Wall clock time and date at job start Mon Mar 30 2020 02:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86798 * 119.99669 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00154 * 3 2 1 5 5 H 1.48506 * 109.46545 * 209.99904 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99615 * 3 2 1 7 7 C 1.40045 * 119.99799 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99951 * 179.97438 * 7 2 1 9 9 C 1.46373 * 120.00438 * 0.02562 * 7 2 1 10 10 O 1.21683 * 119.99846 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00143 * 179.97438 * 9 7 2 12 12 C 1.46499 * 120.00195 * 179.97438 * 11 9 7 13 13 H 1.09006 * 115.54829 * 350.67514 * 12 11 9 14 14 C 1.53001 * 117.50078 * 136.38052 * 12 11 9 15 15 C 1.52995 * 59.99914 * 107.49479 * 14 12 11 16 16 H 1.08999 * 117.50298 * 107.49291 * 15 14 12 17 17 C 1.53005 * 117.51674 * 252.52197 * 15 14 12 18 18 C 1.54268 * 110.03202 * 246.53970 * 17 15 14 19 19 C 1.54962 * 104.15967 * 217.13902 * 18 17 15 20 20 C 1.54884 * 102.78003 * 37.88182 * 19 18 17 21 21 C 1.53878 * 110.03276 * 129.32073 * 17 15 14 22 22 H 0.96996 * 120.00331 * 0.02562 * 1 2 3 23 23 H 0.97000 * 120.00327 * 0.02562 * 11 9 7 24 24 H 1.08999 * 117.49995 * 214.98345 * 14 12 11 25 25 H 1.09002 * 117.49285 * 0.02562 * 14 12 11 26 26 H 1.08994 * 110.01593 * 7.92678 * 17 15 14 27 27 H 1.09000 * 110.48418 * 335.77740 * 18 17 15 28 28 H 1.08991 * 110.49032 * 98.42332 * 18 17 15 29 29 H 1.09004 * 110.71477 * 279.56940 * 19 18 17 30 30 H 1.08996 * 110.92801 * 156.29522 * 19 18 17 31 31 H 1.09002 * 110.48894 * 203.40538 * 20 19 18 32 32 H 1.09010 * 110.48670 * 80.76700 * 20 19 18 33 33 H 1.09000 * 110.02843 * 238.56968 * 21 17 15 34 34 H 1.08994 * 110.02970 * 0.02562 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.4882 2.0465 1.4000 5 1 3.5382 1.4401 -0.7001 6 1 1.4381 2.6526 -0.7001 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0583 -2.4805 0.0005 11 7 1.9490 -3.6477 0.0005 12 6 1.2166 -4.9165 0.0011 13 1 0.1411 -4.8384 0.1609 14 6 1.7139 -6.0197 -0.9351 15 6 1.9287 -6.1431 0.5747 16 1 1.3218 -6.8722 1.1115 17 6 3.3512 -5.9507 1.1044 18 6 3.8822 -7.2770 1.6864 19 6 4.7145 -6.8435 2.9196 20 6 3.8813 -5.6747 3.5015 21 6 3.3509 -4.9321 2.2578 22 1 -0.4850 0.8400 -0.0004 23 1 2.9190 -3.6477 0.0009 24 1 0.9656 -6.6676 -1.3916 25 1 2.5863 -5.8016 -1.5511 26 1 4.0045 -5.6067 0.3026 27 1 3.0551 -7.9182 1.9910 28 1 4.5138 -7.7870 0.9591 29 1 5.7032 -6.4994 2.6159 30 1 4.7949 -7.6570 3.6405 31 1 4.5125 -5.0164 4.0985 32 1 3.0538 -6.0567 4.0995 33 1 4.0048 -4.0942 2.0160 34 1 2.3373 -4.5752 2.4404 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885598324.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:57 Heat of formation + Delta-G solvation = -38.533850 kcal Electronic energy + Delta-G solvation = -15372.654678 eV Core-core repulsion = 12884.037475 eV Total energy + Delta-G solvation = -2488.617203 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.05405 -37.00562 -35.37181 -32.51337 -31.10564 -28.43972 -28.33944 -26.21444 -21.69577 -21.53807 -20.57337 -19.83429 -18.57634 -17.24466 -15.61766 -15.57681 -15.09985 -14.42064 -14.16493 -13.54147 -13.13359 -12.73899 -12.54264 -12.17955 -11.59162 -11.45997 -11.11497 -11.08127 -10.95115 -10.85569 -10.78587 -10.56897 -10.46922 -10.23342 -10.11349 -9.94999 -9.38177 -8.83932 -7.62330 -7.28856 -6.19086 -4.64539 3.14052 3.20930 3.24279 4.09728 4.25221 4.62773 4.71806 4.80311 4.86254 4.98407 5.32924 5.49773 5.55606 5.67143 5.73098 5.79163 5.87077 5.88737 5.93639 5.98979 6.08490 6.11972 6.20197 6.30172 6.42274 6.59632 6.64543 6.65842 6.76480 7.43017 7.92252 8.12162 8.34055 9.02042 9.53480 10.59877 10.78331 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.033565 B = 0.007178 C = 0.006317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.011235 B = 3899.908983 C = 4431.548102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.265 1.265 6 H -0.279 1.279 7 C -0.544 4.544 8 H 0.067 0.933 9 C 0.556 3.444 10 O -0.580 6.580 11 N -0.731 5.731 12 C 0.119 3.881 13 H 0.124 0.876 14 C -0.208 4.208 15 C -0.170 4.170 16 H 0.099 0.901 17 C -0.056 4.056 18 C -0.115 4.115 19 C -0.126 4.126 20 C -0.125 4.125 21 C -0.117 4.117 22 H 0.268 0.732 23 H 0.381 0.619 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.369 -10.599 3.484 13.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.189 1.189 6 H -0.204 1.204 7 C -0.581 4.581 8 H 0.085 0.915 9 C 0.361 3.639 10 O -0.463 6.463 11 N -0.383 5.383 12 C 0.010 3.990 13 H 0.142 0.858 14 C -0.248 4.248 15 C -0.190 4.190 16 H 0.117 0.883 17 C -0.075 4.075 18 C -0.153 4.153 19 C -0.163 4.163 20 C -0.162 4.162 21 C -0.154 4.154 22 H 0.079 0.921 23 H 0.214 0.786 24 H 0.106 0.894 25 H 0.106 0.894 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.277 -10.429 3.478 13.183 hybrid contribution 0.950 0.675 -0.099 1.169 sum 8.227 -9.754 3.378 13.200 Atomic orbital electron populations 1.70019 1.07050 1.27277 1.35248 1.25696 0.94608 1.00263 0.92615 0.86381 0.80160 0.81435 0.78836 1.19728 1.18926 1.20441 1.20861 0.93546 0.89338 1.54368 0.91477 1.18230 0.87228 0.82299 0.76153 1.90590 1.14116 1.86713 1.54860 1.45661 1.08176 1.03768 1.80705 1.21282 0.97058 0.81083 0.99556 0.85804 1.23522 1.03737 1.05173 0.92355 1.22900 0.97454 1.03058 0.95637 0.88297 1.21230 0.94004 0.94920 0.97338 1.22422 0.99020 0.97040 0.96785 1.22512 0.98653 0.97933 0.97228 1.22375 0.99023 0.96999 0.97846 1.22199 1.02423 0.97334 0.93487 0.92093 0.78626 0.89396 0.89385 0.91484 0.91712 0.92188 0.91841 0.92182 0.92120 0.92037 0.91828 0.90649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.08 11.83 55.55 0.66 -22.42 16 2 C 0.09 2.46 5.50 -17.37 -0.10 2.36 16 3 Si 0.91 20.17 29.56 -169.99 -5.02 15.15 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 5 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.54 -15.37 9.54 -35.63 -0.34 -15.71 16 8 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 9 C 0.56 15.84 7.75 -12.99 -0.10 15.74 16 10 O -0.58 -18.82 14.59 5.20 0.08 -18.75 16 11 N -0.73 -16.40 4.53 -55.22 -0.25 -16.65 16 12 C 0.12 2.34 5.98 -67.93 -0.41 1.93 16 13 H 0.12 2.72 7.40 -51.93 -0.38 2.34 16 14 C -0.21 -3.32 10.11 -26.73 -0.27 -3.59 16 15 C -0.17 -2.61 4.99 -90.62 -0.45 -3.06 16 16 H 0.10 1.41 7.81 -51.93 -0.41 1.01 16 17 C -0.06 -0.78 2.41 -89.50 -0.22 -1.00 16 18 C -0.12 -1.34 6.37 -25.03 -0.16 -1.50 16 19 C -0.13 -1.37 6.91 -24.70 -0.17 -1.54 16 20 C -0.12 -1.55 6.83 -25.08 -0.17 -1.72 16 21 C -0.12 -1.74 5.07 -25.61 -0.13 -1.87 16 22 H 0.27 7.31 8.29 -40.82 -0.34 6.98 16 23 H 0.38 7.70 7.14 -40.82 -0.29 7.41 16 24 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 25 H 0.09 1.38 8.06 -51.93 -0.42 0.96 16 26 H 0.07 0.95 7.68 -51.93 -0.40 0.55 16 27 H 0.06 0.73 7.64 -51.93 -0.40 0.34 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 33 H 0.06 0.98 8.04 -51.93 -0.42 0.56 16 34 H 0.07 1.33 7.18 -51.93 -0.37 0.96 16 LS Contribution 279.21 15.07 4.21 4.21 Total: -1.00 -32.39 279.21 -8.01 -40.40 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -5.17 Total: 8.03 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -2.51 Total: -9.97 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.41 Total: -39.07 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: 0.08 Total: -18.75 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -32.39 -8.01 -40.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885598324.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.871 kcal (2) G-P(sol) polarization free energy of solvation -32.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds