Wall clock time and date at job start Mon Mar 30 2020 02:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86802 * 120.00042 * 2 1 4 4 H 1.48505 * 109.47135 * 94.35282 * 3 2 1 5 5 H 1.48495 * 109.47285 * 214.35312 * 3 2 1 6 6 H 1.48496 * 109.46906 * 334.35816 * 3 2 1 7 7 C 1.38952 * 120.00057 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99500 * 16.62721 * 7 2 1 9 9 N 1.37100 * 119.99975 * 196.61700 * 7 2 1 10 10 C 1.33635 * 118.40412 * 222.24708 * 9 7 2 11 11 O 1.21290 * 118.05033 * 3.76335 * 10 9 7 12 12 C 1.50056 * 123.92257 * 183.49836 * 10 9 7 13 13 C 1.53179 * 110.51859 * 344.15791 * 12 10 9 14 14 C 1.52931 * 108.22180 * 46.65906 * 13 12 10 15 15 H 1.08995 * 109.32514 * 51.99555 * 14 13 12 16 16 C 1.52987 * 110.25584 * 173.27528 * 14 13 12 17 17 C 1.53195 * 108.16572 * 181.39757 * 16 14 13 18 18 C 1.52890 * 109.96426 * 300.13597 * 17 16 14 19 19 C 1.53211 * 109.95868 * 58.92001 * 18 17 16 20 20 C 1.45365 * 118.40588 * 42.51629 * 9 7 2 21 21 H 1.09000 * 108.76139 * 276.69874 * 20 9 7 22 22 H 0.97005 * 120.00084 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.44963 * 223.72322 * 12 10 9 24 24 H 1.08994 * 108.94174 * 104.26168 * 12 10 9 25 25 H 1.09003 * 109.70915 * 286.98267 * 13 12 10 26 26 H 1.08997 * 109.74991 * 166.36582 * 13 12 10 27 27 H 1.08992 * 110.28668 * 61.58090 * 16 14 13 28 28 H 1.09003 * 109.65942 * 300.83424 * 16 14 13 29 29 H 1.08994 * 109.38650 * 179.97438 * 17 16 14 30 30 H 1.09000 * 109.39221 * 60.28660 * 17 16 14 31 31 H 1.09004 * 109.39507 * 298.77073 * 18 17 16 32 32 H 1.08999 * 109.31081 * 179.01942 * 18 17 16 33 33 H 1.09003 * 109.56915 * 180.85385 * 19 18 17 34 34 H 1.09001 * 109.66464 * 60.55698 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.5877 1.9933 1.3961 5 1 3.4966 1.4685 -0.7900 6 1 1.4025 2.6775 -0.6059 7 6 2.0089 -1.2034 0.0005 8 1 1.5027 -2.1192 -0.2667 9 7 3.3369 -1.2280 0.3401 10 6 4.1642 -1.9878 -0.3839 11 8 3.7106 -2.5646 -1.3496 12 6 5.6222 -2.1658 -0.0769 13 6 6.1014 -1.0856 0.8978 14 6 5.0855 -0.9842 2.0365 15 1 4.9108 -1.9760 2.4534 16 6 5.6003 -0.0380 3.1228 17 6 4.5656 0.0008 4.2519 18 6 3.2249 0.5020 3.7144 19 6 2.7350 -0.4177 2.5912 20 6 3.7758 -0.4309 1.4738 21 1 3.9432 0.5927 1.1388 22 1 -0.4850 0.8401 0.0004 23 1 6.1982 -2.0995 -0.9998 24 1 5.7720 -3.1478 0.3716 25 1 6.1708 -0.1285 0.3807 26 1 7.0774 -1.3583 1.2990 27 1 5.7361 0.9646 2.7174 28 1 6.5499 -0.4068 3.5105 29 1 4.9134 0.6703 5.0385 30 1 4.4393 -1.0014 4.6616 31 1 3.3457 1.5137 3.3269 32 1 2.4927 0.5088 4.5218 33 1 1.7868 -0.0461 2.2026 34 1 2.6006 -1.4282 2.9770 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885598387.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:39 Heat of formation + Delta-G solvation = -66.508458 kcal Electronic energy + Delta-G solvation = -16645.686572 eV Core-core repulsion = 14155.856299 eV Total energy + Delta-G solvation = -2489.830273 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.75779 -38.98250 -36.27622 -35.20831 -33.71687 -30.88028 -30.04452 -27.18503 -24.90160 -23.57584 -22.40150 -21.15383 -20.28010 -18.96416 -17.53069 -17.23295 -16.39069 -16.00659 -15.58713 -15.12485 -14.82398 -14.77890 -14.57922 -14.08578 -13.67995 -13.51785 -12.97483 -12.92993 -12.48671 -12.37408 -12.30736 -12.18604 -11.89440 -11.66875 -11.43726 -11.09100 -10.97155 -10.77792 -10.23235 -9.64500 -8.52297 -6.21854 1.14259 1.23993 1.33751 1.92878 2.13960 2.72357 2.93558 3.65692 3.71781 3.84141 4.01523 4.18407 4.25731 4.34712 4.39832 4.53908 4.58273 4.63660 4.69072 4.91832 4.93317 5.07649 5.10777 5.18581 5.29434 5.32304 5.35380 5.36855 5.48728 5.60509 5.63885 6.04102 6.59827 6.93045 7.36042 7.86923 8.64874 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.022274 B = 0.017624 C = 0.011877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.756325 B = 1588.345942 C = 2356.942598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.029 3.971 3 Si 0.931 3.069 4 H -0.219 1.219 5 H -0.277 1.277 6 H -0.289 1.289 7 C -0.331 4.331 8 H 0.038 0.962 9 N -0.468 5.468 10 C 0.449 3.551 11 O -0.638 6.638 12 C -0.120 4.120 13 C -0.110 4.110 14 C -0.096 4.096 15 H 0.080 0.920 16 C -0.103 4.103 17 C -0.115 4.115 18 C -0.117 4.117 19 C -0.120 4.120 20 C 0.125 3.875 21 H 0.044 0.956 22 H 0.279 0.721 23 H 0.100 0.900 24 H 0.106 0.894 25 H 0.062 0.938 26 H 0.119 0.881 27 H 0.067 0.933 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.049 0.951 34 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.820 4.322 11.571 19.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.173 4.173 3 Si 0.755 3.245 4 H -0.142 1.142 5 H -0.202 1.202 6 H -0.216 1.216 7 C -0.459 4.459 8 H 0.056 0.944 9 N -0.188 5.188 10 C 0.240 3.760 11 O -0.525 6.525 12 C -0.160 4.160 13 C -0.147 4.147 14 C -0.115 4.115 15 H 0.098 0.902 16 C -0.141 4.141 17 C -0.153 4.153 18 C -0.155 4.155 19 C -0.159 4.159 20 C 0.022 3.978 21 H 0.062 0.938 22 H 0.088 0.912 23 H 0.119 0.881 24 H 0.124 0.876 25 H 0.081 0.919 26 H 0.137 0.863 27 H 0.086 0.914 28 H 0.120 0.880 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 14.423 4.151 11.136 18.689 hybrid contribution -0.935 0.337 -0.864 1.317 sum 13.489 4.488 10.271 17.538 Atomic orbital electron populations 1.69822 1.07820 1.29062 1.48484 1.25983 0.95729 1.01359 0.94198 0.86254 0.78320 0.78750 0.81210 1.14209 1.20233 1.21578 1.18550 0.84794 0.94333 1.48246 0.94441 1.43414 1.06878 1.42435 1.26105 1.21307 0.90299 0.81868 0.82493 1.90529 1.78571 1.51765 1.31624 1.21574 0.89254 1.02530 1.02621 1.21712 1.00105 0.98029 0.94893 1.21560 0.92453 1.00746 0.96780 0.90209 1.21602 0.99394 0.98914 0.94166 1.21581 0.93462 1.02187 0.98043 1.21625 0.98730 0.98299 0.96889 1.21741 0.98338 1.00493 0.95286 1.21231 0.96356 0.93781 0.86452 0.93818 0.91171 0.88134 0.87565 0.91913 0.86273 0.91398 0.88003 0.89448 0.91442 0.92362 0.90917 0.93206 0.92647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.14 13.96 21.66 0.30 -55.84 16 2 C 0.03 1.72 3.88 84.93 0.33 2.05 16 3 Si 0.93 43.97 23.66 68.60 1.62 45.59 16 4 H -0.22 -8.75 5.42 99.48 0.54 -8.21 16 5 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 6 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 7 C -0.33 -20.40 8.19 84.04 0.69 -19.72 16 8 H 0.04 2.71 7.91 -2.91 -0.02 2.69 16 9 N -0.47 -23.93 2.42 -618.66 -1.50 -25.43 16 10 C 0.45 22.42 7.43 87.63 0.65 23.07 16 11 O -0.64 -38.87 16.63 -3.06 -0.05 -38.92 16 12 C -0.12 -3.96 5.99 29.71 0.18 -3.78 16 13 C -0.11 -2.76 5.39 30.63 0.17 -2.60 16 14 C -0.10 -2.70 1.92 -10.85 -0.02 -2.72 16 15 H 0.08 2.24 8.11 -2.39 -0.02 2.22 16 16 C -0.10 -2.04 5.33 30.66 0.16 -1.88 16 17 C -0.12 -2.34 5.88 30.62 0.18 -2.16 16 18 C -0.12 -3.29 5.86 30.63 0.18 -3.11 16 19 C -0.12 -4.68 4.08 30.57 0.12 -4.56 16 20 C 0.12 4.95 1.33 45.08 0.06 5.01 16 21 H 0.04 1.78 4.39 -2.39 -0.01 1.77 16 22 H 0.28 15.74 8.31 -92.70 -0.77 14.97 16 23 H 0.10 3.05 8.14 -2.39 -0.02 3.04 16 24 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 25 H 0.06 1.64 8.13 -2.39 -0.02 1.62 16 26 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.06 1.64 7.15 -2.39 -0.02 1.63 16 32 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.05 2.33 5.00 -2.39 -0.01 2.32 16 34 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -78.12 253.88 3.98 -74.13 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: 0.91 Total: 10.85 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 2.70 Total: -10.39 kcal Atomic # 7 Polarization: -80.07 SS G_CDS: -1.20 Total: -81.27 kcal Atomic # 8 Polarization: -38.87 SS G_CDS: -0.05 Total: -38.92 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.62 Total: 45.59 kcal Total: -78.12 3.98 -74.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885598387.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.624 kcal (2) G-P(sol) polarization free energy of solvation -78.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds