Wall clock time and date at job start Mon Mar 30 2020 02:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86798 * 119.99669 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00154 * 3 2 1 5 5 H 1.48506 * 109.46545 * 209.99904 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99615 * 3 2 1 7 7 C 1.40045 * 119.99799 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99951 * 179.97438 * 7 2 1 9 9 C 1.46373 * 120.00438 * 0.02562 * 7 2 1 10 10 O 1.21683 * 119.99846 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00143 * 179.97438 * 9 7 2 12 12 C 1.46499 * 120.00195 * 179.97438 * 11 9 7 13 13 H 1.09006 * 115.54829 * 350.67514 * 12 11 9 14 14 C 1.53001 * 117.50078 * 136.38052 * 12 11 9 15 15 C 1.52995 * 59.99914 * 107.49479 * 14 12 11 16 16 H 1.08999 * 117.50298 * 107.49291 * 15 14 12 17 17 C 1.53005 * 117.51674 * 252.52197 * 15 14 12 18 18 C 1.54268 * 110.03202 * 246.53970 * 17 15 14 19 19 C 1.54962 * 104.15967 * 217.13902 * 18 17 15 20 20 C 1.54884 * 102.78003 * 37.88182 * 19 18 17 21 21 C 1.53878 * 110.03276 * 129.32073 * 17 15 14 22 22 H 0.96996 * 120.00331 * 0.02562 * 1 2 3 23 23 H 0.97000 * 120.00327 * 0.02562 * 11 9 7 24 24 H 1.08999 * 117.49995 * 214.98345 * 14 12 11 25 25 H 1.09002 * 117.49285 * 0.02562 * 14 12 11 26 26 H 1.08994 * 110.01593 * 7.92678 * 17 15 14 27 27 H 1.09000 * 110.48418 * 335.77740 * 18 17 15 28 28 H 1.08991 * 110.49032 * 98.42332 * 18 17 15 29 29 H 1.09004 * 110.71477 * 279.56940 * 19 18 17 30 30 H 1.08996 * 110.92801 * 156.29522 * 19 18 17 31 31 H 1.09002 * 110.48894 * 203.40538 * 20 19 18 32 32 H 1.09010 * 110.48670 * 80.76700 * 20 19 18 33 33 H 1.09000 * 110.02843 * 238.56968 * 21 17 15 34 34 H 1.08994 * 110.02970 * 0.02562 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.4882 2.0465 1.4000 5 1 3.5382 1.4401 -0.7001 6 1 1.4381 2.6526 -0.7001 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0583 -2.4805 0.0005 11 7 1.9490 -3.6477 0.0005 12 6 1.2166 -4.9165 0.0011 13 1 0.1411 -4.8384 0.1609 14 6 1.7139 -6.0197 -0.9351 15 6 1.9287 -6.1431 0.5747 16 1 1.3218 -6.8722 1.1115 17 6 3.3512 -5.9507 1.1044 18 6 3.8822 -7.2770 1.6864 19 6 4.7145 -6.8435 2.9196 20 6 3.8813 -5.6747 3.5015 21 6 3.3509 -4.9321 2.2578 22 1 -0.4850 0.8400 -0.0004 23 1 2.9190 -3.6477 0.0009 24 1 0.9656 -6.6676 -1.3916 25 1 2.5863 -5.8016 -1.5511 26 1 4.0045 -5.6067 0.3026 27 1 3.0551 -7.9182 1.9910 28 1 4.5138 -7.7870 0.9591 29 1 5.7032 -6.4994 2.6159 30 1 4.7949 -7.6570 3.6405 31 1 4.5125 -5.0164 4.0985 32 1 3.0538 -6.0567 4.0995 33 1 4.0048 -4.0942 2.0160 34 1 2.3373 -4.5752 2.4404 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885598324.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:57 Heat of formation + Delta-G solvation = -59.436165 kcal Electronic energy + Delta-G solvation = -15373.561070 eV Core-core repulsion = 12884.037475 eV Total energy + Delta-G solvation = -2489.523595 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.45967 -38.79105 -36.87871 -34.65353 -33.03717 -29.53879 -29.41731 -28.32383 -23.38896 -22.82041 -21.72433 -21.35347 -20.00106 -19.21823 -17.56906 -16.83370 -16.56269 -16.00876 -15.52603 -15.12466 -14.65502 -14.52216 -14.13425 -13.65563 -13.06067 -12.89768 -12.84787 -12.66959 -12.59756 -12.15385 -12.02890 -11.88832 -11.84787 -11.49264 -11.42574 -11.25517 -10.92764 -10.75704 -9.87912 -9.11286 -8.30288 -6.86541 1.38993 1.40676 1.55980 2.23535 2.42148 2.95833 3.04624 3.64158 3.66112 3.78957 3.92914 4.11097 4.25782 4.29084 4.56445 4.64803 4.70813 4.77864 4.87347 4.91123 4.92512 5.01707 5.11759 5.16477 5.27473 5.30378 5.38519 5.47403 5.52313 5.59435 5.87410 6.21732 6.33450 6.85449 7.54637 8.49247 8.66938 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.033565 B = 0.007178 C = 0.006317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.011235 B = 3899.908983 C = 4431.548102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.029 3.971 3 Si 0.998 3.002 4 H -0.261 1.261 5 H -0.249 1.249 6 H -0.272 1.272 7 C -0.573 4.573 8 H 0.086 0.914 9 C 0.540 3.460 10 O -0.634 6.634 11 N -0.717 5.717 12 C 0.067 3.933 13 H 0.089 0.911 14 C -0.183 4.183 15 C -0.138 4.138 16 H 0.115 0.885 17 C -0.058 4.058 18 C -0.109 4.109 19 C -0.119 4.119 20 C -0.124 4.124 21 C -0.118 4.118 22 H 0.275 0.725 23 H 0.393 0.607 24 H 0.106 0.894 25 H 0.097 0.903 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.993 -11.560 3.623 16.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.186 4.186 3 Si 0.817 3.183 4 H -0.186 1.186 5 H -0.172 1.172 6 H -0.197 1.197 7 C -0.609 4.609 8 H 0.104 0.896 9 C 0.345 3.655 10 O -0.521 6.521 11 N -0.368 5.368 12 C -0.040 4.040 13 H 0.107 0.893 14 C -0.222 4.222 15 C -0.157 4.157 16 H 0.133 0.867 17 C -0.076 4.076 18 C -0.147 4.147 19 C -0.156 4.156 20 C -0.161 4.161 21 C -0.156 4.156 22 H 0.084 0.916 23 H 0.227 0.773 24 H 0.125 0.875 25 H 0.115 0.885 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 9.947 -11.457 3.617 15.597 hybrid contribution 0.107 0.885 -0.130 0.901 sum 10.054 -10.571 3.486 15.000 Atomic orbital electron populations 1.70191 1.09557 1.28951 1.36465 1.26975 0.95518 1.04950 0.91177 0.85023 0.78786 0.75054 0.79457 1.18572 1.17191 1.19702 1.21397 0.94622 0.90067 1.54819 0.89610 1.18598 0.86830 0.84226 0.75856 1.90538 1.16299 1.87872 1.57399 1.45176 1.08495 1.03548 1.79571 1.21308 0.95752 0.81485 1.05475 0.89341 1.23574 1.03833 1.01962 0.92856 1.22983 0.97858 0.99302 0.95588 0.86718 1.21295 0.92979 0.96368 0.97000 1.22402 0.99541 0.95406 0.97318 1.22497 0.98392 0.97569 0.97142 1.22371 0.99440 0.97632 0.96680 1.22150 1.00092 0.97779 0.95583 0.91555 0.77281 0.87520 0.88471 0.91362 0.91088 0.90490 0.91097 0.90231 0.91576 0.92001 0.92829 0.94334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.23 11.83 21.83 0.26 -50.97 16 2 C 0.03 1.63 5.50 85.30 0.47 2.10 16 3 Si 1.00 41.45 29.56 68.60 2.03 43.48 16 4 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 5 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 6 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 7 C -0.57 -33.06 9.54 24.83 0.24 -32.83 16 8 H 0.09 4.45 7.85 -2.91 -0.02 4.42 16 9 C 0.54 32.18 7.75 86.36 0.67 32.85 16 10 O -0.63 -43.64 14.59 -4.29 -0.06 -43.70 16 11 N -0.72 -33.23 4.53 -446.83 -2.02 -35.25 16 12 C 0.07 2.72 5.98 44.99 0.27 2.99 16 13 H 0.09 4.19 7.40 -2.38 -0.02 4.17 16 14 C -0.18 -5.56 10.11 30.59 0.31 -5.25 16 15 C -0.14 -4.04 4.99 -10.80 -0.05 -4.09 16 16 H 0.11 3.04 7.81 -2.39 -0.02 3.02 16 17 C -0.06 -1.50 2.41 -10.07 -0.02 -1.52 16 18 C -0.11 -2.14 6.37 31.69 0.20 -1.94 16 19 C -0.12 -2.17 6.91 31.91 0.22 -1.95 16 20 C -0.12 -2.86 6.83 31.67 0.22 -2.64 16 21 C -0.12 -3.49 5.07 31.32 0.16 -3.33 16 22 H 0.27 15.46 8.29 -92.71 -0.77 14.69 16 23 H 0.39 16.09 7.14 -92.71 -0.66 15.43 16 24 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 25 H 0.10 2.81 8.06 -2.39 -0.02 2.79 16 26 H 0.07 1.77 7.68 -2.39 -0.02 1.75 16 27 H 0.07 1.33 7.64 -2.39 -0.02 1.31 16 28 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.05 1.65 8.04 -2.39 -0.02 1.63 16 34 H 0.04 1.40 7.18 -2.39 -0.02 1.39 16 Total: -1.00 -74.11 279.21 3.29 -70.81 By element: Atomic # 1 Polarization: 30.81 SS G_CDS: 0.42 Total: 31.23 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: 2.67 Total: -15.60 kcal Atomic # 7 Polarization: -84.46 SS G_CDS: -1.77 Total: -86.23 kcal Atomic # 8 Polarization: -43.64 SS G_CDS: -0.06 Total: -43.70 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -74.11 3.29 -70.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885598324.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.378 kcal (2) G-P(sol) polarization free energy of solvation -74.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds