.89738 0.88277 0.96709 0.92438 0.97781 0.97539 0.92561 0.93231 0.96469 0.90853 0.89714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.65 19.25 74.32 1.43 -2.22 16 2 C -0.21 -4.50 11.12 31.12 0.35 -4.15 16 3 C -0.03 -0.63 5.00 28.79 0.14 -0.49 16 4 C 0.14 3.83 0.73 -10.72 -0.01 3.82 16 5 O -0.57 -17.85 11.81 -148.98 -1.76 -19.61 16 6 C -0.09 -2.75 5.11 30.65 0.16 -2.60 16 7 C 0.07 2.65 4.98 86.33 0.43 3.08 16 8 N -0.54 -24.08 4.86 -900.92 -4.38 -28.45 16 9 C 0.20 10.89 5.12 85.56 0.44 11.33 16 10 C -0.55 -32.23 7.72 25.60 0.20 -32.03 16 11 H 0.05 3.06 5.86 -2.91 -0.02 3.04 16 12 C 0.01 0.63 5.46 84.65 0.46 1.09 16 13 N -0.93 -56.55 13.29 21.45 0.28 -56.27 16 14 Si 0.96 45.61 29.54 68.60 2.03 47.64 16 15 H -0.27 -12.78 7.11 99.48 0.71 -12.08 16 16 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 18 C 0.07 2.88 4.90 86.33 0.42 3.30 16 19 C -0.13 -3.82 4.78 30.65 0.15 -3.67 16 20 H 0.24 2.56 7.80 -4.41 -0.03 2.53 16 21 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 22 H 0.11 1.87 8.14 -2.38 -0.02 1.85 16 23 H 0.38 9.83 8.10 -74.06 -0.60 9.23 16 24 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 25 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 26 H 0.01 0.68 6.48 -2.39 -0.02 0.67 16 27 H 0.06 2.34 8.08 -2.39 -0.02 2.32 16 28 H 0.00 0.24 8.08 -2.39 -0.02 0.22 16 29 H 0.01 0.38 8.14 -2.38 -0.02 0.37 16 30 H 0.27 15.16 8.31 -92.71 -0.77 14.38 16 31 H 0.05 2.10 8.12 -2.39 -0.02 2.08 16 32 H 0.02 0.79 6.34 -2.39 -0.02 0.78 16 33 H 0.07 1.99 7.33 -2.39 -0.02 1.97 16 34 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -67.89 278.35 0.82 -67.07 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 0.48 Total: 12.17 kcal Atomic # 6 Polarization: -26.70 SS G_CDS: 4.17 Total: -22.54 kcal Atomic # 7 Polarization: -80.63 SS G_CDS: -4.09 Total: -84.72 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -1.76 Total: -19.61 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -67.89 0.82 -67.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880478245.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.493 kcal (2) G-P(sol) polarization free energy of solvation -67.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds