Wall clock time and date at job start Mon Mar 30 2020 02:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86801 * 120.00148 * 2 1 4 4 H 1.48504 * 109.46920 * 240.00196 * 3 2 1 5 5 H 1.48504 * 109.46970 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47038 * 119.99965 * 3 2 1 7 7 C 1.40047 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00385 * 179.97438 * 7 2 1 9 9 C 1.46380 * 119.99660 * 359.97438 * 7 2 1 10 10 O 1.21683 * 120.00254 * 0.02562 * 9 7 2 11 11 N 1.34777 * 119.99540 * 179.97438 * 9 7 2 12 12 C 1.46499 * 119.99665 * 179.72460 * 11 9 7 13 13 H 1.09006 * 115.55089 * 9.55621 * 12 11 9 14 14 C 1.53001 * 117.49835 * 223.88643 * 12 11 9 15 15 C 1.52993 * 59.99913 * 252.50850 * 14 12 11 16 16 H 1.09004 * 117.50052 * 252.50630 * 15 14 12 17 17 C 1.53002 * 117.49665 * 107.48908 * 15 14 12 18 18 C 1.54267 * 110.03343 * 228.54454 * 17 15 14 19 19 C 1.54890 * 104.19560 * 217.10553 * 18 17 15 20 20 C 1.54890 * 102.74865 * 37.94298 * 19 18 17 21 21 C 1.53877 * 110.03436 * 111.37716 * 17 15 14 22 22 H 0.97004 * 119.99544 * 0.02562 * 1 2 3 23 23 H 0.97001 * 120.00485 * 0.02562 * 11 9 7 24 24 H 1.08993 * 117.50106 * 0.02562 * 14 12 11 25 25 H 1.09008 * 117.49911 * 145.02103 * 14 12 11 26 26 H 1.09001 * 110.01851 * 349.98515 * 17 15 14 27 27 H 1.08996 * 110.48525 * 335.78315 * 18 17 15 28 28 H 1.08997 * 110.48740 * 98.42418 * 18 17 15 29 29 H 1.09003 * 110.75551 * 279.62403 * 19 18 17 30 30 H 1.09002 * 110.75365 * 156.26021 * 19 18 17 31 31 H 1.09007 * 110.48159 * 203.37804 * 20 19 18 32 32 H 1.08996 * 110.48594 * 80.73934 * 20 19 18 33 33 H 1.09002 * 110.03318 * 238.57002 * 21 17 15 34 34 H 1.09006 * 110.03136 * 359.97438 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0945 1.6963 -1.2126 5 1 1.2758 2.7465 -0.0006 6 1 3.0945 1.6963 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0582 -2.4805 -0.0005 11 7 1.9489 -3.6477 -0.0016 12 6 1.2164 -4.9164 0.0045 13 1 0.1406 -4.8389 -0.1536 14 6 1.7149 -6.0154 0.9450 15 6 1.9277 -6.1456 -0.5644 16 1 1.3201 -6.8772 -1.0972 17 6 3.3498 -5.9558 -1.0962 18 6 3.3412 -4.9806 -2.2915 19 6 4.4070 -5.5546 -3.2577 20 6 4.2035 -7.0840 -3.1215 21 6 3.8981 -7.2932 -1.6240 22 1 -0.4850 0.8401 -0.0004 23 1 2.9189 -3.6477 -0.0020 24 1 2.5875 -5.7944 1.5595 25 1 0.9671 -6.6613 1.4054 26 1 3.9957 -5.5732 -0.3060 27 1 2.3609 -4.9697 -2.7679 28 1 3.6202 -3.9779 -1.9678 29 1 5.4099 -5.2686 -2.9406 30 1 4.2166 -5.2291 -4.2804 31 1 5.1120 -7.6163 -3.4036 32 1 3.3625 -7.4128 -3.7320 33 1 4.8106 -7.5592 -1.0904 34 1 3.1513 -8.0776 -1.5008 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885598323.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:55 Heat of formation + Delta-G solvation = -59.181911 kcal Electronic energy + Delta-G solvation = -15360.587367 eV Core-core repulsion = 12871.074798 eV Total energy + Delta-G solvation = -2489.512570 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.44224 -38.79795 -36.88734 -34.65052 -33.04202 -29.54067 -29.42515 -28.31763 -23.38742 -22.81359 -21.66858 -21.36388 -20.01098 -19.29234 -17.56998 -16.92892 -16.55872 -15.89460 -15.42716 -15.12463 -14.62007 -14.51369 -14.13845 -13.82119 -13.11131 -12.90126 -12.82166 -12.64874 -12.50157 -12.14897 -12.05547 -11.89530 -11.82012 -11.52855 -11.43103 -11.29656 -10.91267 -10.73471 -9.87930 -9.10863 -8.29872 -6.86374 1.39140 1.42765 1.54512 2.23837 2.42496 2.96065 3.04680 3.63728 3.66521 3.79993 3.93194 4.08842 4.26354 4.30451 4.55475 4.64591 4.68996 4.79617 4.87381 4.91446 4.92648 5.00713 5.11934 5.14352 5.27628 5.30402 5.39012 5.45892 5.54572 5.57680 5.87442 6.21854 6.33525 6.85579 7.54740 8.49447 8.67104 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.033921 B = 0.007141 C = 0.006271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.257062 B = 3920.293456 C = 4464.276562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.029 3.971 3 Si 0.997 3.003 4 H -0.254 1.254 5 H -0.274 1.274 6 H -0.254 1.254 7 C -0.574 4.574 8 H 0.086 0.914 9 C 0.540 3.460 10 O -0.634 6.634 11 N -0.717 5.717 12 C 0.068 3.932 13 H 0.089 0.911 14 C -0.184 4.184 15 C -0.138 4.138 16 H 0.115 0.885 17 C -0.058 4.058 18 C -0.116 4.116 19 C -0.124 4.124 20 C -0.120 4.120 21 C -0.111 4.111 22 H 0.275 0.725 23 H 0.393 0.607 24 H 0.097 0.903 25 H 0.106 0.894 26 H 0.067 0.933 27 H 0.044 0.956 28 H 0.048 0.952 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.989 -11.523 -3.577 16.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.186 4.186 3 Si 0.816 3.184 4 H -0.178 1.178 5 H -0.198 1.198 6 H -0.178 1.178 7 C -0.610 4.610 8 H 0.104 0.896 9 C 0.345 3.655 10 O -0.521 6.521 11 N -0.368 5.368 12 C -0.040 4.040 13 H 0.107 0.893 14 C -0.223 4.223 15 C -0.157 4.157 16 H 0.133 0.867 17 C -0.076 4.076 18 C -0.154 4.154 19 C -0.161 4.161 20 C -0.157 4.157 21 C -0.148 4.148 22 H 0.084 0.916 23 H 0.228 0.772 24 H 0.115 0.885 25 H 0.125 0.875 26 H 0.086 0.914 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.941 -11.427 -3.575 15.562 hybrid contribution 0.119 0.838 0.145 0.859 sum 10.060 -10.589 -3.430 15.003 Atomic orbital electron populations 1.70190 1.09556 1.29007 1.36396 1.26974 0.95517 1.04942 0.91168 0.85081 0.78232 0.74724 0.80315 1.17810 1.19828 1.17771 1.21375 0.94635 0.90078 1.54913 0.89582 1.18595 0.86832 0.84219 0.75855 1.90538 1.16298 1.87869 1.57401 1.45196 1.08496 1.03556 1.79591 1.21309 0.95759 0.81490 1.05422 0.89325 1.23571 1.03835 1.02045 0.92811 1.22983 0.97871 0.99254 0.95618 0.86725 1.21291 0.92950 0.96427 0.96958 1.22335 0.98745 0.98120 0.96235 1.22520 0.98631 0.96104 0.98848 1.22355 1.01792 0.95437 0.96153 1.22166 1.01099 0.95724 0.95840 0.91551 0.77249 0.88483 0.87526 0.91428 0.93730 0.93296 0.90869 0.91720 0.90204 0.91871 0.90751 0.91037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.21 11.83 21.84 0.26 -50.95 16 2 C 0.03 1.65 5.50 85.30 0.47 2.12 16 3 Si 1.00 41.39 29.56 68.60 2.03 43.41 16 4 H -0.25 -9.90 7.11 99.48 0.71 -9.20 16 5 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 6 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 7 C -0.57 -33.08 9.54 24.83 0.24 -32.84 16 8 H 0.09 4.44 7.85 -2.91 -0.02 4.42 16 9 C 0.54 32.16 7.75 86.36 0.67 32.83 16 10 O -0.63 -43.61 14.59 -4.29 -0.06 -43.67 16 11 N -0.72 -33.20 4.63 -446.82 -2.07 -35.27 16 12 C 0.07 2.73 6.26 44.99 0.28 3.02 16 13 H 0.09 4.19 7.40 -2.38 -0.02 4.17 16 14 C -0.18 -5.57 10.11 30.59 0.31 -5.26 16 15 C -0.14 -4.03 4.83 -10.80 -0.05 -4.09 16 16 H 0.11 3.04 7.93 -2.38 -0.02 3.02 16 17 C -0.06 -1.49 2.38 -10.07 -0.02 -1.52 16 18 C -0.12 -3.41 5.39 31.67 0.17 -3.24 16 19 C -0.12 -2.76 6.91 31.89 0.22 -2.54 16 20 C -0.12 -2.24 6.83 31.67 0.22 -2.02 16 21 C -0.11 -2.18 6.46 31.32 0.20 -1.98 16 22 H 0.27 15.49 8.29 -92.71 -0.77 14.73 16 23 H 0.39 16.05 6.73 -92.71 -0.62 15.43 16 24 H 0.10 2.81 8.07 -2.39 -0.02 2.79 16 25 H 0.11 2.86 8.14 -2.38 -0.02 2.84 16 26 H 0.07 1.77 7.60 -2.39 -0.02 1.75 16 27 H 0.04 1.49 7.85 -2.39 -0.02 1.47 16 28 H 0.05 1.62 7.19 -2.39 -0.02 1.60 16 29 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 34 H 0.07 1.32 7.54 -2.38 -0.02 1.30 16 Total: -1.00 -73.94 279.20 3.31 -70.63 By element: Atomic # 1 Polarization: 30.93 SS G_CDS: 0.46 Total: 31.39 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: 2.70 Total: -15.54 kcal Atomic # 7 Polarization: -84.41 SS G_CDS: -1.81 Total: -86.22 kcal Atomic # 8 Polarization: -43.61 SS G_CDS: -0.06 Total: -43.67 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.41 kcal Total: -73.94 3.31 -70.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885598323.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.445 kcal (2) G-P(sol) polarization free energy of solvation -73.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds