Wall clock time and date at job start Mon Mar 30 2020 02:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86796 * 120.00001 * 2 1 4 4 H 1.48500 * 109.47423 * 240.00160 * 3 2 1 5 5 H 1.48507 * 109.47213 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47265 * 119.99825 * 3 2 1 7 7 C 1.40053 * 120.00143 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99811 * 180.02562 * 7 2 1 9 9 C 1.46376 * 119.99876 * 359.97438 * 7 2 1 10 10 O 1.21693 * 120.00084 * 0.02562 * 9 7 2 11 11 N 1.34773 * 119.99929 * 180.02562 * 9 7 2 12 12 C 1.46497 * 119.99879 * 180.02562 * 11 9 7 13 13 C 1.53001 * 115.54847 * 179.97438 * 12 11 9 14 14 C 1.54263 * 110.48804 * 57.54783 * 13 12 11 15 15 C 1.53876 * 106.64427 * 217.73596 * 14 13 12 16 16 C 1.54273 * 106.59523 * 359.97200 * 15 14 13 17 17 C 1.54898 * 104.19491 * 23.61138 * 16 15 14 18 18 C 1.52996 * 117.50151 * 325.65123 * 12 11 9 19 19 C 1.52998 * 117.50397 * 34.31184 * 12 11 9 20 20 H 0.96999 * 120.00502 * 359.97438 * 1 2 3 21 21 H 0.96997 * 119.99937 * 0.02562 * 11 9 7 22 22 H 1.09006 * 110.54032 * 180.15888 * 13 12 11 23 23 H 1.09004 * 110.03547 * 98.42320 * 14 13 12 24 24 H 1.08997 * 110.03129 * 337.04443 * 14 13 12 25 25 H 1.08997 * 110.03217 * 119.25512 * 15 14 13 26 26 H 1.08998 * 110.03324 * 240.69188 * 15 14 13 27 27 H 1.08998 * 110.48349 * 142.28283 * 16 15 14 28 28 H 1.08998 * 110.49093 * 264.93118 * 16 15 14 29 29 H 1.09000 * 110.75380 * 80.37150 * 17 16 15 30 30 H 1.08997 * 110.75250 * 203.55506 * 17 16 15 31 31 H 1.08997 * 117.50258 * 215.01062 * 18 12 11 32 32 H 1.09008 * 117.49797 * 0.02738 * 18 12 11 33 33 H 1.08998 * 117.49440 * 359.97438 * 19 12 11 34 34 H 1.09000 * 117.50025 * 144.97339 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0944 1.6964 -1.2125 5 1 1.2756 2.7465 0.0006 6 1 3.0944 1.6964 1.2126 7 6 2.0070 -1.2129 -0.0005 8 1 3.0869 -1.2128 -0.0001 9 6 1.2751 -2.4805 -0.0005 10 8 0.0582 -2.4806 -0.0005 11 7 1.9490 -3.6477 -0.0005 12 6 1.2165 -4.9164 -0.0011 13 6 2.0820 -6.1780 -0.0017 14 6 3.0269 -6.1852 1.2177 15 6 4.3620 -6.7806 0.7373 16 6 4.1824 -7.1157 -0.7579 17 6 3.0375 -6.1811 -1.2217 18 6 -0.1074 -4.9682 0.7641 19 6 -0.1072 -4.9677 -0.7666 20 1 -0.4851 0.8400 0.0004 21 1 2.9190 -3.6477 -0.0002 22 1 1.4567 -7.0709 -0.0049 23 1 2.6070 -6.8025 2.0119 24 1 3.1798 -5.1677 1.5775 25 1 5.1626 -6.0518 0.8631 26 1 4.5899 -7.6870 1.2982 27 1 5.0975 -6.9006 -1.3095 28 1 3.8967 -8.1601 -0.8832 29 1 3.4142 -5.1775 -1.4190 30 1 2.5415 -6.5863 -2.1036 31 1 -0.3617 -5.9010 1.2673 32 1 -0.4336 -4.0581 1.2676 33 1 -0.4333 -4.0572 -1.2695 34 1 -0.3613 -5.9000 -1.2708 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885598279.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:11 Heat of formation + Delta-G solvation = -28.937257 kcal Electronic energy + Delta-G solvation = -15705.483724 eV Core-core repulsion = 13217.282661 eV Total energy + Delta-G solvation = -2488.201063 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.19796 -36.97867 -34.72348 -32.39204 -31.19781 -28.47623 -28.32105 -26.13841 -21.66300 -21.56441 -20.39333 -19.95383 -18.07414 -17.41490 -15.61363 -15.52771 -15.04963 -14.02105 -13.93811 -13.16294 -13.06249 -12.88580 -12.59874 -12.22719 -11.51239 -11.33139 -11.05884 -11.04072 -10.97012 -10.87737 -10.47057 -10.43966 -10.31545 -10.25764 -10.15320 -9.64302 -9.35692 -8.80375 -7.43749 -7.11071 -6.16013 -4.62797 3.15833 3.20907 3.22556 4.10501 4.42213 4.68163 4.71414 4.89610 4.91171 5.07873 5.39538 5.64382 5.71399 5.75294 5.78075 5.79790 5.84494 6.01606 6.03438 6.15696 6.21091 6.25863 6.45635 6.48073 6.51011 6.52966 6.68022 7.07891 7.38078 7.44081 7.94543 8.20459 8.35932 9.03362 9.57891 10.61452 10.80908 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.035254 B = 0.007882 C = 0.006921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.054069 B = 3551.737622 C = 4044.748495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.089 3.911 3 Si 0.906 3.094 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.546 4.546 8 H 0.065 0.935 9 C 0.556 3.444 10 O -0.571 6.571 11 N -0.729 5.729 12 C 0.124 3.876 13 C -0.053 4.053 14 C -0.121 4.121 15 C -0.124 4.124 16 C -0.125 4.125 17 C -0.118 4.118 18 C -0.185 4.185 19 C -0.185 4.185 20 H 0.268 0.732 21 H 0.382 0.618 22 H 0.077 0.923 23 H 0.059 0.941 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.001 -10.693 -0.056 12.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.583 4.583 8 H 0.084 0.916 9 C 0.360 3.640 10 O -0.454 6.454 11 N -0.382 5.382 12 C 0.035 3.965 13 C -0.072 4.072 14 C -0.159 4.159 15 C -0.162 4.162 16 C -0.162 4.162 17 C -0.155 4.155 18 C -0.224 4.224 19 C -0.223 4.223 20 H 0.079 0.921 21 H 0.214 0.786 22 H 0.095 0.905 23 H 0.078 0.922 24 H 0.091 0.909 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.945 -10.557 -0.048 12.116 hybrid contribution 0.858 0.802 0.028 1.175 sum 6.803 -9.755 -0.021 11.893 Atomic orbital electron populations 1.69998 1.06971 1.27313 1.35302 1.25669 0.94599 1.00154 0.92646 0.86463 0.79847 0.81191 0.79404 1.19335 1.20582 1.19343 1.20852 0.93511 0.89477 1.54477 0.91648 1.18167 0.87328 0.82157 0.76347 1.90546 1.13812 1.86572 1.54459 1.45525 1.08095 1.03386 1.81148 1.20180 0.86069 0.85946 1.04342 1.21590 0.95500 0.95171 0.94908 1.22175 0.94426 1.01782 0.97467 1.22144 0.97881 1.00227 0.95921 1.22365 0.98661 0.99313 0.95905 1.22529 0.95582 1.00134 0.97305 1.23347 1.01838 1.02218 0.94972 1.23343 1.01814 1.02227 0.94954 0.92101 0.78567 0.90503 0.92210 0.90860 0.91935 0.92389 0.91975 0.92081 0.90798 0.91802 0.91132 0.86983 0.86979 0.91125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.84 11.83 55.55 0.66 -22.19 16 2 C 0.09 2.48 5.50 -17.37 -0.10 2.38 16 3 Si 0.91 20.19 29.56 -169.99 -5.02 15.17 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.55 -15.35 9.54 -35.63 -0.34 -15.69 16 8 H 0.07 1.69 7.85 -52.49 -0.41 1.28 16 9 C 0.56 15.52 7.45 -12.99 -0.10 15.42 16 10 O -0.57 -17.63 10.49 5.19 0.05 -17.57 16 11 N -0.73 -16.35 4.83 -49.00 -0.24 -16.58 16 12 C 0.12 2.43 2.20 -131.82 -0.29 2.14 16 13 C -0.05 -0.79 2.76 -88.92 -0.25 -1.04 16 14 C -0.12 -1.67 6.25 -25.61 -0.16 -1.83 16 15 C -0.12 -1.43 6.80 -25.61 -0.17 -1.61 16 16 C -0.12 -1.41 6.83 -25.06 -0.17 -1.58 16 17 C -0.12 -1.62 6.28 -24.69 -0.16 -1.77 16 18 C -0.18 -3.86 9.44 -26.70 -0.25 -4.12 16 19 C -0.18 -3.85 9.44 -26.70 -0.25 -4.11 16 20 H 0.27 7.30 8.29 -40.82 -0.34 6.97 16 21 H 0.38 7.71 7.37 -40.82 -0.30 7.41 16 22 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.07 1.14 7.00 -51.93 -0.36 0.78 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.07 1.12 7.03 -51.93 -0.36 0.75 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.11 2.81 6.37 -51.92 -0.33 2.48 16 33 H 0.11 2.81 6.37 -51.93 -0.33 2.48 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 274.09 15.07 4.13 4.13 Total: -1.00 -31.61 274.09 -7.69 -39.30 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -5.04 Total: 9.53 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: -2.23 Total: -11.79 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.42 Total: -38.77 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: 0.05 Total: -17.57 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -31.61 -7.69 -39.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885598279.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.365 kcal (2) G-P(sol) polarization free energy of solvation -31.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds