Wall clock time and date at job start Mon Mar 30 2020 02:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86809 * 119.99776 * 2 1 4 4 H 1.48501 * 109.46723 * 90.00289 * 3 2 1 5 5 H 1.48491 * 109.46979 * 210.00121 * 3 2 1 6 6 H 1.48494 * 109.46964 * 330.00351 * 3 2 1 7 7 C 1.38949 * 120.00533 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99727 * 330.51455 * 7 2 1 9 9 N 1.37095 * 120.00031 * 150.50560 * 7 2 1 10 10 C 1.33531 * 118.15913 * 318.94144 * 9 7 2 11 11 O 1.21297 * 118.25586 * 357.41274 * 10 9 7 12 12 C 1.50154 * 123.48251 * 177.43395 * 10 9 7 13 13 C 1.53066 * 110.13759 * 17.19763 * 12 10 9 14 14 C 1.53645 * 108.23890 * 311.39448 * 13 12 10 15 15 H 1.09002 * 109.96156 * 188.44688 * 14 13 12 16 16 C 1.53112 * 108.49147 * 308.73036 * 14 13 12 17 17 C 1.52897 * 109.78330 * 176.55897 * 16 14 13 18 18 C 1.53070 * 109.25601 * 299.38208 * 17 16 14 19 19 C 1.52973 * 109.14972 * 60.91598 * 18 17 16 20 20 C 1.45467 * 118.15289 * 138.67661 * 9 7 2 21 21 H 1.09002 * 108.23848 * 81.85425 * 20 9 7 22 22 H 0.96999 * 119.99179 * 174.56986 * 1 2 3 23 23 H 1.08992 * 109.36104 * 137.40432 * 12 10 9 24 24 H 1.08997 * 109.35588 * 257.13015 * 12 10 9 25 25 H 1.08993 * 109.70829 * 71.08340 * 13 12 10 26 26 H 1.09004 * 109.70871 * 191.71280 * 13 12 10 27 27 H 1.09006 * 109.41477 * 296.65222 * 16 14 13 28 28 H 1.08998 * 109.41663 * 56.52020 * 16 14 13 29 29 H 1.08998 * 109.51047 * 59.31368 * 17 16 14 30 30 H 1.09002 * 109.50562 * 179.40573 * 17 16 14 31 31 H 1.08993 * 109.52954 * 180.82037 * 18 17 16 32 32 H 1.09006 * 109.52387 * 301.01748 * 18 17 16 33 33 H 1.09000 * 109.39087 * 60.52892 * 19 18 17 34 34 H 1.09001 * 109.39524 * 180.33847 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 1.4001 5 1 3.5456 1.4403 -0.7000 6 1 1.4455 2.6527 -0.6999 7 6 2.0090 -1.2033 -0.0005 8 1 1.5739 -2.0782 0.4594 9 7 3.2467 -1.2798 -0.5851 10 6 3.4360 -0.6461 -1.7451 11 8 2.4917 -0.0744 -2.2479 12 6 4.7556 -0.6040 -2.4603 13 6 5.6806 -1.6995 -1.9244 14 6 5.6679 -1.6313 -0.3895 15 1 6.4281 -2.2972 0.0189 16 6 5.9545 -0.1884 0.0349 17 6 5.8643 -0.0690 1.5565 18 6 4.4524 -0.4484 2.0099 19 6 4.1680 -1.8964 1.6067 20 6 4.2815 -2.0421 0.0962 21 1 4.1398 -3.0967 -0.1401 22 1 -0.4849 -0.8363 -0.0795 23 1 4.5935 -0.7578 -3.5270 24 1 5.2213 0.3687 -2.3022 25 1 5.3228 -2.6755 -2.2521 26 1 6.6941 -1.5367 -2.2911 27 1 6.9555 0.0934 -0.2920 28 1 5.2228 0.4764 -0.4240 29 1 6.5876 -0.7412 2.0180 30 1 6.0794 0.9573 1.8544 31 1 4.3789 -0.3507 3.0929 32 1 3.7272 0.2115 1.5336 33 1 4.8896 -2.5550 2.0900 34 1 3.1610 -2.1690 1.9224 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885598384.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:31 Heat of formation + Delta-G solvation = -60.579188 kcal Electronic energy + Delta-G solvation = -17068.420018 eV Core-core repulsion = 14578.846858 eV Total energy + Delta-G solvation = -2489.573160 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.95741 -38.72431 -35.93074 -34.94568 -33.76293 -30.71193 -29.95027 -26.71668 -25.03654 -23.50609 -22.45217 -21.38788 -20.26632 -18.28962 -17.26261 -16.98744 -16.72742 -16.31217 -15.53778 -15.08396 -14.84332 -14.67042 -14.28461 -13.90650 -13.75306 -13.20789 -13.07948 -12.82994 -12.37821 -12.34758 -12.05850 -11.87326 -11.76220 -11.50282 -11.09950 -11.00457 -10.85864 -10.68429 -10.02772 -9.49913 -8.83297 -6.10994 1.27415 1.36839 1.52406 2.13257 2.54963 2.82102 3.13105 3.78695 3.80482 3.88215 4.08095 4.24797 4.32320 4.42139 4.54539 4.64894 4.69596 4.70771 4.77326 4.90286 5.01591 5.09466 5.15111 5.19500 5.24577 5.40497 5.41783 5.45709 5.60808 5.67845 5.73093 6.14268 6.72297 7.00036 7.58419 8.05361 8.50478 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.027519 B = 0.017148 C = 0.014499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.241316 B = 1632.435177 C = 1930.758813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.030 3.970 3 Si 1.099 2.901 4 H -0.281 1.281 5 H -0.262 1.262 6 H -0.317 1.317 7 C -0.426 4.426 8 H 0.048 0.952 9 N -0.449 5.449 10 C 0.450 3.550 11 O -0.631 6.631 12 C -0.128 4.128 13 C -0.108 4.108 14 C -0.090 4.090 15 H 0.124 0.876 16 C -0.128 4.128 17 C -0.111 4.111 18 C -0.130 4.130 19 C -0.105 4.105 20 C 0.130 3.870 21 H 0.046 0.954 22 H 0.261 0.739 23 H 0.091 0.909 24 H 0.097 0.903 25 H 0.066 0.934 26 H 0.111 0.889 27 H 0.094 0.906 28 H 0.035 0.965 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.032 0.968 33 H 0.097 0.903 34 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.495 -3.317 2.186 18.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.176 4.176 3 Si 0.928 3.072 4 H -0.209 1.209 5 H -0.188 1.188 6 H -0.245 1.245 7 C -0.552 4.552 8 H 0.065 0.935 9 N -0.170 5.170 10 C 0.241 3.759 11 O -0.519 6.519 12 C -0.168 4.168 13 C -0.145 4.145 14 C -0.108 4.108 15 H 0.142 0.858 16 C -0.166 4.166 17 C -0.148 4.148 18 C -0.167 4.167 19 C -0.143 4.143 20 C 0.027 3.973 21 H 0.064 0.936 22 H 0.071 0.929 23 H 0.110 0.890 24 H 0.115 0.885 25 H 0.085 0.915 26 H 0.129 0.871 27 H 0.113 0.887 28 H 0.054 0.946 29 H 0.110 0.890 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.050 0.950 33 H 0.115 0.885 34 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 17.858 -1.500 2.040 18.036 hybrid contribution -1.240 -1.702 -0.172 2.113 sum 16.617 -3.201 1.868 17.026 Atomic orbital electron populations 1.70878 1.08579 1.29919 1.44425 1.27044 0.95462 1.04805 0.90302 0.83314 0.75924 0.72851 0.75141 1.20913 1.18769 1.24542 1.19671 0.95664 0.96913 1.42949 0.93465 1.43269 1.09994 1.46544 1.17196 1.20817 0.91416 0.82276 0.81359 1.90462 1.44472 1.49484 1.67498 1.21667 0.92078 1.02633 1.00390 1.21767 1.00483 0.97488 0.94813 1.21558 0.95116 0.98346 0.95815 0.85763 1.21834 1.02160 0.96075 0.96488 1.21516 0.95856 1.01893 0.95562 1.21611 0.97845 0.96929 1.00310 1.21432 1.01296 0.97419 0.94152 1.20906 0.88427 0.94442 0.93546 0.93613 0.92927 0.89042 0.88515 0.91523 0.87111 0.88717 0.94592 0.88985 0.91887 0.91595 0.94961 0.88503 0.94098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -60.08 13.69 21.66 0.30 -59.78 16 2 C 0.03 1.85 4.36 84.93 0.37 2.22 16 3 Si 1.10 59.76 23.39 68.60 1.60 61.36 16 4 H -0.28 -13.87 7.06 99.48 0.70 -13.17 16 5 H -0.26 -13.15 4.15 99.48 0.41 -12.74 16 6 H -0.32 -18.25 7.11 99.48 0.71 -17.54 16 7 C -0.43 -24.82 7.19 84.04 0.60 -24.21 16 8 H 0.05 2.95 7.71 -2.91 -0.02 2.93 16 9 N -0.45 -21.71 2.02 -620.06 -1.25 -22.97 16 10 C 0.45 22.09 4.29 87.68 0.38 22.47 16 11 O -0.63 -38.14 13.26 -3.08 -0.04 -38.18 16 12 C -0.13 -4.39 5.37 29.70 0.16 -4.23 16 13 C -0.11 -2.66 5.67 30.83 0.17 -2.48 16 14 C -0.09 -2.29 2.72 -10.70 -0.03 -2.32 16 15 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 16 C -0.13 -3.38 4.55 30.60 0.14 -3.24 16 17 C -0.11 -2.80 5.92 30.58 0.18 -2.62 16 18 C -0.13 -4.37 5.80 30.61 0.18 -4.19 16 19 C -0.11 -3.54 5.01 30.31 0.15 -3.39 16 20 C 0.13 4.67 2.52 44.76 0.11 4.78 16 21 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 22 H 0.26 17.24 8.73 -92.71 -0.81 16.43 16 23 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 24 H 0.10 3.10 6.80 -2.39 -0.02 3.09 16 25 H 0.07 1.65 8.12 -2.39 -0.02 1.63 16 26 H 0.11 1.83 8.14 -2.38 -0.02 1.81 16 27 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 28 H 0.04 1.24 3.88 -2.39 -0.01 1.23 16 29 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.03 1.37 3.61 -2.38 -0.01 1.36 16 33 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.04 1.65 6.89 -2.39 -0.02 1.64 16 Total: -1.00 -77.81 243.10 3.77 -74.04 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: 0.75 Total: 2.75 kcal Atomic # 6 Polarization: -19.65 SS G_CDS: 2.42 Total: -17.23 kcal Atomic # 7 Polarization: -81.79 SS G_CDS: -0.96 Total: -82.75 kcal Atomic # 8 Polarization: -38.14 SS G_CDS: -0.04 Total: -38.18 kcal Atomic # 14 Polarization: 59.76 SS G_CDS: 1.60 Total: 61.36 kcal Total: -77.81 3.77 -74.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885598384.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.457 kcal (2) G-P(sol) polarization free energy of solvation -77.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds