Wall clock time and date at job start Mon Mar 30 2020 02:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00153 * 2 1 4 4 H 1.48503 * 109.47245 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46926 * 59.99938 * 3 2 1 6 6 H 1.48497 * 109.47148 * 300.00100 * 3 2 1 7 7 C 1.37882 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99756 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99959 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.46883 * 177.81520 * 9 7 2 11 11 C 1.46085 * 120.23879 * 90.93274 * 10 9 7 12 12 C 1.53446 * 109.84756 * 111.11345 * 11 10 9 13 13 H 1.09001 * 112.02330 * 217.37482 * 12 11 10 14 14 C 1.54339 * 108.57838 * 340.85509 * 12 11 10 15 15 C 1.53862 * 106.49304 * 92.69502 * 14 12 11 16 16 C 1.54437 * 106.43954 * 359.78561 * 15 14 12 17 17 H 1.09002 * 111.46152 * 144.75970 * 16 15 14 18 18 C 1.54132 * 104.43680 * 23.41185 * 16 15 14 19 19 C 1.52873 * 108.23921 * 267.55745 * 16 15 14 20 20 C 1.35753 * 120.23654 * 271.20434 * 10 9 7 21 21 O 1.21274 * 120.35832 * 0.07458 * 20 10 9 22 22 H 0.96997 * 119.99638 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47026 * 297.81502 * 9 7 2 24 24 H 1.09006 * 109.46868 * 57.81688 * 9 7 2 25 25 H 1.09000 * 109.36514 * 231.30132 * 11 10 9 26 26 H 1.09004 * 109.36100 * 350.88788 * 11 10 9 27 27 H 1.09004 * 110.05756 * 333.43747 * 14 12 11 28 28 H 1.09002 * 110.05309 * 211.95009 * 14 12 11 29 29 H 1.08999 * 110.06344 * 240.53562 * 15 14 12 30 30 H 1.08997 * 110.10773 * 119.05388 * 15 14 12 31 31 H 1.09005 * 110.70450 * 80.89655 * 18 16 15 32 32 H 1.09004 * 110.71381 * 204.13282 * 18 16 15 33 33 H 1.08994 * 109.38918 * 260.94235 * 19 16 15 34 34 H 1.09006 * 109.38813 * 141.24596 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 1.2125 6 1 1.8905 2.3964 -1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2021 -3.6122 -0.0515 11 6 2.7053 -4.2082 1.1836 12 6 2.1474 -5.6289 1.3415 13 1 1.9151 -5.8638 2.3803 14 6 0.9032 -5.7717 0.4395 15 6 1.3993 -6.3370 -0.9028 16 6 2.9278 -6.5107 -0.7657 17 1 3.2793 -7.3898 -1.3058 18 6 3.1667 -6.6262 0.7526 19 6 3.6018 -5.2371 -1.2762 20 6 2.6264 -4.0934 -1.2479 21 8 2.2233 -3.6058 -2.2825 22 1 -0.4849 -0.8400 -0.0004 23 1 0.6537 -2.5738 0.9093 24 1 0.5956 -2.5403 -0.8695 25 1 3.7941 -4.2469 1.1489 26 1 2.3944 -3.5984 2.0320 27 1 0.4390 -4.7974 0.2860 28 1 0.1893 -6.4590 0.8934 29 1 1.1731 -5.6392 -1.7089 30 1 0.9297 -7.3006 -1.1000 31 1 2.9598 -7.6387 1.0994 32 1 4.1851 -6.3315 1.0062 33 1 3.9454 -5.3944 -2.2985 34 1 4.4557 -5.0002 -0.6415 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885598310.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:09 Heat of formation + Delta-G solvation = -44.077080 kcal Electronic energy + Delta-G solvation = -16339.515035 eV Core-core repulsion = 13850.657459 eV Total energy + Delta-G solvation = -2488.857575 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.75987 -37.05867 -34.85999 -32.65774 -31.17166 -29.48826 -27.58164 -25.30599 -24.43585 -22.82964 -20.41410 -19.56440 -17.61339 -16.89453 -16.53267 -16.25486 -15.36507 -14.53344 -13.71804 -13.64383 -13.19362 -12.99914 -12.80752 -12.33526 -12.11130 -11.75970 -11.39547 -11.19834 -10.92397 -10.82895 -10.69405 -10.59689 -10.43085 -10.21287 -10.14962 -10.11708 -9.08377 -8.86446 -8.36180 -7.54955 -6.36443 -4.08377 3.39984 3.44701 3.49492 3.62154 3.97216 4.51355 4.55311 4.65206 4.80340 5.10787 5.37307 5.40211 5.51486 5.52730 5.57498 5.66565 5.74159 5.78798 5.91603 5.92912 6.14510 6.18441 6.22156 6.23374 6.32798 6.45798 6.62534 6.85188 7.13630 7.50097 8.07078 8.34192 8.46904 8.80458 9.07699 9.61563 11.00663 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.043639 B = 0.008555 C = 0.008325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.469157 B = 3272.131597 C = 3362.558257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.018 3.982 3 Si 1.077 2.923 4 H -0.290 1.290 5 H -0.287 1.287 6 H -0.286 1.286 7 C -0.605 4.605 8 H 0.051 0.949 9 C 0.237 3.763 10 N -0.592 5.592 11 C 0.120 3.880 12 C -0.115 4.115 13 H 0.084 0.916 14 C -0.120 4.120 15 C -0.131 4.131 16 C -0.084 4.084 17 H 0.083 0.917 18 C -0.115 4.115 19 C -0.140 4.140 20 C 0.519 3.481 21 O -0.548 6.548 22 H 0.268 0.732 23 H 0.020 0.980 24 H 0.031 0.969 25 H 0.061 0.939 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.991 -13.809 3.585 15.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.186 4.186 3 Si 0.905 3.095 4 H -0.216 1.216 5 H -0.213 1.213 6 H -0.212 1.212 7 C -0.644 4.644 8 H 0.070 0.930 9 C 0.117 3.883 10 N -0.324 5.324 11 C -0.005 4.005 12 C -0.134 4.134 13 H 0.102 0.898 14 C -0.158 4.158 15 C -0.168 4.168 16 C -0.103 4.103 17 H 0.102 0.898 18 C -0.153 4.153 19 C -0.180 4.180 20 C 0.307 3.693 21 O -0.426 6.426 22 H 0.078 0.922 23 H 0.038 0.962 24 H 0.049 0.951 25 H 0.080 0.920 26 H 0.100 0.900 27 H 0.098 0.902 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.563 -11.867 3.041 13.455 hybrid contribution 0.269 -1.670 0.082 1.694 sum 5.832 -13.537 3.122 15.067 Atomic orbital electron populations 1.70744 1.06801 1.30470 1.46729 1.25815 0.96472 1.02633 0.93639 0.83433 0.74379 0.74690 0.76953 1.21629 1.21323 1.21230 1.22330 0.94690 0.91786 1.55573 0.93043 1.19321 0.88283 0.83963 0.96698 1.48146 1.45461 1.34417 1.04348 1.21484 0.97862 0.92668 0.88451 1.22548 0.95687 0.95756 0.99439 0.89770 1.22257 0.97051 1.01983 0.94527 1.22444 0.94681 1.00906 0.98787 1.21804 0.95785 0.96431 0.96273 0.89848 1.22550 0.98961 0.99175 0.94582 1.21922 0.98588 0.94057 1.03470 1.20329 0.81955 0.83331 0.83700 1.90669 1.58291 1.61025 1.32614 0.92208 0.96233 0.95127 0.92029 0.90015 0.90191 0.92588 0.90772 0.92114 0.91535 0.91208 0.89496 0.89824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.14 13.65 55.43 0.76 -27.38 16 2 C 0.02 0.54 5.46 -17.82 -0.10 0.45 16 3 Si 1.08 26.14 29.90 -169.99 -5.08 21.06 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 7 C -0.60 -17.61 9.38 -34.44 -0.32 -17.93 16 8 H 0.05 1.52 7.81 -52.49 -0.41 1.11 16 9 C 0.24 6.22 3.34 -5.20 -0.02 6.20 16 10 N -0.59 -12.68 1.32 -174.98 -0.23 -12.91 16 11 C 0.12 1.99 5.64 -4.04 -0.02 1.96 16 12 C -0.11 -1.53 3.84 -89.01 -0.34 -1.87 16 13 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 14 C -0.12 -1.82 5.79 -25.58 -0.15 -1.97 16 15 C -0.13 -1.94 5.78 -25.53 -0.15 -2.09 16 16 C -0.08 -1.08 3.83 -89.34 -0.34 -1.43 16 17 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 18 C -0.12 -1.29 5.84 -25.47 -0.15 -1.44 16 19 C -0.14 -2.18 5.32 -28.13 -0.15 -2.33 16 20 C 0.52 11.14 4.71 -10.72 -0.05 11.09 16 21 O -0.55 -14.43 16.37 5.56 0.09 -14.34 16 22 H 0.27 8.20 7.22 -40.82 -0.29 7.91 16 23 H 0.02 0.51 7.91 -51.93 -0.41 0.10 16 24 H 0.03 0.90 7.29 -51.93 -0.38 0.52 16 25 H 0.06 0.92 6.40 -51.93 -0.33 0.59 16 26 H 0.08 1.39 7.87 -51.93 -0.41 0.98 16 27 H 0.08 1.49 5.75 -51.93 -0.30 1.19 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 1.36 6.04 -51.93 -0.31 1.05 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.71 7.12 -51.93 -0.37 0.34 16 33 H 0.09 1.30 8.13 -51.93 -0.42 0.88 16 34 H 0.08 1.16 6.48 -51.93 -0.34 0.83 16 LS Contribution 260.23 15.07 3.92 3.92 Total: -1.00 -33.50 260.23 -7.22 -40.72 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -4.88 Total: -1.71 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -1.79 Total: -9.36 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 0.53 Total: -40.29 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: 0.09 Total: -14.34 kcal Atomic # 14 Polarization: 26.14 SS G_CDS: -5.08 Total: 21.06 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -33.50 -7.22 -40.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885598310.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.358 kcal (2) G-P(sol) polarization free energy of solvation -33.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds