Wall clock time and date at job start Mon Mar 30 2020 03:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99852 * 2 1 4 4 H 1.48495 * 109.47150 * 270.00085 * 3 2 1 5 5 H 1.48499 * 109.47205 * 30.00183 * 3 2 1 6 6 H 1.48499 * 109.47171 * 149.99748 * 3 2 1 7 7 C 1.37871 * 120.00151 * 179.97438 * 2 1 3 8 8 C 1.51276 * 120.84883 * 0.02562 * 7 2 1 9 9 C 1.53228 * 108.53512 * 231.32177 * 8 7 2 10 10 C 1.52951 * 109.40999 * 305.37424 * 9 8 7 11 11 H 1.09002 * 109.35571 * 303.53022 * 10 9 8 12 12 N 1.46491 * 109.41713 * 183.70456 * 10 9 8 13 13 C 1.34776 * 120.00197 * 84.64383 * 12 10 9 14 14 O 1.21284 * 119.99704 * 0.02562 * 13 12 10 15 15 C 1.50704 * 120.00282 * 180.02562 * 13 12 10 16 16 C 1.52999 * 117.49736 * 248.74851 * 15 13 12 17 17 C 1.52996 * 117.49878 * 180.09019 * 15 13 12 18 18 C 1.52963 * 109.81716 * 63.59625 * 10 9 8 19 19 C 1.51269 * 120.85240 * 179.97438 * 7 2 1 20 20 H 0.97003 * 119.99821 * 0.02562 * 1 2 3 21 21 H 1.08991 * 109.62630 * 351.04217 * 8 7 2 22 22 H 1.09003 * 109.62166 * 111.61116 * 8 7 2 23 23 H 1.08999 * 109.47771 * 65.35953 * 9 8 7 24 24 H 1.09003 * 109.47886 * 185.39008 * 9 8 7 25 25 H 0.96998 * 120.00316 * 264.64972 * 12 10 9 26 26 H 1.09000 * 115.54453 * 34.41801 * 15 13 12 27 27 H 1.09001 * 117.50150 * 0.02562 * 16 15 13 28 28 H 1.08998 * 117.49557 * 145.02010 * 16 15 13 29 29 H 1.09000 * 117.49744 * 214.97867 * 17 15 13 30 30 H 1.09001 * 117.49812 * 359.97438 * 17 15 13 31 31 H 1.08997 * 109.48191 * 176.42349 * 18 10 9 32 32 H 1.08998 * 109.47929 * 56.38460 * 18 10 9 33 33 H 1.08995 * 109.62532 * 248.39207 * 19 7 2 34 34 H 1.09000 * 109.62052 * 8.77161 * 19 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 6 1.2677 -2.5151 0.0005 9 6 1.8230 -3.3825 1.1351 10 6 3.3399 -3.5070 0.9841 11 1 3.5729 -3.9117 -0.0008 12 7 3.8598 -4.4074 2.0160 13 6 3.8527 -5.7399 1.8136 14 8 3.4162 -6.1934 0.7768 15 6 4.3870 -6.6663 2.8754 16 6 5.6860 -7.4152 2.5709 17 6 4.3533 -8.1680 2.5847 18 6 3.9907 -2.1309 1.1352 19 6 3.5171 -1.2164 0.0000 20 1 -0.4850 0.8401 -0.0004 21 1 0.2037 -2.3409 0.1599 22 1 1.4201 -3.0192 -0.9538 23 1 1.5898 -2.9196 2.0940 24 1 1.3706 -4.3732 1.0900 25 1 4.2092 -4.0448 2.8450 26 1 4.2183 -6.3488 3.9044 27 1 6.1543 -7.2375 1.6028 28 1 6.3717 -7.5908 3.3998 29 1 4.1628 -8.8386 3.4227 30 1 3.9442 -8.4860 1.6257 31 1 5.0748 -2.2346 1.0901 32 1 3.7063 -1.6977 2.0941 33 1 3.8772 -1.6005 -0.9544 34 1 3.8982 -0.2072 0.1557 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885598388.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:13 Heat of formation + Delta-G solvation = -33.790336 kcal Electronic energy + Delta-G solvation = -15389.894360 eV Core-core repulsion = 12901.482852 eV Total energy + Delta-G solvation = -2488.411509 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.71755 -37.17857 -35.72332 -33.64642 -31.53722 -29.62025 -27.53144 -24.26927 -22.50076 -21.77090 -21.47687 -19.81557 -19.27823 -17.26251 -16.10816 -15.63756 -15.02403 -14.44839 -14.26873 -13.91786 -13.12485 -12.83096 -12.50470 -12.23275 -12.05340 -11.69769 -11.56745 -11.03164 -10.82505 -10.76690 -10.65808 -10.49101 -10.27215 -9.92193 -9.55872 -9.47123 -9.03717 -8.78849 -8.46997 -8.25444 -6.08872 -4.00430 2.78008 3.26611 3.34070 3.35053 3.52555 3.89002 4.37551 4.72663 4.84991 4.85587 5.16714 5.21775 5.48827 5.63411 5.76031 5.88871 5.89961 6.07314 6.18433 6.48977 6.55174 6.72643 6.78902 6.84888 7.03357 7.11382 7.26921 7.40003 7.65527 7.77691 7.86601 7.97062 8.40529 8.63096 8.98057 9.54622 11.00607 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.060098 B = 0.006343 C = 0.005981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.791728 B = 4413.176585 C = 4680.570620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.075 3.925 3 Si 0.887 3.113 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.265 1.265 7 C -0.488 4.488 8 C 0.011 3.989 9 C -0.114 4.114 10 C 0.153 3.847 11 H 0.077 0.923 12 N -0.720 5.720 13 C 0.536 3.464 14 O -0.545 6.545 15 C -0.193 4.193 16 C -0.156 4.156 17 C -0.150 4.150 18 C -0.112 4.112 19 C -0.018 4.018 20 H 0.264 0.736 21 H 0.058 0.942 22 H 0.005 0.995 23 H 0.048 0.952 24 H 0.034 0.966 25 H 0.394 0.606 26 H 0.120 0.880 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.037 0.963 32 H 0.056 0.944 33 H 0.019 0.981 34 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.679 -8.997 7.323 15.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.127 4.127 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.190 1.190 7 C -0.507 4.507 8 C -0.027 4.027 9 C -0.153 4.153 10 C 0.051 3.949 11 H 0.095 0.905 12 N -0.369 5.369 13 C 0.321 3.679 14 O -0.423 6.423 15 C -0.214 4.214 16 C -0.193 4.193 17 C -0.188 4.188 18 C -0.150 4.150 19 C -0.056 4.056 20 H 0.074 0.926 21 H 0.077 0.923 22 H 0.024 0.976 23 H 0.067 0.933 24 H 0.053 0.947 25 H 0.227 0.773 26 H 0.138 0.862 27 H 0.116 0.884 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.126 0.874 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.037 0.963 34 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 9.184 -9.180 6.561 14.549 hybrid contribution 0.527 1.183 0.600 1.427 sum 9.712 -7.997 7.161 14.476 Atomic orbital electron populations 1.69849 1.06156 1.26870 1.49845 1.24861 0.94725 0.98531 0.94607 0.86678 0.79898 0.83339 0.78514 1.20398 1.21660 1.19005 1.20063 0.89282 0.91597 1.49799 1.19355 0.98646 0.92664 0.92001 1.21956 0.93322 0.98477 1.01496 1.21058 0.94897 0.88604 0.90385 0.90514 1.46328 1.63205 1.05943 1.21437 1.19588 0.78376 0.82793 0.87097 1.90685 1.47020 1.76430 1.28124 1.22264 1.04503 0.94870 0.99753 1.22911 0.90219 1.02660 1.03531 1.22926 0.99896 0.91732 1.04198 1.21845 0.96760 0.94801 1.01628 1.19787 0.96891 0.95387 0.93537 0.92602 0.92339 0.97611 0.93277 0.94732 0.77327 0.86173 0.88353 0.88088 0.88212 0.87445 0.94455 0.92561 0.96267 0.94382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.77 12.73 55.43 0.71 -25.06 16 2 C 0.08 2.06 5.46 -17.82 -0.10 1.96 16 3 Si 0.89 20.85 27.53 -169.99 -4.68 16.17 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.26 -5.93 6.11 56.52 0.35 -5.59 16 7 C -0.49 -12.94 5.51 -98.92 -0.55 -13.48 16 8 C 0.01 0.29 5.97 -27.48 -0.16 0.13 16 9 C -0.11 -2.56 5.50 -26.64 -0.15 -2.71 16 10 C 0.15 3.08 2.35 -67.98 -0.16 2.92 16 11 H 0.08 1.71 7.58 -51.93 -0.39 1.32 16 12 N -0.72 -11.76 5.07 -53.85 -0.27 -12.03 16 13 C 0.54 8.97 7.57 -10.98 -0.08 8.88 16 14 O -0.54 -11.42 15.92 5.55 0.09 -11.33 16 15 C -0.19 -2.31 6.19 -91.77 -0.57 -2.88 16 16 C -0.16 -1.56 10.24 -26.70 -0.27 -1.84 16 17 C -0.15 -1.63 10.05 -26.70 -0.27 -1.90 16 18 C -0.11 -2.20 5.40 -26.61 -0.14 -2.35 16 19 C -0.02 -0.42 5.60 -27.46 -0.15 -0.57 16 20 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 21 H 0.06 1.65 7.07 -51.93 -0.37 1.28 16 22 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 23 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.39 5.17 8.60 -40.82 -0.35 4.82 16 26 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.11 1.37 7.67 -51.93 -0.40 0.97 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.04 0.86 4.59 -51.93 -0.24 0.62 16 LS Contribution 276.65 15.07 4.17 4.17 Total: -1.00 -30.56 276.65 -7.76 -38.32 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -5.17 Total: 1.59 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: -2.60 Total: -11.83 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.43 Total: -37.09 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.09 Total: -11.33 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.68 Total: 16.17 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.56 -7.76 -38.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885598388.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.528 kcal (2) G-P(sol) polarization free energy of solvation -30.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds