Wall clock time and date at job start Mon Mar 30 2020 02:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00153 * 2 1 4 4 H 1.48503 * 109.47245 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46926 * 59.99938 * 3 2 1 6 6 H 1.48497 * 109.47148 * 300.00100 * 3 2 1 7 7 C 1.37882 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99756 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99959 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.46883 * 177.81520 * 9 7 2 11 11 C 1.46085 * 120.23879 * 90.93274 * 10 9 7 12 12 C 1.53446 * 109.84756 * 111.11345 * 11 10 9 13 13 H 1.09001 * 112.02330 * 217.37482 * 12 11 10 14 14 C 1.54339 * 108.57838 * 340.85509 * 12 11 10 15 15 C 1.53862 * 106.49304 * 92.69502 * 14 12 11 16 16 C 1.54437 * 106.43954 * 359.78561 * 15 14 12 17 17 H 1.09002 * 111.46152 * 144.75970 * 16 15 14 18 18 C 1.54132 * 104.43680 * 23.41185 * 16 15 14 19 19 C 1.52873 * 108.23921 * 267.55745 * 16 15 14 20 20 C 1.35753 * 120.23654 * 271.20434 * 10 9 7 21 21 O 1.21274 * 120.35832 * 0.07458 * 20 10 9 22 22 H 0.96997 * 119.99638 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47026 * 297.81502 * 9 7 2 24 24 H 1.09006 * 109.46868 * 57.81688 * 9 7 2 25 25 H 1.09000 * 109.36514 * 231.30132 * 11 10 9 26 26 H 1.09004 * 109.36100 * 350.88788 * 11 10 9 27 27 H 1.09004 * 110.05756 * 333.43747 * 14 12 11 28 28 H 1.09002 * 110.05309 * 211.95009 * 14 12 11 29 29 H 1.08999 * 110.06344 * 240.53562 * 15 14 12 30 30 H 1.08997 * 110.10773 * 119.05388 * 15 14 12 31 31 H 1.09005 * 110.70450 * 80.89655 * 18 16 15 32 32 H 1.09004 * 110.71381 * 204.13282 * 18 16 15 33 33 H 1.08994 * 109.38918 * 260.94235 * 19 16 15 34 34 H 1.09006 * 109.38813 * 141.24596 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 1.2125 6 1 1.8905 2.3964 -1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2021 -3.6122 -0.0515 11 6 2.7053 -4.2082 1.1836 12 6 2.1474 -5.6289 1.3415 13 1 1.9151 -5.8638 2.3803 14 6 0.9032 -5.7717 0.4395 15 6 1.3993 -6.3370 -0.9028 16 6 2.9278 -6.5107 -0.7657 17 1 3.2793 -7.3898 -1.3058 18 6 3.1667 -6.6262 0.7526 19 6 3.6018 -5.2371 -1.2762 20 6 2.6264 -4.0934 -1.2479 21 8 2.2233 -3.6058 -2.2825 22 1 -0.4849 -0.8400 -0.0004 23 1 0.6537 -2.5738 0.9093 24 1 0.5956 -2.5403 -0.8695 25 1 3.7941 -4.2469 1.1489 26 1 2.3944 -3.5984 2.0320 27 1 0.4390 -4.7974 0.2860 28 1 0.1893 -6.4590 0.8934 29 1 1.1731 -5.6392 -1.7089 30 1 0.9297 -7.3006 -1.1000 31 1 2.9598 -7.6387 1.0994 32 1 4.1851 -6.3315 1.0062 33 1 3.9454 -5.3944 -2.2985 34 1 4.4557 -5.0002 -0.6415 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885598310.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:09 Heat of formation + Delta-G solvation = -65.751201 kcal Electronic energy + Delta-G solvation = -16340.454895 eV Core-core repulsion = 13850.657459 eV Total energy + Delta-G solvation = -2489.797436 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.15223 -38.62836 -36.68178 -34.71908 -32.49280 -30.80165 -29.25822 -26.93649 -25.76374 -24.90529 -21.83681 -20.64006 -19.37810 -18.72693 -17.92980 -17.76873 -16.89681 -16.10411 -15.67643 -15.16265 -14.63679 -14.38546 -14.22491 -13.96645 -13.85487 -13.42381 -13.17414 -12.85410 -12.53821 -12.23837 -11.98910 -11.98593 -11.87807 -11.56882 -11.38190 -11.29662 -11.16141 -10.65131 -10.60712 -9.42621 -8.72347 -6.49421 1.45898 1.56891 1.72725 1.76111 2.31483 2.51429 3.05874 3.36832 3.62031 3.70392 3.81654 4.19684 4.31560 4.37214 4.47807 4.49825 4.56079 4.65082 4.73040 4.76762 4.91080 4.95668 4.98362 5.05046 5.15861 5.18341 5.30140 5.37437 5.43776 5.63991 5.80187 6.12139 6.40842 6.69544 7.26269 7.41037 8.60841 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.043639 B = 0.008555 C = 0.008325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.469157 B = 3272.131597 C = 3362.558257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.034 4.034 3 Si 1.125 2.875 4 H -0.273 1.273 5 H -0.267 1.267 6 H -0.282 1.282 7 C -0.618 4.618 8 H 0.045 0.955 9 C 0.254 3.746 10 N -0.594 5.594 11 C 0.110 3.890 12 C -0.106 4.106 13 H 0.112 0.888 14 C -0.125 4.125 15 C -0.134 4.134 16 C -0.076 4.076 17 H 0.119 0.881 18 C -0.103 4.103 19 C -0.130 4.130 20 C 0.507 3.493 21 O -0.614 6.614 22 H 0.254 0.746 23 H 0.014 0.986 24 H -0.017 1.017 25 H 0.088 0.912 26 H 0.070 0.930 27 H 0.030 0.970 28 H 0.077 0.923 29 H 0.025 0.975 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.464 -15.824 5.150 18.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.232 4.232 3 Si 0.946 3.054 4 H -0.198 1.198 5 H -0.192 1.192 6 H -0.208 1.208 7 C -0.656 4.656 8 H 0.063 0.937 9 C 0.132 3.868 10 N -0.325 5.325 11 C -0.013 4.013 12 C -0.126 4.126 13 H 0.130 0.870 14 C -0.163 4.163 15 C -0.171 4.171 16 C -0.095 4.095 17 H 0.137 0.863 18 C -0.140 4.140 19 C -0.170 4.170 20 C 0.299 3.701 21 O -0.497 6.497 22 H 0.063 0.937 23 H 0.032 0.968 24 H 0.001 0.999 25 H 0.106 0.894 26 H 0.088 0.912 27 H 0.048 0.952 28 H 0.095 0.905 29 H 0.044 0.956 30 H 0.104 0.896 31 H 0.117 0.883 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 8.054 -13.937 4.653 16.756 hybrid contribution -0.583 -1.075 -0.420 1.293 sum 7.471 -15.012 4.233 17.294 Atomic orbital electron populations 1.70870 1.07761 1.29692 1.48497 1.27450 0.96577 1.06729 0.92451 0.82842 0.73987 0.70768 0.77803 1.19820 1.19223 1.20822 1.22626 0.94468 0.93211 1.55289 0.93698 1.18780 0.88613 0.85342 0.94115 1.48161 1.44441 1.33255 1.06615 1.21873 0.99365 0.94436 0.85621 1.22548 0.95242 0.94019 1.00748 0.87013 1.22259 0.98485 0.99855 0.95717 1.22450 0.97129 1.00715 0.96837 1.21914 0.93348 0.95847 0.98352 0.86293 1.22566 0.99157 0.99987 0.92257 1.21964 0.97523 0.92642 1.04900 1.21520 0.82033 0.84128 0.82466 1.90622 1.60822 1.63399 1.34815 0.93682 0.96784 0.99865 0.89436 0.91173 0.95161 0.90461 0.95610 0.89645 0.88339 0.88950 0.88968 0.87156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.69 13.65 21.45 0.29 -59.40 16 2 C -0.03 -2.07 5.46 84.66 0.46 -1.60 16 3 Si 1.13 52.78 29.90 68.60 2.05 54.83 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 6 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 7 C -0.62 -37.29 9.38 25.60 0.24 -37.05 16 8 H 0.04 2.71 7.81 -2.91 -0.02 2.68 16 9 C 0.25 14.18 3.34 85.63 0.29 14.47 16 10 N -0.59 -26.23 1.32 -825.35 -1.09 -27.32 16 11 C 0.11 3.47 5.64 86.61 0.49 3.96 16 12 C -0.11 -2.49 3.84 -9.75 -0.04 -2.53 16 13 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 14 C -0.13 -3.69 5.79 31.34 0.18 -3.51 16 15 C -0.13 -3.81 5.78 31.37 0.18 -3.63 16 16 C -0.08 -1.65 3.83 -9.96 -0.04 -1.69 16 17 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 18 C -0.10 -1.70 5.84 31.41 0.18 -1.52 16 19 C -0.13 -3.77 5.32 29.69 0.16 -3.61 16 20 C 0.51 22.39 4.71 87.39 0.41 22.80 16 21 O -0.61 -34.47 16.37 -3.01 -0.05 -34.52 16 22 H 0.25 16.55 7.22 -92.71 -0.67 15.88 16 23 H 0.01 0.80 7.91 -2.39 -0.02 0.78 16 24 H -0.02 -1.08 7.29 -2.38 -0.02 -1.09 16 25 H 0.09 2.32 6.40 -2.39 -0.02 2.31 16 26 H 0.07 2.35 7.87 -2.38 -0.02 2.33 16 27 H 0.03 1.18 5.75 -2.38 -0.01 1.17 16 28 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.03 0.98 6.04 -2.39 -0.01 0.97 16 30 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.09 1.22 7.12 -2.39 -0.02 1.21 16 33 H 0.09 2.58 8.13 -2.39 -0.02 2.56 16 34 H 0.11 2.61 6.48 -2.38 -0.02 2.60 16 Total: -1.00 -79.46 260.23 4.91 -74.55 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: 1.18 Total: 5.75 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: 2.52 Total: -13.90 kcal Atomic # 7 Polarization: -85.92 SS G_CDS: -0.79 Total: -86.72 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -0.05 Total: -34.52 kcal Atomic # 14 Polarization: 52.78 SS G_CDS: 2.05 Total: 54.83 kcal Total: -79.46 4.91 -74.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885598310.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.797 kcal (2) G-P(sol) polarization free energy of solvation -79.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds