Wall clock time and date at job start Mon Mar 30 2020 02:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86800 * 120.00264 * 2 1 4 4 H 1.48504 * 109.47289 * 272.82160 * 3 2 1 5 5 H 1.48501 * 109.47195 * 32.82078 * 3 2 1 6 6 H 1.48505 * 109.47260 * 152.81981 * 3 2 1 7 7 C 1.38949 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99920 * 190.21238 * 7 2 1 9 9 N 1.37095 * 120.00102 * 10.21437 * 7 2 1 10 10 C 1.33530 * 118.15340 * 222.70075 * 9 7 2 11 11 O 1.21288 * 118.25963 * 2.53674 * 10 9 7 12 12 C 1.50157 * 123.47373 * 182.52243 * 10 9 7 13 13 C 1.53060 * 110.12888 * 342.76166 * 12 10 9 14 14 C 1.53647 * 108.24138 * 48.64798 * 13 12 10 15 15 H 1.09008 * 110.45170 * 171.86289 * 14 13 12 16 16 C 1.53103 * 108.48437 * 51.29419 * 14 13 12 17 17 C 1.52899 * 109.79629 * 183.46905 * 16 14 13 18 18 C 1.53076 * 109.24587 * 60.61531 * 17 16 14 19 19 C 1.52974 * 109.13585 * 299.05794 * 18 17 16 20 20 C 1.45466 * 118.14998 * 42.69410 * 9 7 2 21 21 H 1.09004 * 107.70362 * 277.91754 * 20 9 7 22 22 H 0.97006 * 119.99958 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.35729 * 222.56303 * 12 10 9 24 24 H 1.08997 * 109.25266 * 102.89888 * 12 10 9 25 25 H 1.08995 * 109.71375 * 288.95297 * 13 12 10 26 26 H 1.09009 * 109.73984 * 168.34975 * 13 12 10 27 27 H 1.09000 * 109.41940 * 63.36599 * 16 14 13 28 28 H 1.09003 * 109.41718 * 303.57244 * 16 14 13 29 29 H 1.09000 * 109.50958 * 300.68321 * 17 16 14 30 30 H 1.08998 * 109.54537 * 180.56687 * 17 16 14 31 31 H 1.09002 * 109.52429 * 179.16108 * 18 17 16 32 32 H 1.08998 * 109.53174 * 58.96195 * 18 17 16 33 33 H 1.08999 * 109.39307 * 299.49159 * 19 18 17 34 34 H 1.09005 * 109.39058 * 179.78636 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4360 2.0809 -1.3984 5 1 1.4767 2.6347 0.7589 6 1 3.5743 1.4236 0.6396 7 6 2.0088 -1.2033 0.0005 8 1 3.0760 -1.2107 0.1664 9 7 1.3396 -2.3813 -0.2095 10 6 1.6528 -3.4291 0.5567 11 8 2.4795 -3.2747 1.4307 12 6 1.0357 -4.7882 0.3938 13 6 -0.2485 -4.6879 -0.4330 14 6 0.0523 -3.8565 -1.6897 15 1 -0.7953 -3.8815 -2.3747 16 6 1.2927 -4.4395 -2.3719 17 6 1.6704 -3.5819 -3.5801 18 6 1.9847 -2.1592 -3.1104 19 6 0.7415 -1.5640 -2.4470 20 6 0.3283 -2.4192 -1.2544 21 1 -0.5915 -2.0057 -0.8406 22 1 -0.4850 0.8401 0.0004 23 1 0.8019 -5.1990 1.3760 24 1 1.7419 -5.4451 -0.1139 25 1 -1.0263 -4.1991 0.1537 26 1 -0.5789 -5.6855 -0.7226 27 1 1.0806 -5.4566 -2.7016 28 1 2.1219 -4.4545 -1.6646 29 1 0.8382 -3.5574 -4.2836 30 1 2.5477 -4.0061 -4.0685 31 1 2.2692 -1.5475 -3.9666 32 1 2.8040 -2.1853 -2.3919 33 1 -0.0741 -1.5321 -3.1695 34 1 0.9620 -0.5519 -2.1075 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885598385.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:34 Heat of formation + Delta-G solvation = -46.340675 kcal Electronic energy + Delta-G solvation = -16833.512136 eV Core-core repulsion = 14344.556404 eV Total energy + Delta-G solvation = -2488.955732 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.03261 -36.71628 -34.40574 -33.29292 -31.11953 -29.05476 -28.33168 -25.19427 -23.61869 -21.85749 -20.74942 -19.62781 -18.00829 -16.09223 -15.63356 -14.77077 -14.62741 -14.41598 -14.34661 -13.43638 -13.23300 -12.73692 -12.44443 -12.24195 -11.79695 -11.55857 -11.29601 -11.00979 -10.86251 -10.78346 -10.61946 -10.31254 -10.14647 -10.05086 -9.83330 -9.44212 -9.31815 -8.63500 -8.14109 -7.25915 -6.17176 -3.94710 3.20498 3.29392 3.35016 4.07608 4.23236 4.94921 5.11314 5.27921 5.28548 5.32833 5.62270 5.71088 5.74685 5.97433 6.10043 6.12753 6.15557 6.23503 6.24710 6.39857 6.45265 6.47742 6.61745 6.64622 6.77263 6.78860 6.96879 7.17743 7.39193 7.45342 7.68775 8.42739 8.63863 9.32123 9.58541 10.14296 10.83116 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.028741 B = 0.013936 C = 0.011451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.993978 B = 2008.725440 C = 2444.567054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.043 3.957 3 Si 0.911 3.089 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.303 4.303 8 H 0.084 0.916 9 N -0.427 5.427 10 C 0.463 3.537 11 O -0.596 6.596 12 C -0.130 4.130 13 C -0.114 4.114 14 C -0.102 4.102 15 H 0.075 0.925 16 C -0.115 4.115 17 C -0.115 4.115 18 C -0.117 4.117 19 C -0.106 4.106 20 C 0.157 3.843 21 H 0.083 0.917 22 H 0.265 0.735 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.044 0.956 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.961 -5.677 -7.324 9.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.161 4.161 3 Si 0.738 3.262 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.432 4.432 8 H 0.102 0.898 9 N -0.146 5.146 10 C 0.251 3.749 11 O -0.481 6.481 12 C -0.170 4.170 13 C -0.152 4.152 14 C -0.121 4.121 15 H 0.094 0.906 16 C -0.153 4.153 17 C -0.152 4.152 18 C -0.154 4.154 19 C -0.144 4.144 20 C 0.053 3.947 21 H 0.101 0.899 22 H 0.075 0.925 23 H 0.098 0.902 24 H 0.097 0.903 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.734 -5.458 -6.907 8.972 hybrid contribution 0.203 0.829 -0.059 0.856 sum -1.531 -4.628 -6.967 8.503 Atomic orbital electron populations 1.69895 1.05819 1.27146 1.48710 1.25378 0.95283 0.99438 0.95988 0.86147 0.79943 0.81871 0.78202 1.20373 1.20982 1.19351 1.19282 0.92684 0.82668 1.48552 0.89807 1.42824 1.34534 1.09355 1.27916 1.19763 0.85829 0.86451 0.82888 1.90529 1.37347 1.84935 1.35319 1.21585 0.97495 0.96883 1.01019 1.21692 0.97511 0.99511 0.96489 1.21613 0.97800 0.96421 0.96278 0.90644 1.21643 0.98458 0.97674 0.97479 1.21509 0.99957 0.96627 0.97126 1.21515 1.00000 0.94536 0.99387 1.21500 0.95647 1.01902 0.95347 1.20507 0.94150 0.91577 0.88487 0.89905 0.92469 0.90243 0.90273 0.91501 0.92175 0.93020 0.91533 0.92844 0.93132 0.93570 0.91089 0.93746 0.89327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.39 10.88 55.50 0.60 -22.79 16 2 C 0.04 1.12 3.44 -17.47 -0.06 1.06 16 3 Si 0.91 20.84 29.56 -169.99 -5.03 15.82 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.30 -8.34 6.97 -14.93 -0.10 -8.45 16 8 H 0.08 2.45 7.70 -52.49 -0.40 2.05 16 9 N -0.43 -10.75 2.36 -109.45 -0.26 -11.01 16 10 C 0.46 11.68 6.55 -11.80 -0.08 11.60 16 11 O -0.60 -17.58 16.63 5.55 0.09 -17.49 16 12 C -0.13 -2.49 5.37 -28.11 -0.15 -2.64 16 13 C -0.11 -1.91 5.67 -26.36 -0.15 -2.06 16 14 C -0.10 -1.77 2.72 -90.39 -0.25 -2.02 16 15 H 0.08 1.17 8.14 -51.92 -0.42 0.75 16 16 C -0.12 -1.87 4.55 -26.73 -0.12 -1.99 16 17 C -0.11 -1.79 5.92 -26.74 -0.16 -1.95 16 18 C -0.12 -2.15 5.80 -26.71 -0.15 -2.30 16 19 C -0.11 -2.17 4.79 -27.02 -0.13 -2.30 16 20 C 0.16 3.40 1.74 -68.91 -0.12 3.28 16 21 H 0.08 2.01 6.78 -51.93 -0.35 1.66 16 22 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 23 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 24 H 0.08 1.38 6.80 -51.93 -0.35 1.03 16 25 H 0.07 1.17 8.12 -51.93 -0.42 0.75 16 26 H 0.06 0.82 8.14 -51.92 -0.42 0.39 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.07 1.23 5.43 -51.93 -0.28 0.95 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 1.49 7.25 -51.93 -0.38 1.11 16 33 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.09 2.07 5.17 -51.93 -0.27 1.80 16 LS Contribution 254.97 15.07 3.84 3.84 Total: -1.00 -30.27 254.97 -7.19 -37.46 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -4.97 Total: 1.92 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -1.47 Total: -7.76 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: 0.35 Total: -33.80 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: 0.09 Total: -17.49 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.82 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.27 -7.19 -37.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885598385.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.879 kcal (2) G-P(sol) polarization free energy of solvation -30.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds