Wall clock time and date at job start Mon Mar 30 2020 02:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86802 * 120.00042 * 2 1 4 4 H 1.48505 * 109.47135 * 94.35282 * 3 2 1 5 5 H 1.48495 * 109.47285 * 214.35312 * 3 2 1 6 6 H 1.48496 * 109.46906 * 334.35816 * 3 2 1 7 7 C 1.38952 * 120.00057 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99500 * 16.62721 * 7 2 1 9 9 N 1.37100 * 119.99975 * 196.61700 * 7 2 1 10 10 C 1.33635 * 118.40412 * 222.24708 * 9 7 2 11 11 O 1.21290 * 118.05033 * 3.76335 * 10 9 7 12 12 C 1.50056 * 123.92257 * 183.49836 * 10 9 7 13 13 C 1.53179 * 110.51859 * 344.15791 * 12 10 9 14 14 C 1.52931 * 108.22180 * 46.65906 * 13 12 10 15 15 H 1.08995 * 109.32514 * 51.99555 * 14 13 12 16 16 C 1.52987 * 110.25584 * 173.27528 * 14 13 12 17 17 C 1.53195 * 108.16572 * 181.39757 * 16 14 13 18 18 C 1.52890 * 109.96426 * 300.13597 * 17 16 14 19 19 C 1.53211 * 109.95868 * 58.92001 * 18 17 16 20 20 C 1.45365 * 118.40588 * 42.51629 * 9 7 2 21 21 H 1.09000 * 108.76139 * 276.69874 * 20 9 7 22 22 H 0.97005 * 120.00084 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.44963 * 223.72322 * 12 10 9 24 24 H 1.08994 * 108.94174 * 104.26168 * 12 10 9 25 25 H 1.09003 * 109.70915 * 286.98267 * 13 12 10 26 26 H 1.08997 * 109.74991 * 166.36582 * 13 12 10 27 27 H 1.08992 * 110.28668 * 61.58090 * 16 14 13 28 28 H 1.09003 * 109.65942 * 300.83424 * 16 14 13 29 29 H 1.08994 * 109.38650 * 179.97438 * 17 16 14 30 30 H 1.09000 * 109.39221 * 60.28660 * 17 16 14 31 31 H 1.09004 * 109.39507 * 298.77073 * 18 17 16 32 32 H 1.08999 * 109.31081 * 179.01942 * 18 17 16 33 33 H 1.09003 * 109.56915 * 180.85385 * 19 18 17 34 34 H 1.09001 * 109.66464 * 60.55698 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.5877 1.9933 1.3961 5 1 3.4966 1.4685 -0.7900 6 1 1.4025 2.6775 -0.6059 7 6 2.0089 -1.2034 0.0005 8 1 1.5027 -2.1192 -0.2667 9 7 3.3369 -1.2280 0.3401 10 6 4.1642 -1.9878 -0.3839 11 8 3.7106 -2.5646 -1.3496 12 6 5.6222 -2.1658 -0.0769 13 6 6.1014 -1.0856 0.8978 14 6 5.0855 -0.9842 2.0365 15 1 4.9108 -1.9760 2.4534 16 6 5.6003 -0.0380 3.1228 17 6 4.5656 0.0008 4.2519 18 6 3.2249 0.5020 3.7144 19 6 2.7350 -0.4177 2.5912 20 6 3.7758 -0.4309 1.4738 21 1 3.9432 0.5927 1.1388 22 1 -0.4850 0.8401 0.0004 23 1 6.1982 -2.0995 -0.9998 24 1 5.7720 -3.1478 0.3716 25 1 6.1708 -0.1285 0.3807 26 1 7.0774 -1.3583 1.2990 27 1 5.7361 0.9646 2.7174 28 1 6.5499 -0.4068 3.5105 29 1 4.9134 0.6703 5.0385 30 1 4.4393 -1.0014 4.6616 31 1 3.3457 1.5137 3.3269 32 1 2.4927 0.5088 4.5218 33 1 1.7868 -0.0461 2.2026 34 1 2.6006 -1.4282 2.9770 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885598387.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:39 Heat of formation + Delta-G solvation = -43.844962 kcal Electronic energy + Delta-G solvation = -16644.703809 eV Core-core repulsion = 14155.856299 eV Total energy + Delta-G solvation = -2488.847510 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.12534 -37.32041 -34.43660 -33.76218 -31.67129 -29.55118 -28.59062 -25.16524 -23.51148 -22.14473 -20.92428 -19.88254 -18.51993 -17.10110 -15.62344 -15.47615 -14.86655 -14.29275 -14.03585 -13.71451 -13.42668 -13.20201 -12.92355 -12.44990 -12.12546 -11.96443 -11.53055 -11.19862 -11.17606 -10.92667 -10.67120 -10.61597 -10.36904 -10.19042 -9.92014 -9.69440 -9.58325 -8.80341 -8.33610 -7.59806 -6.31623 -3.96044 3.09761 3.25939 3.29883 3.83155 4.20741 4.46709 4.86056 4.92253 5.03292 5.14201 5.31702 5.41243 5.55524 5.66783 5.73008 5.78704 5.85743 5.90476 5.93793 6.05113 6.16899 6.19012 6.28060 6.32366 6.43835 6.51060 6.53148 6.61107 6.89259 7.11983 7.65581 8.41833 8.62621 9.06034 9.42723 9.85674 10.80311 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.022274 B = 0.017624 C = 0.011877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.756325 B = 1588.345942 C = 2356.942598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.067 3.933 3 Si 0.869 3.131 4 H -0.262 1.262 5 H -0.270 1.270 6 H -0.291 1.291 7 C -0.313 4.313 8 H 0.101 0.899 9 N -0.460 5.460 10 C 0.467 3.533 11 O -0.576 6.576 12 C -0.130 4.130 13 C -0.117 4.117 14 C -0.100 4.100 15 H 0.079 0.921 16 C -0.109 4.109 17 C -0.119 4.119 18 C -0.121 4.121 19 C -0.121 4.121 20 C 0.136 3.864 21 H 0.049 0.951 22 H 0.273 0.727 23 H 0.086 0.914 24 H 0.083 0.917 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.034 2.541 9.062 14.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.138 4.138 3 Si 0.696 3.304 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.217 1.217 7 C -0.440 4.440 8 H 0.119 0.881 9 N -0.181 5.181 10 C 0.255 3.745 11 O -0.458 6.458 12 C -0.170 4.170 13 C -0.155 4.155 14 C -0.119 4.119 15 H 0.097 0.903 16 C -0.147 4.147 17 C -0.156 4.156 18 C -0.159 4.159 19 C -0.158 4.158 20 C 0.031 3.969 21 H 0.066 0.934 22 H 0.083 0.917 23 H 0.105 0.895 24 H 0.101 0.899 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.621 2.360 8.575 13.853 hybrid contribution 0.361 1.013 -0.038 1.076 sum 10.983 3.373 8.537 14.314 Atomic orbital electron populations 1.69710 1.06035 1.27699 1.47426 1.25333 0.95106 0.97973 0.95368 0.87222 0.80329 0.83812 0.79003 1.18798 1.19539 1.21747 1.18976 0.82443 0.96002 1.46596 0.88100 1.43198 1.08441 1.41989 1.24500 1.19892 0.87401 0.83572 0.83594 1.90573 1.76733 1.49577 1.28946 1.21564 0.94894 0.99946 1.00602 1.21655 0.98323 0.99298 0.96198 1.21503 0.94965 1.00004 0.95450 0.90282 1.21564 0.98021 0.99461 0.95606 1.21576 0.95499 1.01219 0.97353 1.21625 0.96387 0.99640 0.98290 1.21776 1.00077 1.00077 0.93911 1.20912 0.93499 0.94580 0.87862 0.93398 0.91715 0.89522 0.89892 0.91744 0.91375 0.91917 0.91789 0.92492 0.91994 0.92249 0.92012 0.89032 0.91619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.45 13.96 55.50 0.77 -24.67 16 2 C 0.07 1.88 3.88 -17.47 -0.07 1.82 16 3 Si 0.87 21.09 23.66 -169.99 -4.02 17.07 16 4 H -0.26 -5.72 5.42 56.52 0.31 -5.41 16 5 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.31 -9.03 8.19 -14.93 -0.12 -9.15 16 8 H 0.10 3.29 7.91 -52.49 -0.42 2.87 16 9 N -0.46 -11.46 2.42 -109.27 -0.26 -11.73 16 10 C 0.47 11.42 7.43 -11.80 -0.09 11.33 16 11 O -0.58 -16.64 16.63 5.55 0.09 -16.54 16 12 C -0.13 -2.30 5.99 -28.10 -0.17 -2.47 16 13 C -0.12 -1.76 5.39 -26.67 -0.14 -1.90 16 14 C -0.10 -1.60 1.92 -90.71 -0.17 -1.78 16 15 H 0.08 1.26 8.11 -51.93 -0.42 0.84 16 16 C -0.11 -1.41 5.33 -26.64 -0.14 -1.55 16 17 C -0.12 -1.53 5.88 -26.69 -0.16 -1.68 16 18 C -0.12 -1.90 5.86 -26.68 -0.16 -2.05 16 19 C -0.12 -2.38 4.08 -26.77 -0.11 -2.49 16 20 C 0.14 2.79 1.33 -68.73 -0.09 2.70 16 21 H 0.05 1.04 4.39 -51.93 -0.23 0.81 16 22 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 23 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 24 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 25 H 0.06 1.00 8.13 -51.93 -0.42 0.57 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.96 7.15 -51.93 -0.37 0.59 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.09 2.10 5.00 -51.93 -0.26 1.84 16 34 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 253.88 15.07 3.83 3.83 Total: -1.00 -32.15 253.88 -6.17 -38.32 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -5.15 Total: 0.97 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: -1.42 Total: -7.23 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.51 Total: -36.40 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: 0.09 Total: -16.54 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.02 Total: 17.07 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -32.15 -6.17 -38.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885598387.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.525 kcal (2) G-P(sol) polarization free energy of solvation -32.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds