Wall clock time and date at job start Mon Mar 30 2020 02:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86796 * 120.00001 * 2 1 4 4 H 1.48500 * 109.47423 * 240.00160 * 3 2 1 5 5 H 1.48507 * 109.47213 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47265 * 119.99825 * 3 2 1 7 7 C 1.40053 * 120.00143 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99811 * 180.02562 * 7 2 1 9 9 C 1.46376 * 119.99876 * 359.97438 * 7 2 1 10 10 O 1.21693 * 120.00084 * 0.02562 * 9 7 2 11 11 N 1.34773 * 119.99929 * 180.02562 * 9 7 2 12 12 C 1.46497 * 119.99879 * 180.02562 * 11 9 7 13 13 C 1.53001 * 115.54847 * 179.97438 * 12 11 9 14 14 C 1.54263 * 110.48804 * 57.54783 * 13 12 11 15 15 C 1.53876 * 106.64427 * 217.73596 * 14 13 12 16 16 C 1.54273 * 106.59523 * 359.97200 * 15 14 13 17 17 C 1.54898 * 104.19491 * 23.61138 * 16 15 14 18 18 C 1.52996 * 117.50151 * 325.65123 * 12 11 9 19 19 C 1.52998 * 117.50397 * 34.31184 * 12 11 9 20 20 H 0.96999 * 120.00502 * 359.97438 * 1 2 3 21 21 H 0.96997 * 119.99937 * 0.02562 * 11 9 7 22 22 H 1.09006 * 110.54032 * 180.15888 * 13 12 11 23 23 H 1.09004 * 110.03547 * 98.42320 * 14 13 12 24 24 H 1.08997 * 110.03129 * 337.04443 * 14 13 12 25 25 H 1.08997 * 110.03217 * 119.25512 * 15 14 13 26 26 H 1.08998 * 110.03324 * 240.69188 * 15 14 13 27 27 H 1.08998 * 110.48349 * 142.28283 * 16 15 14 28 28 H 1.08998 * 110.49093 * 264.93118 * 16 15 14 29 29 H 1.09000 * 110.75380 * 80.37150 * 17 16 15 30 30 H 1.08997 * 110.75250 * 203.55506 * 17 16 15 31 31 H 1.08997 * 117.50258 * 215.01062 * 18 12 11 32 32 H 1.09008 * 117.49797 * 0.02738 * 18 12 11 33 33 H 1.08998 * 117.49440 * 359.97438 * 19 12 11 34 34 H 1.09000 * 117.50025 * 144.97339 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0944 1.6964 -1.2125 5 1 1.2756 2.7465 0.0006 6 1 3.0944 1.6964 1.2126 7 6 2.0070 -1.2129 -0.0005 8 1 3.0869 -1.2128 -0.0001 9 6 1.2751 -2.4805 -0.0005 10 8 0.0582 -2.4806 -0.0005 11 7 1.9490 -3.6477 -0.0005 12 6 1.2165 -4.9164 -0.0011 13 6 2.0820 -6.1780 -0.0017 14 6 3.0269 -6.1852 1.2177 15 6 4.3620 -6.7806 0.7373 16 6 4.1824 -7.1157 -0.7579 17 6 3.0375 -6.1811 -1.2217 18 6 -0.1074 -4.9682 0.7641 19 6 -0.1072 -4.9677 -0.7666 20 1 -0.4851 0.8400 0.0004 21 1 2.9190 -3.6477 -0.0002 22 1 1.4567 -7.0709 -0.0049 23 1 2.6070 -6.8025 2.0119 24 1 3.1798 -5.1677 1.5775 25 1 5.1626 -6.0518 0.8631 26 1 4.5899 -7.6870 1.2982 27 1 5.0975 -6.9006 -1.3095 28 1 3.8967 -8.1601 -0.8832 29 1 3.4142 -5.1775 -1.4190 30 1 2.5415 -6.5863 -2.1036 31 1 -0.3617 -5.9010 1.2673 32 1 -0.4336 -4.0581 1.2676 33 1 -0.4333 -4.0572 -1.2695 34 1 -0.3613 -5.9000 -1.2708 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885598279.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:10 Heat of formation + Delta-G solvation = -49.470646 kcal Electronic energy + Delta-G solvation = -15706.374119 eV Core-core repulsion = 13217.282661 eV Total energy + Delta-G solvation = -2489.091458 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.79626 -38.55219 -36.42915 -34.53179 -33.17020 -29.50127 -29.48377 -28.27137 -23.32402 -23.22716 -21.90459 -21.01671 -19.76071 -19.33194 -17.59308 -16.81724 -16.53087 -15.73703 -15.43304 -14.82125 -14.67486 -14.24269 -14.17123 -14.02163 -13.13989 -12.94634 -12.77762 -12.60091 -12.48871 -12.07192 -11.99764 -11.97679 -11.86001 -11.50498 -11.32990 -11.11939 -10.91492 -10.87190 -9.62774 -9.01899 -8.26758 -6.84328 1.37903 1.41207 1.52533 2.23106 2.44280 3.01809 3.04412 3.65934 3.71491 3.81420 3.88167 4.18010 4.32153 4.37448 4.64929 4.66755 4.77874 4.84543 4.85764 4.88867 4.93732 5.08799 5.18455 5.21648 5.31109 5.34903 5.40702 5.54219 5.56964 5.59901 5.88393 6.24403 6.40229 6.87279 7.58420 8.52306 8.69730 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.035254 B = 0.007882 C = 0.006921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.054069 B = 3551.737622 C = 4044.748495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.031 3.969 3 Si 0.994 3.006 4 H -0.255 1.255 5 H -0.274 1.274 6 H -0.256 1.256 7 C -0.577 4.577 8 H 0.082 0.918 9 C 0.539 3.461 10 O -0.610 6.610 11 N -0.720 5.720 12 C 0.130 3.870 13 C -0.047 4.047 14 C -0.121 4.121 15 C -0.120 4.120 16 C -0.116 4.116 17 C -0.120 4.120 18 C -0.191 4.191 19 C -0.190 4.190 20 H 0.273 0.727 21 H 0.394 0.606 22 H 0.099 0.901 23 H 0.071 0.929 24 H 0.048 0.952 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.109 0.891 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.258 -12.073 -0.090 15.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.184 4.184 3 Si 0.814 3.186 4 H -0.179 1.179 5 H -0.199 1.199 6 H -0.180 1.180 7 C -0.614 4.614 8 H 0.100 0.900 9 C 0.342 3.658 10 O -0.496 6.496 11 N -0.372 5.372 12 C 0.041 3.959 13 C -0.066 4.066 14 C -0.159 4.159 15 C -0.157 4.157 16 C -0.153 4.153 17 C -0.158 4.158 18 C -0.229 4.229 19 C -0.228 4.228 20 H 0.083 0.917 21 H 0.228 0.772 22 H 0.117 0.883 23 H 0.090 0.910 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.097 0.903 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.127 0.873 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 8.240 -11.978 -0.082 14.539 hybrid contribution 0.108 1.182 0.041 1.187 sum 8.348 -10.797 -0.041 13.648 Atomic orbital electron populations 1.70170 1.09367 1.28844 1.36610 1.26891 0.95495 1.04709 0.91277 0.85127 0.78265 0.75047 0.80195 1.17932 1.19913 1.17957 1.21404 0.94567 0.90384 1.55025 0.89960 1.18510 0.87118 0.83898 0.76226 1.90530 1.15465 1.87584 1.55993 1.45227 1.08688 1.03481 1.79759 1.20605 0.86179 0.86531 1.02572 1.21663 0.95496 0.92936 0.96472 1.22170 0.95632 1.00860 0.97197 1.22129 0.96274 1.00983 0.96344 1.22337 0.97971 0.99550 0.95474 1.22532 0.96321 0.99909 0.96990 1.23219 1.03241 1.01644 0.94825 1.23216 1.03167 1.01674 0.94773 0.91693 0.77211 0.88307 0.91026 0.93346 0.91928 0.90310 0.90859 0.90244 0.92825 0.91140 0.87312 0.92023 0.92002 0.87266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.76 11.83 21.84 0.26 -50.50 16 2 C 0.03 1.77 5.50 85.31 0.47 2.24 16 3 Si 0.99 41.66 29.56 68.60 2.03 43.69 16 4 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 5 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 6 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 7 C -0.58 -33.22 9.54 24.83 0.24 -32.98 16 8 H 0.08 4.28 7.85 -2.91 -0.02 4.26 16 9 C 0.54 31.39 7.45 86.36 0.64 32.04 16 10 O -0.61 -39.96 10.49 -4.33 -0.05 -40.01 16 11 N -0.72 -33.07 4.83 -427.17 -2.06 -35.13 16 12 C 0.13 5.09 2.20 3.60 0.01 5.10 16 13 C -0.05 -1.30 2.76 -9.69 -0.03 -1.33 16 14 C -0.12 -3.04 6.25 31.32 0.20 -2.84 16 15 C -0.12 -2.34 6.80 31.32 0.21 -2.13 16 16 C -0.12 -2.16 6.83 31.67 0.22 -1.95 16 17 C -0.12 -2.99 6.28 31.91 0.20 -2.79 16 18 C -0.19 -8.09 9.44 30.62 0.29 -7.80 16 19 C -0.19 -8.04 9.44 30.62 0.29 -7.75 16 20 H 0.27 15.41 8.29 -92.71 -0.77 14.64 16 21 H 0.39 16.07 7.37 -92.71 -0.68 15.39 16 22 H 0.10 2.39 8.14 -2.38 -0.02 2.37 16 23 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.05 1.45 7.00 -2.39 -0.02 1.44 16 25 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.05 1.55 7.03 -2.39 -0.02 1.53 16 30 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.11 3.71 8.14 -2.39 -0.02 3.70 16 32 H 0.06 3.28 6.37 -2.38 -0.02 3.26 16 33 H 0.06 3.28 6.37 -2.39 -0.02 3.27 16 34 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 Total: -1.00 -72.93 274.09 3.32 -69.61 By element: Atomic # 1 Polarization: 32.12 SS G_CDS: 0.41 Total: 32.52 kcal Atomic # 6 Polarization: -22.92 SS G_CDS: 2.73 Total: -20.19 kcal Atomic # 7 Polarization: -83.82 SS G_CDS: -1.80 Total: -85.63 kcal Atomic # 8 Polarization: -39.96 SS G_CDS: -0.05 Total: -40.01 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -72.93 3.32 -69.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885598279.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.142 kcal (2) G-P(sol) polarization free energy of solvation -72.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds