Wall clock time and date at job start Mon Mar 30 2020 02:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86800 * 120.00264 * 2 1 4 4 H 1.48504 * 109.47289 * 272.82160 * 3 2 1 5 5 H 1.48501 * 109.47195 * 32.82078 * 3 2 1 6 6 H 1.48505 * 109.47260 * 152.81981 * 3 2 1 7 7 C 1.38949 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99920 * 190.21238 * 7 2 1 9 9 N 1.37095 * 120.00102 * 10.21437 * 7 2 1 10 10 C 1.33530 * 118.15340 * 222.70075 * 9 7 2 11 11 O 1.21288 * 118.25963 * 2.53674 * 10 9 7 12 12 C 1.50157 * 123.47373 * 182.52243 * 10 9 7 13 13 C 1.53060 * 110.12888 * 342.76166 * 12 10 9 14 14 C 1.53647 * 108.24138 * 48.64798 * 13 12 10 15 15 H 1.09008 * 110.45170 * 171.86289 * 14 13 12 16 16 C 1.53103 * 108.48437 * 51.29419 * 14 13 12 17 17 C 1.52899 * 109.79629 * 183.46905 * 16 14 13 18 18 C 1.53076 * 109.24587 * 60.61531 * 17 16 14 19 19 C 1.52974 * 109.13585 * 299.05794 * 18 17 16 20 20 C 1.45466 * 118.14998 * 42.69410 * 9 7 2 21 21 H 1.09004 * 107.70362 * 277.91754 * 20 9 7 22 22 H 0.97006 * 119.99958 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.35729 * 222.56303 * 12 10 9 24 24 H 1.08997 * 109.25266 * 102.89888 * 12 10 9 25 25 H 1.08995 * 109.71375 * 288.95297 * 13 12 10 26 26 H 1.09009 * 109.73984 * 168.34975 * 13 12 10 27 27 H 1.09000 * 109.41940 * 63.36599 * 16 14 13 28 28 H 1.09003 * 109.41718 * 303.57244 * 16 14 13 29 29 H 1.09000 * 109.50958 * 300.68321 * 17 16 14 30 30 H 1.08998 * 109.54537 * 180.56687 * 17 16 14 31 31 H 1.09002 * 109.52429 * 179.16108 * 18 17 16 32 32 H 1.08998 * 109.53174 * 58.96195 * 18 17 16 33 33 H 1.08999 * 109.39307 * 299.49159 * 19 18 17 34 34 H 1.09005 * 109.39058 * 179.78636 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4360 2.0809 -1.3984 5 1 1.4767 2.6347 0.7589 6 1 3.5743 1.4236 0.6396 7 6 2.0088 -1.2033 0.0005 8 1 3.0760 -1.2107 0.1664 9 7 1.3396 -2.3813 -0.2095 10 6 1.6528 -3.4291 0.5567 11 8 2.4795 -3.2747 1.4307 12 6 1.0357 -4.7882 0.3938 13 6 -0.2485 -4.6879 -0.4330 14 6 0.0523 -3.8565 -1.6897 15 1 -0.7953 -3.8815 -2.3747 16 6 1.2927 -4.4395 -2.3719 17 6 1.6704 -3.5819 -3.5801 18 6 1.9847 -2.1592 -3.1104 19 6 0.7415 -1.5640 -2.4470 20 6 0.3283 -2.4192 -1.2544 21 1 -0.5915 -2.0057 -0.8406 22 1 -0.4850 0.8401 0.0004 23 1 0.8019 -5.1990 1.3760 24 1 1.7419 -5.4451 -0.1139 25 1 -1.0263 -4.1991 0.1537 26 1 -0.5789 -5.6855 -0.7226 27 1 1.0806 -5.4566 -2.7016 28 1 2.1219 -4.4545 -1.6646 29 1 0.8382 -3.5574 -4.2836 30 1 2.5477 -4.0061 -4.0685 31 1 2.2692 -1.5475 -3.9666 32 1 2.8040 -2.1853 -2.3919 33 1 -0.0741 -1.5321 -3.1695 34 1 0.9620 -0.5519 -2.1075 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885598385.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:34 Heat of formation + Delta-G solvation = -65.106748 kcal Electronic energy + Delta-G solvation = -16834.325894 eV Core-core repulsion = 14344.556404 eV Total energy + Delta-G solvation = -2489.769490 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.72332 -38.52835 -36.21514 -34.87447 -33.09615 -30.60870 -29.86726 -27.15898 -25.13985 -23.38428 -22.36935 -21.21735 -19.81108 -17.85568 -17.51020 -16.54419 -16.25678 -16.16700 -16.03561 -14.94546 -14.86211 -14.41561 -13.98270 -13.91920 -13.41503 -13.14224 -13.05758 -12.72773 -12.53337 -12.34196 -12.23814 -12.14739 -11.72175 -11.63081 -11.22856 -11.05989 -10.85648 -10.49029 -10.07977 -9.28027 -8.21319 -6.07168 1.34288 1.37432 1.48187 2.14326 2.30131 3.09262 3.17621 3.88911 3.91044 3.94173 4.16643 4.29674 4.37554 4.52133 4.63420 4.72568 4.74831 4.80905 4.92919 4.98167 5.06656 5.18127 5.21019 5.24865 5.33879 5.44148 5.47090 5.52454 5.68608 5.76158 5.82423 6.29827 6.64200 7.26140 7.64295 8.16346 8.75995 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.028741 B = 0.013936 C = 0.011451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.993978 B = 2008.725440 C = 2444.567054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.016 3.984 3 Si 0.966 3.034 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.280 1.280 7 C -0.331 4.331 8 H 0.050 0.950 9 N -0.430 5.430 10 C 0.440 3.560 11 O -0.656 6.656 12 C -0.120 4.120 13 C -0.107 4.107 14 C -0.098 4.098 15 H 0.107 0.893 16 C -0.113 4.113 17 C -0.109 4.109 18 C -0.114 4.114 19 C -0.105 4.105 20 C 0.154 3.846 21 H 0.052 0.948 22 H 0.269 0.731 23 H 0.086 0.914 24 H 0.102 0.898 25 H 0.053 0.947 26 H 0.109 0.891 27 H 0.091 0.909 28 H 0.036 0.964 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.032 0.968 33 H 0.068 0.932 34 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.225 -7.060 -9.529 12.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.186 4.186 3 Si 0.790 3.210 4 H -0.184 1.184 5 H -0.202 1.202 6 H -0.205 1.205 7 C -0.460 4.460 8 H 0.068 0.932 9 N -0.147 5.147 10 C 0.231 3.769 11 O -0.546 6.546 12 C -0.160 4.160 13 C -0.145 4.145 14 C -0.116 4.116 15 H 0.125 0.875 16 C -0.150 4.150 17 C -0.146 4.146 18 C -0.151 4.151 19 C -0.143 4.143 20 C 0.050 3.950 21 H 0.069 0.931 22 H 0.079 0.921 23 H 0.105 0.895 24 H 0.120 0.880 25 H 0.072 0.928 26 H 0.127 0.873 27 H 0.109 0.891 28 H 0.055 0.945 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.051 0.949 33 H 0.086 0.914 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.034 -6.842 -9.150 11.821 hybrid contribution 0.598 1.312 0.654 1.583 sum -2.436 -5.530 -8.496 10.426 Atomic orbital electron populations 1.69975 1.06557 1.28003 1.48299 1.25933 0.96037 1.01661 0.94997 0.85347 0.78222 0.78430 0.79009 1.18450 1.20163 1.20535 1.19111 0.91704 0.84645 1.50546 0.93191 1.43061 1.34372 1.08704 1.28582 1.20954 0.85311 0.88747 0.81928 1.90474 1.40042 1.86325 1.37765 1.21546 0.99038 0.92897 1.02506 1.21706 0.95426 1.01909 0.95429 1.21650 0.99599 0.93110 0.97289 0.87481 1.21639 0.96612 0.99846 0.96904 1.21492 1.01755 0.94017 0.97358 1.21452 0.97623 0.97291 0.98763 1.21438 0.97403 0.99872 0.95555 1.20641 0.91419 0.95164 0.87765 0.93057 0.92084 0.89549 0.88011 0.92796 0.87306 0.89075 0.94502 0.90229 0.91386 0.92047 0.94922 0.91393 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.43 10.88 21.66 0.24 -48.19 16 2 C 0.02 0.87 3.44 84.93 0.29 1.16 16 3 Si 0.97 43.79 29.56 68.60 2.03 45.82 16 4 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 5 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 6 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 7 C -0.33 -19.16 6.97 84.04 0.59 -18.58 16 8 H 0.05 3.16 7.70 -2.91 -0.02 3.14 16 9 N -0.43 -22.32 2.36 -619.27 -1.46 -23.78 16 10 C 0.44 22.89 6.55 87.68 0.57 23.46 16 11 O -0.66 -40.73 16.63 -3.05 -0.05 -40.78 16 12 C -0.12 -4.44 5.37 29.70 0.16 -4.28 16 13 C -0.11 -3.22 5.67 30.83 0.17 -3.04 16 14 C -0.10 -3.07 2.72 -10.64 -0.03 -3.10 16 15 H 0.11 2.76 8.14 -2.38 -0.02 2.75 16 16 C -0.11 -3.23 4.55 30.60 0.14 -3.09 16 17 C -0.11 -2.99 5.92 30.59 0.18 -2.80 16 18 C -0.11 -4.06 5.80 30.61 0.18 -3.88 16 19 C -0.10 -4.22 4.79 30.41 0.15 -4.08 16 20 C 0.15 6.60 1.74 44.91 0.08 6.68 16 21 H 0.05 2.52 6.78 -2.38 -0.02 2.50 16 22 H 0.27 13.82 8.31 -92.70 -0.77 13.05 16 23 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 24 H 0.10 3.31 6.80 -2.39 -0.02 3.30 16 25 H 0.05 1.76 8.12 -2.39 -0.02 1.74 16 26 H 0.11 2.30 8.14 -2.38 -0.02 2.28 16 27 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.04 1.28 5.43 -2.39 -0.01 1.27 16 29 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.03 1.39 7.25 -2.39 -0.02 1.38 16 33 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.05 2.47 5.17 -2.38 -0.01 2.46 16 Total: -1.00 -70.35 254.97 4.31 -66.03 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 1.08 Total: 12.45 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: 2.48 Total: -11.54 kcal Atomic # 7 Polarization: -70.75 SS G_CDS: -1.22 Total: -71.97 kcal Atomic # 8 Polarization: -40.73 SS G_CDS: -0.05 Total: -40.78 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -70.35 4.31 -66.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885598385.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.927 kcal (2) G-P(sol) polarization free energy of solvation -70.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds