Wall clock time and date at job start Mon Mar 30 2020 02:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86801 * 120.00148 * 2 1 4 4 H 1.48504 * 109.46920 * 240.00196 * 3 2 1 5 5 H 1.48504 * 109.46970 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47038 * 119.99965 * 3 2 1 7 7 C 1.40047 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00385 * 179.97438 * 7 2 1 9 9 C 1.46380 * 119.99660 * 359.97438 * 7 2 1 10 10 O 1.21683 * 120.00254 * 0.02562 * 9 7 2 11 11 N 1.34777 * 119.99540 * 179.97438 * 9 7 2 12 12 C 1.46499 * 119.99665 * 179.72460 * 11 9 7 13 13 H 1.09006 * 115.55089 * 9.55621 * 12 11 9 14 14 C 1.53001 * 117.49835 * 223.88643 * 12 11 9 15 15 C 1.52993 * 59.99913 * 252.50850 * 14 12 11 16 16 H 1.09004 * 117.50052 * 252.50630 * 15 14 12 17 17 C 1.53002 * 117.49665 * 107.48908 * 15 14 12 18 18 C 1.54267 * 110.03343 * 228.54454 * 17 15 14 19 19 C 1.54890 * 104.19560 * 217.10553 * 18 17 15 20 20 C 1.54890 * 102.74865 * 37.94298 * 19 18 17 21 21 C 1.53877 * 110.03436 * 111.37716 * 17 15 14 22 22 H 0.97004 * 119.99544 * 0.02562 * 1 2 3 23 23 H 0.97001 * 120.00485 * 0.02562 * 11 9 7 24 24 H 1.08993 * 117.50106 * 0.02562 * 14 12 11 25 25 H 1.09008 * 117.49911 * 145.02103 * 14 12 11 26 26 H 1.09001 * 110.01851 * 349.98515 * 17 15 14 27 27 H 1.08996 * 110.48525 * 335.78315 * 18 17 15 28 28 H 1.08997 * 110.48740 * 98.42418 * 18 17 15 29 29 H 1.09003 * 110.75551 * 279.62403 * 19 18 17 30 30 H 1.09002 * 110.75365 * 156.26021 * 19 18 17 31 31 H 1.09007 * 110.48159 * 203.37804 * 20 19 18 32 32 H 1.08996 * 110.48594 * 80.73934 * 20 19 18 33 33 H 1.09002 * 110.03318 * 238.57002 * 21 17 15 34 34 H 1.09006 * 110.03136 * 359.97438 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0945 1.6963 -1.2126 5 1 1.2758 2.7465 -0.0006 6 1 3.0945 1.6963 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0582 -2.4805 -0.0005 11 7 1.9489 -3.6477 -0.0016 12 6 1.2164 -4.9164 0.0045 13 1 0.1406 -4.8389 -0.1536 14 6 1.7149 -6.0154 0.9450 15 6 1.9277 -6.1456 -0.5644 16 1 1.3201 -6.8772 -1.0972 17 6 3.3498 -5.9558 -1.0962 18 6 3.3412 -4.9806 -2.2915 19 6 4.4070 -5.5546 -3.2577 20 6 4.2035 -7.0840 -3.1215 21 6 3.8981 -7.2932 -1.6240 22 1 -0.4850 0.8401 -0.0004 23 1 2.9189 -3.6477 -0.0020 24 1 2.5875 -5.7944 1.5595 25 1 0.9671 -6.6613 1.4054 26 1 3.9957 -5.5732 -0.3060 27 1 2.3609 -4.9697 -2.7679 28 1 3.6202 -3.9779 -1.9678 29 1 5.4099 -5.2686 -2.9406 30 1 4.2166 -5.2291 -4.2804 31 1 5.1120 -7.6163 -3.4036 32 1 3.3625 -7.4128 -3.7320 33 1 4.8106 -7.5592 -1.0904 34 1 3.1513 -8.0776 -1.5008 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885598323.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:55 Heat of formation + Delta-G solvation = -38.323805 kcal Electronic energy + Delta-G solvation = -15359.682892 eV Core-core repulsion = 12871.074798 eV Total energy + Delta-G solvation = -2488.608095 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.04002 -37.01721 -35.37642 -32.51210 -31.11272 -28.45179 -28.34682 -26.21098 -21.75385 -21.49822 -20.35972 -19.98970 -18.60762 -17.33106 -15.67847 -15.52556 -15.07973 -14.30412 -14.14080 -13.54585 -13.14046 -12.78803 -12.56081 -12.28111 -11.59038 -11.36927 -11.13655 -11.04307 -10.99283 -10.87700 -10.74005 -10.50361 -10.45312 -10.27389 -10.19713 -9.97338 -9.37283 -8.83158 -7.62422 -7.28557 -6.18827 -4.64569 3.15876 3.20772 3.22614 4.09825 4.25474 4.62352 4.73045 4.80480 4.87174 4.96801 5.29879 5.49872 5.57095 5.64288 5.72614 5.81268 5.85662 5.91092 5.93607 6.01196 6.07035 6.11113 6.19940 6.26990 6.44308 6.58478 6.63840 6.65151 6.73486 7.42926 7.91998 8.12075 8.33811 9.01965 9.53463 10.60058 10.78455 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.033921 B = 0.007141 C = 0.006271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.257062 B = 3920.293456 C = 4464.276562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.088 3.912 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.557 3.443 10 O -0.580 6.580 11 N -0.732 5.732 12 C 0.120 3.880 13 H 0.124 0.876 14 C -0.209 4.209 15 C -0.170 4.170 16 H 0.099 0.901 17 C -0.056 4.056 18 C -0.113 4.113 19 C -0.127 4.127 20 C -0.124 4.124 21 C -0.116 4.116 22 H 0.269 0.731 23 H 0.381 0.619 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.375 -10.595 -3.454 13.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.582 4.582 8 H 0.085 0.915 9 C 0.361 3.639 10 O -0.463 6.463 11 N -0.383 5.383 12 C 0.011 3.989 13 H 0.142 0.858 14 C -0.248 4.248 15 C -0.190 4.190 16 H 0.117 0.883 17 C -0.075 4.075 18 C -0.151 4.151 19 C -0.165 4.165 20 C -0.162 4.162 21 C -0.154 4.154 22 H 0.080 0.920 23 H 0.214 0.786 24 H 0.106 0.894 25 H 0.106 0.894 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.281 -10.432 -3.452 13.181 hybrid contribution 0.954 0.641 0.114 1.155 sum 8.235 -9.790 -3.338 13.221 Atomic orbital electron populations 1.70012 1.07049 1.27380 1.35150 1.25694 0.94610 1.00248 0.92614 0.86441 0.79833 0.81072 0.79444 1.19278 1.20535 1.19288 1.20828 0.93513 0.89358 1.54493 0.91517 1.18223 0.87230 0.82287 0.76147 1.90589 1.14113 1.86707 1.54859 1.45675 1.08149 1.03791 1.80723 1.21277 0.97057 0.81081 0.99497 0.85811 1.23521 1.03746 1.05242 0.92312 1.22892 0.97454 1.03002 0.95671 0.88299 1.21230 0.93983 0.94925 0.97370 1.22384 0.98991 0.98699 0.95010 1.22531 0.99305 0.95107 0.99555 1.22357 1.00683 0.96572 0.96551 1.22195 1.00293 0.97460 0.95455 0.92034 0.78632 0.89382 0.89399 0.91485 0.91328 0.91018 0.91866 0.91953 0.92343 0.91943 0.92361 0.91887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.08 11.83 55.55 0.66 -22.42 16 2 C 0.09 2.47 5.50 -17.37 -0.10 2.37 16 3 Si 0.91 20.16 29.56 -169.99 -5.02 15.13 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 7 C -0.55 -15.38 9.54 -35.63 -0.34 -15.72 16 8 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 9 C 0.56 15.85 7.75 -12.98 -0.10 15.75 16 10 O -0.58 -18.83 14.59 5.20 0.08 -18.75 16 11 N -0.73 -16.40 4.63 -55.21 -0.26 -16.66 16 12 C 0.12 2.35 6.26 -67.93 -0.43 1.93 16 13 H 0.12 2.73 7.40 -51.93 -0.38 2.34 16 14 C -0.21 -3.33 10.11 -26.73 -0.27 -3.60 16 15 C -0.17 -2.61 4.83 -90.62 -0.44 -3.05 16 16 H 0.10 1.41 7.93 -51.93 -0.41 1.00 16 17 C -0.06 -0.79 2.38 -89.50 -0.21 -1.00 16 18 C -0.11 -1.68 5.39 -25.07 -0.14 -1.81 16 19 C -0.13 -1.55 6.91 -24.74 -0.17 -1.72 16 20 C -0.12 -1.37 6.83 -25.07 -0.17 -1.54 16 21 C -0.12 -1.36 6.46 -25.61 -0.17 -1.52 16 22 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 23 H 0.38 7.67 6.73 -40.82 -0.27 7.40 16 24 H 0.09 1.38 8.07 -51.93 -0.42 0.96 16 25 H 0.09 1.28 8.14 -51.92 -0.42 0.85 16 26 H 0.07 0.95 7.60 -51.93 -0.39 0.56 16 27 H 0.07 1.13 7.85 -51.93 -0.41 0.72 16 28 H 0.07 1.17 7.19 -51.93 -0.37 0.80 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.71 7.54 -51.93 -0.39 0.32 16 LS Contribution 279.20 15.07 4.21 4.21 Total: -1.00 -32.39 279.20 -8.01 -40.39 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -5.14 Total: 8.02 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -2.53 Total: -9.92 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.40 Total: -39.08 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: 0.08 Total: -18.75 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -32.39 -8.01 -40.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885598323.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.069 kcal (2) G-P(sol) polarization free energy of solvation -32.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds